| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,682,261 | Δ34 bp | coding (1154‑1187/1287 nt) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3682261 | 3682294 | 34 | 29 [0] | [0] 29 | dctA | C4 dicarboxylate/orotate:H(+) symporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3682260 | 0 (0.000) | 29 (1.350) | 26/486 | 0.1 | 100% | coding (1188/1287 nt) | dctA | C4 dicarboxylate/orotate:H(+) symporter |
| ? | NC_000913 | 3682295 = | 0 (0.000) | coding (1153/1287 nt) | dctA | C4 dicarboxylate/orotate:H(+) symporter | |||||
GTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCG > NC_000913/3682019‑3682500 | gtgtTAGACCGCAAGAACATGAAAATGACACGGAAGAAGTGAAATAAACCTGAAATCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacg > 2:169398‑M1/1‑242 (MQ=255) tAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttc > 1:81790‑M1/1‑238 (MQ=255) cATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcgg < 2:62835‑M1/251‑27 (MQ=255) cATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGCGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGCGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCACGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcgg > 2:120873‑M1/1‑225 (MQ=255) cACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccg > 1:66544‑M1/1‑214 (MQ=255) cTGAACTCACCCAGGTGGTAAGTGCAGGCACAGGGGTCAATTATGCGCACACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGCTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataacgcggtcgataccgaggatcagcgccagacccgctac > 2:90980‑M1/1‑193 (MQ=255) ccAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGAACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaantgg > 2:201717‑M1/1‑183 (MQ=255) aaGTTCAGGCACAGGGGTCAATTATGCTCAAACCCCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTTAGTGGATACTTCGTGCGTTTTGCCATCCGTCGCACGATTATTCAGCACATCGTCCATTTTGTTGTGGTCCAGTGCTTTCACTCACTTAGCAACGACAgcgcacgagcttctgtcgtaaagcgttcggtaccgaggatcagcgccagacccgctaccggcaaatggcctaccgca < 1:26595‑M1/251‑78 (MQ=255) cAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCTCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagag < 1:168622‑M1/251‑83 (MQ=255) cacaGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtc > 1:151156‑M1/1‑165 (MQ=255) gTCAATTATGCGCAAACGCCCGCACTCGGGGAAGGGAGTGCGTGCATAAGTGATGAGATTAAGAGGATTATTCGTTCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagatcgtcgccgccc < 2:160428‑M1/251‑94 (MQ=255) tcacttatgcGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGTACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTAACCCACTTAGCACCGACAgcgcacgagcttctgacataaagcggccgataccgaggatcagcgccagacccgctaccgtcaaatggcccaccgcagagagcgtcgccgcc > 2:65750‑M1/5‑157 (MQ=255) aCTCGGGGAAGGGCGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCGAGTTTTTTGTGGTACAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccacagcagagagcgtcgccgccagcacgataaagcctctacccgtt > 2:96204‑M1/1‑135 (MQ=255) aTAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttaga > 1:103701‑M1/1‑113 (MQ=255) aaTTCGTTCTTTTGGCCATCCGGCGCACGAGTATTCAGCACATCGTCCAGTTTTTTTTGGTCCAGTTCTTTCACCCCCTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacag < 2:177468‑M1/250‑161 (MQ=255) cGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtg > 1:49904‑M1/1‑86 (MQ=255) gTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGATCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctcccgtcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgat < 2:39982‑M1/251‑167 (MQ=255) gCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgaacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggac < 1:36283‑M1/251‑176 (MQ=255) cGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatc > 2:7309‑M1/1‑70 (MQ=255) ggCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACGTAGCAACGCCAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatcc < 1:90980‑M1/251‑183 (MQ=255) gcgcACGATTATTCAGCCCATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggtccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatcca < 1:120873‑M1/251‑184 (MQ=255) attCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaccaacgtgctttgcgggacgatatccatcttcctgtt > 2:46809‑M1/1‑58 (MQ=255) attCAGCACATCGTCCAGTTTTTTGTGGCCCAGTTCTTTCACCCAATTAACAACGACAgcgtacgatcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagcgcgtcgccgccagcacaataaagccactacccgttacccctgccgcccctttagacgaaagcagcaacacacttatcagcgttatttggtggccgatatccatatagatgtt > 1:27130‑M1/1‑58 (MQ=255) aGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtg < 1:201609‑M1/251‑198 (MQ=255) cAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagatcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaccacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgat < 1:427‑M1/251‑209 (MQ=255) cAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgcttaacagcgtgatttggtggacgatatccatctgactgttagtgtcctggtcgataaacaccgccgccat > 2:42587‑M1/1‑28 (MQ=255) cccttAGCAACGACGgcccacgagcttctgacataaagcggtcgatcccgaggatcagcgcgagacccgcttccggcaaatggcccaccgcagagagcgtcgccgccatcacgataaagcctctacccgttccccctgccgcccctttaaaagaaagcagcaacacgattaacagcgtgatttggtggacgatgtccatcggactgttagtggcctgggcgataaacaccgccgccattgtcaggtatatc < 1:96204‑M1/249‑237 (MQ=255) ataagaaacgacagctcacgagcttctgacagaaagcggtcgataccggggatcagcgccaaccccgctcccgccaaatgccccaccgcagagggcgtcgccgccagcacgataaagccactacccgttacccctgccgccccttgagaagaaagcagcaacacgattaacagcgtgattgggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtcaggtatatcga < 2:103701‑M1/245‑239 (MQ=255) aGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtcaggtatatcgatg < 1:193966‑M1/250‑241 (MQ=255) | GTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCG > NC_000913/3682019‑3682500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |