mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 213 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,634,482 | 0 | T | C | 64.7% | ‑4.5 / 10.7 | 17 | N135S (AAC→AGC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,285 | 0 | T | C | 61.9% | 30.0 / 42.3 | 42 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 4,542,683 | 0 | T | . | 61.9% | 3.1 / 36.9 | 21 | intergenic (+50/‑432) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| * | NC_000913 | 578,831 | 0 | T | C | 61.2% | 33.3 / 51.2 | 49 | T21T (ACA→ACG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 579,146 | 0 | A | G | 60.0% | 16.8 / 28.2 | 30 | intergenic (‑253/+38) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,658 | 0 | A | G | 60.0% | ‑4.8 / 46.9 | 46 | V76V (GTT→GTC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,769 | 0 | T | A | 60.0% | ‑4.7 / 23.4 | 25 | P39P (CCA→CCT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,778 | 0 | T | G | 60.0% | ‑6.4 / 23.1 | 25 | T36T (ACA→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,385 | 0 | A | G | 59.6% | 32.8 / 57.3 | 52 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,540 | 0 | T | C | 59.6% | 25.1 / 52.4 | 47 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,661 | 0 | C | G | 59.1% | ‑5.6 / 64.0 | 46 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,004 | 0 | C | T | 59.0% | 14.7 / 46.3 | 39 | intergenic (‑111/+180) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,699 | 0 | A | C | 59.0% | ‑6.7 / 45.0 | 39 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 578,811 | 0 | T | G | 58.8% | 23.4 / 67.8 | 51 | Q28P (CAG→CCG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 1,634,484 | 0 | G | T | 58.8% | ‑5.3 / 15.3 | 17 | N134K (AAC→AAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,271 | 0 | G | A | 58.5% | 14.0 / 50.6 | 41 | H108H (CAC→CAT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,597 | 0 | C | A | 58.5% | ‑2.3 / 53.4 | 41 | V97F (GTT→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,676 | 0 | A | G | 57.8% | ‑5.4 / 44.4 | 45 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 580,899 | 0 | G | A | 56.9% | 48.6 / 78.3 | 58 | W22* (TGG→TGA) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 578,809 | 0 | T | C | 56.9% | 14.3 / 64.7 | 52 | T29A (ACA→GCA) | borD | prophage lipoprotein BorD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15911 | NA (NA) | 6 (0.170) +TGTTTTCAA |
6/474 | 3.2 | NA | noncoding (525/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 15922 = | NA (NA) | noncoding (536/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 15912 | NA (NA) | 3 (0.080) +TTTTTCAA |
3/476 | 4.3 | NA | noncoding (526/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 15922 = | NA (NA) | noncoding (536/1345 nt) | IS186 | repeat region | |||||