| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 8 (1.080) | 4/314 | 0.3 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 0 (0.000) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 1 (0.140) | 10 (1.340) | 9/316 | 0.0 | 90.6% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
CCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCG > NC_000913/1105142‑1105623 | cccTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTCAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGCCAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccc > 1:80119‑M1/1‑239 (MQ=255) ccccGGACGATCGGGTGAATATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatat > 1:70603‑M1/1‑182 (MQ=255) tctgaacaattgtgttcttttcctgtgttgtacgccgtctgcgtttctccggccctaagacatcaatcatcttttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatatttgttgtctggtgattcagggttccagtctaACCCTCAAGGATGACTAATTATTGAGGAAATAGAATAAATGTTCATACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTcc < 1:133739‑M2/88‑1 (MQ=255) tacgccgtctgcgtttctccggccctaagacatcaattctctgttctccaatgactagtctaaaaaatagtattaagactatcacttatttcagtgatattggttgtctggagattcagggggcccggctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGATTGTTTTTTCCTTTTTTTGCCATTGCTGGGCGCACCGTgcacg > 1:148660‑M2/132‑249 (MQ=255) cacaACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGCGACTGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgccctatatttccagacctcttttattacctaacccattacaagaccgccgccgcaaatattcccgtggcgagcggtaacccaacccacctagcggatgccattcgttataatgcctgaacg > 1:162373‑M1/1‑122 (MQ=255) ggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggtgccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATTTTCATACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTGTTTCCTTTTATTGTCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTAt < 1:101220‑M2/140‑1 (MQ=255) gccgccCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgt < 1:93866‑M1/143‑32 (MQ=255) ncgcccTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca > 1:49195‑M1/2‑111 (MQ=255) cgccCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaagg < 1:66622‑M1/251‑142 (MQ=255) naatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTgg > 1:103471‑M2/99‑251 (MQ=255) caatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAAttgtn < 1:49513‑M2/152‑2 (MQ=255) aGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctg < 1:156693‑M1/251‑152 (MQ=255) aGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgat < 1:79326‑M1/251‑180 (MQ=255) ngactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCttt > 1:49821‑M2/57‑147 (MQ=255) gcGACTCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttctcacttaacccattacaagcccgctgccgccgatattcccgtggcgagcgataacacagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcacggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacga > 1:120215‑M1/1‑39 (MQ=255) ctaaCCATCAAGGATGACTAATCATTGAGGAAATAGATTAAATGTTCAGACCTTTTTTTAAAC‑ATCTTATGCTGGGCAGTATGTTTTTTCCTTTTAGTGCCATTGTTGGAAGCACCGTGCAAGGGGGCGTGATACATTTTTATGGACAAATTGTGGAACCGGGATGTGACGTCAGCACCCAGTCATCACACGTCGAAATGAACTCCCCATATAATGGATCTACTCCGGGAAAAACCTACTCCAGCAAAg > 1:158655/3‑249 (MQ=255) ctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCg > 1:141940‑M2/4‑251 (MQ=255) caACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagccagctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccatctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctcc > 1:129247‑M1/1‑7 (MQ=255) cccTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTg > 1:56195/1‑104 (MQ=255) cTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGcc > 1:59339/1‑201 (MQ=255) | CCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTT‑AAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCG > NC_000913/1105142‑1105623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |