| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 8 (1.080) | 4/314 | 0.3 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 0 (0.000) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 1 (0.140) | 10 (1.340) | 9/316 | 0.0 | 90.6% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
CGCATCCGGTAGCGATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG‑CGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATG‑ACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCG > NC_000913/381017‑381499 | cGCATCCGGTAGCGATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTGAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATGGTGCCAGGACGAATAAACGCATAATTACTAGACTgg < 1:141581/251‑1 (MQ=255) cGATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAAtct > 1:71156/1‑251 (MQ=255) cccTCTAGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGATTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACa > 1:27053/1‑250 (MQ=255) gTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCAGCGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCCGGACGACTAAACGCATAATTACTAGACTGGACCCCTGAATCTTCAGACAACCACTATCACTTAAATACGTGATCGTCTTAATACTAg > 1:170249/1‑193 (MQ=255) cGGCAATAAAACATTTCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTATACTGGCCCCCTGAATCTCCAGACAACCAATGTCACTTAAATAAGTGATAGTCTTAATACGAGTTTTTAGTCTAGTCATTGGAGAACAGAGGATTGATGTCTTAGGGCCGGAGAAACGCAGa < 1:65227/250‑1 (MQ=255) cAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAGCCGCATTTTTACTATCGGTGGCAAACCCAATTTTTACGCCATTGCTGCTTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGCTGATTGGTGTCTTAGGGCTGGAGACACGCAGACGG‑c > 1:73389/1‑251 (MQ=25) ggTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG‑CGTACCACACAGGAAAAGAACGCAATTGTTCAGCAGAGCTTTGAACCGGGGATG‑ACg > 1:37816/1‑249 (MQ=255) gTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATCATTATTAGACTGGCCCCCTGATTCACCAGACAACCCATACAACTTAAATAAGTGATAGTCTTACTACTAGTTTTTAGACTAGTCATTGAAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG‑CGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGACCCGGGGATG‑ACGGtc > 1:118864/1‑251 (MQ=17) tGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATCAGt > 1:60289/1‑111 (MQ=255) ggCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAACAATATCACTTAAATAAGAGATAGTCTTAATACTCGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG‑CGTACCACACAGGAAAAGATCGCAATTGTTCAGAAGAGCTTTGAACCGGGGATG‑ACGGtctc > 1:84192/1‑251 (MQ=255) gACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGTTAGTCTTAATATTATTTTTTAGACTATTCATTGAAGAACAGATGTTTGATGTCTTAGGGCCGGGGAAACGC‑GACGGGCGAACCACCCAGGAAAAGATCGCAATTGTTAACCAGA‑CTTTTGACCGGGGGTGGACGGCCTCCCTCGTTGcc > 1:37852/1‑220 (MQ=14) cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG‑CGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTCTGAACCGGGGAGG‑ACGGTCTCCGTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTggag < 1:162846/251‑3 (MQ=16) | CGCATCCGGTAGCGATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG‑CGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATG‑ACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCG > NC_000913/381017‑381499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |