#=GENOME_DIFF	1.0
#=CREATED	12:00:47 29 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20240527run10/IH190_S24_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20240527run10/IH190_S24_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20240527run10/IH190_S24_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20240527run10/IH190_S24_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20240527run10/IH190_S24_L001_R2_001.fastq.gz
#=CONVERTED-BASES	187920083
#=CONVERTED-READS	760727
#=INPUT-BASES	187924318
#=INPUT-READS	760832
#=MAPPED-BASES	171407599
#=MAPPED-READS	695937
MOB	1	591,592	NC_000913	57276	IS2	1	5
SNP	2	192	NC_000913	71134	A
DEL	3	580,593	NC_000913	257908	776
SNP	4	193	NC_000913	370321	A
SNP	5	194	NC_000913	371474	A
SNP	6	195	NC_000913	380786	A
SNP	7	196	NC_000913	385467	A
SNP	8	197	NC_000913	388743	A
SNP	9	198	NC_000913	394482	A
SNP	10	199	NC_000913	409730	T
SNP	11	200	NC_000913	413605	T
SNP	12	201	NC_000913	415343	T
SNP	13	202	NC_000913	420286	T
SNP	14	203	NC_000913	424345	T
SNP	15	204	NC_000913	424438	T
SNP	16	205	NC_000913	425545	T
SNP	17	206	NC_000913	429421	T
SNP	18	207	NC_000913	432667	T
SNP	19	208	NC_000913	445499	T
SNP	20	209	NC_000913	453002	T
SNP	21	210	NC_000913	457918	T
SNP	22	211	NC_000913	468141	T
SNP	23	212	NC_000913	472662	T
SNP	24	213	NC_000913	474516	T
SNP	25	214	NC_000913	488145	T
SNP	26	215	NC_000913	491574	A
SNP	27	216	NC_000913	504998	A
SNP	28	217	NC_000913	512793	A
SNP	29	218	NC_000913	523512	A
SNP	30	219	NC_000913	524839	A
SNP	31	220	NC_000913	527882	A
SNP	32	221	NC_000913	528820	A
SNP	33	222	NC_000913	551138	T
SNP	34	223	NC_000913	557635	T
SNP	35	224	NC_000913	562665	A
MOB	36	600,601	NC_000913	568449	IS2	-1	5
SNP	37	296	NC_000913	599761	A
SNP	38	297	NC_000913	604759	A
SNP	39	298	NC_000913	625977	A
SNP	40	299	NC_000913	631633	A
SNP	41	300	NC_000913	637484	C
SNP	42	301	NC_000913	725370	A
SNP	43	303	NC_000913	728358	A
SNP	44	304	NC_000913	729707	A
SNP	45	305	NC_000913	738456	A
SNP	46	306	NC_000913	752785	T
SNP	47	307	NC_000913	755646	T
SNP	48	308	NC_000913	787088	A
SNP	49	309	NC_000913	788604	A
SNP	50	310	NC_000913	796803	A
SNP	51	311	NC_000913	799060	A
SNP	52	312	NC_000913	811702	T
SNP	53	313	NC_000913	811945	A
SNP	54	314	NC_000913	813530	A
SNP	55	315	NC_000913	815815	A
SNP	56	316	NC_000913	819146	A
SNP	57	317	NC_000913	822704	A
SNP	58	318	NC_000913	823045	A
SNP	59	319	NC_000913	830066	A
SNP	60	320	NC_000913	838696	A
SNP	61	321	NC_000913	842503	A
SNP	62	322	NC_000913	843739	A
SNP	63	323	NC_000913	844802	A
SNP	64	324	NC_000913	848363	A
SNP	65	325	NC_000913	865779	A
SNP	66	326	NC_000913	868647	A
SNP	67	327	NC_000913	871029	A
SNP	68	328	NC_000913	879819	C
SNP	69	329	NC_000913	884185	A
SNP	70	330	NC_000913	902912	A
SNP	71	332	NC_000913	908882	A
SNP	72	333	NC_000913	914372	A
SNP	73	334	NC_000913	920786	A
SNP	74	335	NC_000913	931091	C
SNP	75	336	NC_000913	944547	A
SNP	76	337	NC_000913	957879	A
SNP	77	338	NC_000913	982235	A
SNP	78	339	NC_000913	987152	T
SNP	79	340	NC_000913	991897	A
SNP	80	341	NC_000913	994029	A
SNP	81	342	NC_000913	995030	A
SNP	82	343	NC_000913	1022447	A
SNP	83	344	NC_000913	1064331	A
SNP	84	345	NC_000913	1086957	A
SNP	85	346	NC_000913	1089330	A
MOB	86	597,602	NC_000913	1105376	IS2	-1	5
SNP	87	347	NC_000913	1196220	T
SNP	88	348	NC_000913	1196232	T
SNP	89	349	NC_000913	1196245	C
SNP	90	350	NC_000913	1196247	G
SNP	91	351	NC_000913	1196277	T
SNP	92	352	NC_000913	1196280	C
SNP	93	353	NC_000913	1196283	G
SNP	94	354	NC_000913	1196292	T
SNP	95	355	NC_000913	1196304	A
SNP	96	356	NC_000913	1231363	A
SNP	97	357	NC_000913	1237855	T
SNP	98	358	NC_000913	1260255	T
SNP	99	360	NC_000913	1290881	T
DEL	100	582,603	NC_000913	1294035	141
DEL	101	583,604	NC_000913	1299499	1199
DEL	102	605	NC_000913	1303073	12
SNP	103	361	NC_000913	1337394	G
SNP	104	362	NC_000913	1353758	A
DEL	105	469	NC_000913	1494388	1
SNP	106	470	NC_000913	1517508	T
SNP	107	471	NC_000913	1576911	A
SNP	108	497	NC_000913	1652331	C
DEL	109	498	NC_000913	1667887	1
SNP	110	499	NC_000913	1673859	A
DEL	111	500	NC_000913	1744751	1
MOB	112	607,608	NC_000913	1792772	IS2	-1	5
SNP	113	501	NC_000913	1799985	T
SNP	114	502	NC_000913	1823167	G
SNP	115	503	NC_000913	1872113	G
SNP	116	504	NC_000913	1978243	T
SNP	117	505	NC_000913	2003264	T
SNP	118	506	NC_000913	2004762	T
SNP	119	507	NC_000913	2032423	A
SNP	120	508	NC_000913	2064756	G
SNP	121	509	NC_000913	2090086	T
SNP	122	510	NC_000913	2101553	A
SNP	123	511	NC_000913	2109428	A
SNP	124	512	NC_000913	2139881	T
SNP	125	513	NC_000913	2152105	T
SNP	126	514	NC_000913	2166838	T
SNP	127	515	NC_000913	2169206	T
DEL	128	516,517	NC_000913	2173363	2
SNP	129	518	NC_000913	2183528	C
SNP	130	519	NC_000913	2242121	G
MOB	131	613,614	NC_000913	2269876	IS5	1	4
SNP	132	520	NC_000913	2271800	A
SNP	133	521	NC_000913	2274010	A
SNP	134	522	NC_000913	2276671	A
SNP	135	523	NC_000913	2279263	A
SNP	136	524	NC_000913	2291052	A
SNP	137	525	NC_000913	2294865	A
SNP	138	526	NC_000913	2296419	A
SNP	139	527	NC_000913	2296874	A
SNP	140	528	NC_000913	2297434	A
SNP	141	529	NC_000913	2299927	A
SNP	142	530	NC_000913	2303995	A
SNP	143	531	NC_000913	2319156	A
MOB	144	612,617	NC_000913	2319850	IS2	1	5
SNP	145	532	NC_000913	2323041	A
SNP	146	533	NC_000913	2323243	A
SNP	147	534	NC_000913	2340384	T
SNP	148	535	NC_000913	2341475	T
SNP	149	536	NC_000913	2355288	A
SNP	150	537	NC_000913	2365176	A
SNP	151	538	NC_000913	2371341	A
SNP	152	539	NC_000913	2373621	A
SNP	153	540	NC_000913	2384531	T
SNP	154	541	NC_000913	2390408	A
SNP	155	542	NC_000913	2397444	A
MOB	156	609,610	NC_000913	2406780	IS1	-1	8
SNP	157	543	NC_000913	2421391	A
SNP	158	544	NC_000913	2427382	T
SNP	159	545	NC_000913	2427516	T
SNP	160	546	NC_000913	2443906	T
SNP	161	547	NC_000913	2446459	T
SNP	162	548	NC_000913	2452924	T
SNP	163	549	NC_000913	2454572	T
SNP	164	550	NC_000913	2457433	T
DEL	165	585,618	NC_000913	2558699	6790
MOB	166	594,595	NC_000913	2666074	IS1	1	9
SNP	167	552	NC_000913	3102282	T
SNP	168	554	NC_000913	3215073	C
SNP	169	555	NC_000913	3268970	G
SNP	170	556	NC_000913	3339943	G
SNP	171	558	NC_000913	3446743	A
SNP	172	559	NC_000913	3486205	A
SNP	173	560	NC_000913	3502726	A
SNP	174	562	NC_000913	3549730	A
INS	175	563	NC_000913	3560455	G
SNP	176	564	NC_000913	3561880	A
SNP	177	565	NC_000913	3567058	A
DEL	178	587,620	NC_000913	3682261	34
MOB	179	619,621	NC_000913	3737137	IS2	1	5
SNP	180	567	NC_000913	4115770	T
MOB	181	622,623	NC_000913	4123923	IS2	-1	5
MOB	182	624,625	NC_000913	4135180	IS2	-1	5
INS	183	568	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	184	569	NC_000913	4217823	A
SNP	185	570	NC_000913	4223419	T
SNP	186	572	NC_000913	4264103	A
INS	187	573,574	NC_000913	4296381	GC
MOB	188	615,616	NC_000913	4536236	IS5	1	4
SNP	189	575	NC_000913	4538491	T
SNP	190	578	NC_000913	4543024	G
SNP	191	579	NC_000913	4559104	A
RA	192	.	NC_000913	71134	0	G	A	consensus_score=140.3	frequency=1	major_base=A	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	193	.	NC_000913	370321	0	G	A	consensus_score=156.0	frequency=1	major_base=A	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	194	.	NC_000913	371474	0	G	A	consensus_score=120.5	frequency=1	major_base=A	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	195	.	NC_000913	380786	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=115.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/22	major_frequency=9.706e-01	minor_base=T	minor_cov=0/1	new_cov=11/22	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/23
RA	196	.	NC_000913	385467	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=152.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/20	major_frequency=9.783e-01	minor_base=G	minor_cov=1/0	new_cov=25/20	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/20
RA	197	.	NC_000913	388743	0	G	A	bias_e_value=3887480	bias_p_value=0.837521	consensus_score=126.5	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/19	major_frequency=9.487e-01	minor_base=C	minor_cov=2/0	new_cov=18/19	polymorphism_frequency=9.487e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	198	.	NC_000913	394482	0	G	A	consensus_score=94.0	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	199	.	NC_000913	409730	0	C	T	consensus_score=115.3	frequency=1	major_base=T	major_cov=7/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/27
RA	200	.	NC_000913	413605	0	C	T	consensus_score=111.3	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	201	.	NC_000913	415343	0	C	T	consensus_score=124.1	frequency=1	major_base=T	major_cov=11/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/24
RA	202	.	NC_000913	420286	0	C	T	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=146.8	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/25	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=19/25	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=20/25
RA	203	.	NC_000913	424345	0	C	T	consensus_score=135.1	frequency=1	major_base=T	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	204	.	NC_000913	424438	0	C	T	consensus_score=141.8	frequency=1	major_base=T	major_cov=15/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/28
RA	205	.	NC_000913	425545	0	C	T	consensus_score=127.9	frequency=1	major_base=T	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	206	.	NC_000913	429421	0	C	T	consensus_score=158.0	frequency=1	major_base=T	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	207	.	NC_000913	432667	0	C	T	consensus_score=161.5	frequency=1	major_base=T	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	208	.	NC_000913	445499	0	C	T	consensus_score=55.8	frequency=1	major_base=T	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	209	.	NC_000913	453002	0	C	T	consensus_score=131.3	frequency=1	major_base=T	major_cov=24/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/14
RA	210	.	NC_000913	457918	0	C	T	bias_e_value=3759000	bias_p_value=0.809841	consensus_score=105.2	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.997852	major_base=T	major_cov=13/17	major_frequency=9.677e-01	minor_base=A	minor_cov=1/0	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	211	.	NC_000913	468141	0	C	T	consensus_score=93.3	frequency=1	major_base=T	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	212	.	NC_000913	472662	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=119.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/20	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=15/20	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	213	.	NC_000913	474516	0	C	T	consensus_score=103.4	frequency=1	major_base=T	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	214	.	NC_000913	488145	0	C	T	consensus_score=95.0	frequency=1	major_base=T	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	215	.	NC_000913	491574	0	G	A	bias_e_value=3663450	bias_p_value=0.789256	consensus_score=111.5	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.9933	major_base=A	major_cov=20/14	major_frequency=9.714e-01	minor_base=T	minor_cov=0/1	new_cov=20/14	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	216	.	NC_000913	504998	0	G	A	consensus_score=105.1	frequency=1	major_base=A	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	217	.	NC_000913	512793	0	G	A	bias_e_value=4636970	bias_p_value=0.998992	consensus_score=86.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.955439	major_base=A	major_cov=15/11	major_frequency=9.630e-01	minor_base=.	minor_cov=1/0	new_cov=15/11	polymorphism_frequency=9.630e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	218	.	NC_000913	523512	0	G	A	consensus_score=76.9	frequency=1	major_base=A	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	219	.	NC_000913	524839	0	G	A	bias_e_value=3815510	bias_p_value=0.822016	consensus_score=170.3	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=0.988456	major_base=A	major_cov=24/28	major_frequency=9.811e-01	minor_base=C	minor_cov=1/0	new_cov=24/28	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	220	.	NC_000913	527882	0	G	A	consensus_score=76.8	frequency=1	major_base=A	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	221	.	NC_000913	528820	0	G	A	consensus_score=60.5	frequency=1	major_base=A	major_cov=6/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/12
RA	222	.	NC_000913	551138	0	C	T	consensus_score=104.1	frequency=1	major_base=T	major_cov=9/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/24
RA	223	.	NC_000913	557635	0	A	T	consensus_score=132.7	frequency=1	major_base=T	major_cov=12/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/25
RA	224	.	NC_000913	562665	0	G	A	consensus_score=119.7	frequency=1	major_base=A	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	225	.	NC_000913	566173	0	C	G	bias_e_value=3316130	bias_p_value=0.714429	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.5	fisher_strand_p_value=0.520318	frequency=3.415e-01	ks_quality_p_value=0.667179	major_base=C	major_cov=14/13	major_frequency=6.585e-01	minor_base=G	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=3.415e-01	polymorphism_score=48.2	prediction=polymorphism	ref_cov=14/13	total_cov=23/18
RA	226	.	NC_000913	566205	0	T	C	bias_e_value=2976360	bias_p_value=0.641229	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.5	fisher_strand_p_value=0.514641	frequency=3.333e-01	ks_quality_p_value=0.551431	major_base=T	major_cov=14/14	major_frequency=6.667e-01	minor_base=C	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=3.333e-01	polymorphism_score=37.9	prediction=polymorphism	ref_cov=14/14	total_cov=23/19
RA	227	.	NC_000913	566245	0	G	A	bias_e_value=2858910	bias_p_value=0.615924	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.8	fisher_strand_p_value=1	frequency=3.111e-01	ks_quality_p_value=0.264246	major_base=G	major_cov=20/11	major_frequency=6.889e-01	minor_base=A	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=3.111e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=20/11	total_cov=29/16
RA	228	.	NC_000913	566277	0	C	T	bias_e_value=2552390	bias_p_value=0.549888	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.7	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.21788	major_base=C	major_cov=18/10	major_frequency=6.667e-01	minor_base=T	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=3.333e-01	polymorphism_score=36.5	prediction=polymorphism	ref_cov=18/10	total_cov=27/15
RA	229	.	NC_000913	566323	0	C	T	bias_e_value=4395780	bias_p_value=0.947029	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.5	fisher_strand_p_value=0.692697	frequency=2.308e-01	ks_quality_p_value=1	major_base=C	major_cov=22/8	major_frequency=7.692e-01	minor_base=T	minor_cov=6/3	new_cov=6/3	polymorphism_frequency=2.308e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=22/8	total_cov=28/11
RA	230	.	NC_000913	566326	0	T	C	bias_e_value=4071960	bias_p_value=0.877264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.1	fisher_strand_p_value=1	frequency=2.432e-01	ks_quality_p_value=0.547424	major_base=T	major_cov=20/8	major_frequency=7.568e-01	minor_base=C	minor_cov=6/3	new_cov=6/3	polymorphism_frequency=2.432e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=20/8	total_cov=26/11
RA	231	.	NC_000913	566468	0	C	T	bias_e_value=4368390	bias_p_value=0.941129	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.9	fisher_strand_p_value=0.709518	frequency=2.045e-01	ks_quality_p_value=0.954323	major_base=C	major_cov=16/19	major_frequency=7.955e-01	minor_base=T	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.045e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=16/19	total_cov=20/25
RA	232	.	NC_000913	566492	0	G	T	bias_e_value=4544620	bias_p_value=0.979096	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.8	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.802622	major_base=G	major_cov=17/18	major_frequency=7.292e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=37.4	prediction=polymorphism	ref_cov=17/18	total_cov=23/25
RA	233	.	NC_000913	566493	0	G	A	bias_e_value=4641100	bias_p_value=0.999881	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.3	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.984643	major_base=G	major_cov=17/18	major_frequency=7.292e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=29.5	prediction=polymorphism	ref_cov=17/18	total_cov=23/25
RA	234	.	NC_000913	566498	0	C	T	bias_e_value=4641150	bias_p_value=0.999892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.1	fisher_strand_p_value=1	frequency=2.653e-01	ks_quality_p_value=0.985369	major_base=C	major_cov=17/19	major_frequency=7.347e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.653e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=17/19	total_cov=23/26
RA	235	.	NC_000913	566510	0	G	C	bias_e_value=4493270	bias_p_value=0.968033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.1	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.758043	major_base=G	major_cov=17/18	major_frequency=7.292e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=17/18	total_cov=23/25
RA	236	.	NC_000913	566513	0	C	T	bias_e_value=4565810	bias_p_value=0.983662	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.3	fisher_strand_p_value=1	frequency=2.653e-01	ks_quality_p_value=0.824765	major_base=C	major_cov=18/18	major_frequency=7.347e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.653e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=18/18	total_cov=24/25
RA	237	.	NC_000913	566519	0	T	C	bias_e_value=3463760	bias_p_value=0.746235	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.8	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.378507	major_base=T	major_cov=18/17	major_frequency=7.292e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=33.7	prediction=polymorphism	ref_cov=18/17	total_cov=24/24
RA	238	.	NC_000913	566522	0	C	A	bias_e_value=4493270	bias_p_value=0.968033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.5	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.758043	major_base=C	major_cov=18/17	major_frequency=7.292e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=33.9	prediction=polymorphism	ref_cov=18/17	total_cov=24/24
RA	239	.	NC_000913	566528	0	A	G	bias_e_value=3162060	bias_p_value=0.681236	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.0	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.317043	major_base=A	major_cov=18/17	major_frequency=7.292e-01	minor_base=G	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=33.3	prediction=polymorphism	ref_cov=18/17	total_cov=24/24
RA	240	.	NC_000913	566530	1	.	T	bias_e_value=2697850	bias_p_value=0.581226	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.5	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.239103	major_base=.	major_cov=18/17	major_frequency=7.292e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=64.1	prediction=polymorphism	ref_cov=18/17	total_cov=24/24
RA	241	.	NC_000913	566532	0	A	T	bias_e_value=4493270	bias_p_value=0.968033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.7	fisher_strand_p_value=1	frequency=2.708e-01	ks_quality_p_value=0.758043	major_base=A	major_cov=18/17	major_frequency=7.292e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.708e-01	polymorphism_score=38.0	prediction=polymorphism	ref_cov=18/17	total_cov=24/24
RA	242	.	NC_000913	566535	0	T	.	bias_e_value=754559	bias_p_value=0.162563	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.3	fisher_strand_p_value=0.753614	frequency=2.653e-01	ks_quality_p_value=0.050544	major_base=T	major_cov=19/17	major_frequency=7.347e-01	minor_base=.	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.653e-01	polymorphism_score=47.9	prediction=polymorphism	ref_cov=19/17	total_cov=25/24
RA	243	.	NC_000913	566536	0	G	A	bias_e_value=926158	bias_p_value=0.199532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.2	fisher_strand_p_value=0.755393	frequency=2.549e-01	ks_quality_p_value=0.0660782	major_base=G	major_cov=20/18	major_frequency=7.451e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.549e-01	polymorphism_score=29.9	prediction=polymorphism	ref_cov=20/18	total_cov=26/25
RA	244	.	NC_000913	566543	0	A	T	bias_e_value=2190790	bias_p_value=0.471984	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.3	fisher_strand_p_value=0.539517	frequency=2.593e-01	ks_quality_p_value=0.315884	major_base=A	major_cov=22/18	major_frequency=7.407e-01	minor_base=T	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.593e-01	polymorphism_score=42.5	prediction=polymorphism	ref_cov=22/18	total_cov=28/26
RA	245	.	NC_000913	566547	0	C	A	bias_e_value=757571	bias_p_value=0.163211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.2	fisher_strand_p_value=0.539517	frequency=2.593e-01	ks_quality_p_value=0.0709697	major_base=C	major_cov=22/18	major_frequency=7.407e-01	minor_base=A	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.593e-01	polymorphism_score=39.2	prediction=polymorphism	ref_cov=22/18	total_cov=28/26
RA	246	.	NC_000913	566565	0	A	G	bias_e_value=2876950	bias_p_value=0.619811	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.275881	frequency=3.509e-01	ks_quality_p_value=0.968455	major_base=A	major_cov=19/18	major_frequency=6.491e-01	minor_base=G	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=3.509e-01	polymorphism_score=51.9	prediction=polymorphism	ref_cov=19/18	total_cov=27/31
RA	247	.	NC_000913	566570	0	A	C	bias_e_value=3561390	bias_p_value=0.767268	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.7	fisher_strand_p_value=0.421601	frequency=3.684e-01	ks_quality_p_value=0.950713	major_base=A	major_cov=18/18	major_frequency=6.316e-01	minor_base=C	minor_cov=8/13	new_cov=8/13	polymorphism_frequency=3.684e-01	polymorphism_score=53.6	prediction=polymorphism	ref_cov=18/18	total_cov=26/31
RA	248	.	NC_000913	566597	0	T	C	bias_e_value=4176710	bias_p_value=0.899832	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.7	fisher_strand_p_value=0.611317	frequency=3.934e-01	ks_quality_p_value=0.960589	major_base=T	major_cov=18/19	major_frequency=6.066e-01	minor_base=C	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=3.934e-01	polymorphism_score=69.8	prediction=polymorphism	ref_cov=18/19	total_cov=28/33
RA	249	.	NC_000913	566651	0	T	C	bias_e_value=4641570	bias_p_value=0.999982	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.0	fisher_strand_p_value=1	frequency=4.310e-01	ks_quality_p_value=0.993999	major_base=T	major_cov=17/16	major_frequency=5.690e-01	minor_base=C	minor_cov=12/13	new_cov=12/13	polymorphism_frequency=4.310e-01	polymorphism_score=74.5	prediction=polymorphism	ref_cov=17/16	total_cov=29/29
RA	250	.	NC_000913	566728	0	G	T	bias_e_value=1379450	bias_p_value=0.29719	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.6	fisher_strand_p_value=0.559203	frequency=3.400e-01	ks_quality_p_value=0.153934	major_base=G	major_cov=17/16	major_frequency=6.600e-01	minor_base=T	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=3.400e-01	polymorphism_score=49.5	prediction=polymorphism	ref_cov=17/16	total_cov=24/26
RA	251	.	NC_000913	566740	0	A	G	bias_e_value=2578810	bias_p_value=0.55558	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.4	fisher_strand_p_value=0.363502	frequency=3.265e-01	ks_quality_p_value=0.609727	major_base=A	major_cov=18/15	major_frequency=6.735e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=3.265e-01	polymorphism_score=41.8	prediction=polymorphism	ref_cov=18/15	total_cov=24/25
RA	252	.	NC_000913	566742	0	A	C	bias_e_value=3259730	bias_p_value=0.702278	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.2	fisher_strand_p_value=0.363502	frequency=3.265e-01	ks_quality_p_value=0.923893	major_base=A	major_cov=18/15	major_frequency=6.735e-01	minor_base=C	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=3.265e-01	polymorphism_score=42.2	prediction=polymorphism	ref_cov=18/15	total_cov=24/25
RA	253	.	NC_000913	566756	0	G	C	bias_e_value=2263410	bias_p_value=0.487631	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.4	fisher_strand_p_value=0.363502	frequency=3.200e-01	ks_quality_p_value=0.493528	major_base=G	major_cov=19/15	major_frequency=6.800e-01	minor_base=C	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=3.200e-01	polymorphism_score=53.0	prediction=polymorphism	ref_cov=19/15	total_cov=25/25
RA	254	.	NC_000913	566770	0	C	A	bias_e_value=2126010	bias_p_value=0.45803	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.5	fisher_strand_p_value=0.375834	frequency=3.077e-01	ks_quality_p_value=0.432745	major_base=C	major_cov=19/17	major_frequency=6.923e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=3.077e-01	polymorphism_score=42.8	prediction=polymorphism	ref_cov=19/17	total_cov=25/27
RA	255	.	NC_000913	568052	0	T	C	bias_e_value=2237560	bias_p_value=0.482061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.2	fisher_strand_p_value=0.745616	frequency=2.453e-01	ks_quality_p_value=0.236279	major_base=T	major_cov=15/25	major_frequency=7.547e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.453e-01	polymorphism_score=29.5	prediction=polymorphism	ref_cov=15/25	total_cov=21/33
RA	256	.	NC_000913	578331	0	G	T	bias_e_value=3184040	bias_p_value=0.68597	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.8	fisher_strand_p_value=0.470523	frequency=3.143e-01	ks_quality_p_value=0.682619	major_base=G	major_cov=13/11	major_frequency=6.857e-01	minor_base=T	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=3.143e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=13/11	total_cov=17/18
RA	257	.	NC_000913	578427	0	G	C	bias_e_value=1865170	bias_p_value=0.401834	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=1	frequency=4.524e-01	ks_quality_p_value=0.133257	major_base=G	major_cov=11/12	major_frequency=5.476e-01	minor_base=C	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=4.524e-01	polymorphism_score=70.5	prediction=polymorphism	ref_cov=11/12	total_cov=20/23
RA	258	.	NC_000913	578571	0	C	T	bias_e_value=4224630	bias_p_value=0.910157	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.3	fisher_strand_p_value=1	frequency=4.600e-01	ks_quality_p_value=0.607254	major_base=C	major_cov=11/16	major_frequency=5.400e-01	minor_base=T	minor_cov=9/14	new_cov=9/14	polymorphism_frequency=4.600e-01	polymorphism_score=67.5	prediction=polymorphism	ref_cov=11/16	total_cov=21/30
RA	259	.	NC_000913	578574	0	A	C	bias_e_value=3427700	bias_p_value=0.738465	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.7	fisher_strand_p_value=0.779349	frequency=4.902e-01	ks_quality_p_value=0.475519	major_base=A	major_cov=10/16	major_frequency=5.098e-01	minor_base=C	minor_cov=11/14	new_cov=11/14	polymorphism_frequency=4.902e-01	polymorphism_score=82.9	prediction=polymorphism	ref_cov=10/16	total_cov=22/30
RA	260	.	NC_000913	578605	0	T	G	bias_e_value=1946960	bias_p_value=0.419455	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.1	fisher_strand_p_value=0.410615	frequency=4.074e-01	ks_quality_p_value=0.346173	major_base=T	major_cov=12/20	major_frequency=5.926e-01	minor_base=G	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=4.074e-01	polymorphism_score=77.5	prediction=polymorphism	ref_cov=12/20	total_cov=23/31
RA	261	.	NC_000913	578729	0	A	G	bias_e_value=2289210	bias_p_value=0.493189	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.9	fisher_strand_p_value=0.18851	frequency=4.737e-01	ks_quality_p_value=0.968914	major_base=A	major_cov=12/18	major_frequency=5.263e-01	minor_base=G	minor_cov=16/11	new_cov=16/11	polymorphism_frequency=4.737e-01	polymorphism_score=87.6	prediction=polymorphism	ref_cov=12/18	total_cov=28/29
RA	262	.	NC_000913	578809	0	T	C	bias_e_value=780079	bias_p_value=0.168061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.3	fisher_strand_p_value=0.779349	frequency=5.686e-01	ks_quality_p_value=0.0510483	major_base=C	major_cov=15/14	major_frequency=5.686e-01	minor_base=T	minor_cov=10/12	new_cov=15/14	polymorphism_frequency=5.686e-01	polymorphism_score=64.7	prediction=polymorphism	ref_cov=10/12	total_cov=25/27
RA	263	.	NC_000913	578811	0	T	G	bias_e_value=751.074	bias_p_value=0.000161812	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.4	fisher_strand_p_value=0.776591	frequency=5.882e-01	ks_quality_p_value=1.70324e-05	major_base=G	major_cov=15/15	major_frequency=5.882e-01	minor_base=T	minor_cov=9/12	new_cov=15/15	polymorphism_frequency=5.882e-01	polymorphism_score=67.8	prediction=polymorphism	ref_cov=9/12	total_cov=24/27
RA	264	.	NC_000913	578831	0	T	C	bias_e_value=1304740	bias_p_value=0.281093	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.3	fisher_strand_p_value=0.769745	frequency=6.122e-01	ks_quality_p_value=0.103435	major_base=C	major_cov=15/15	major_frequency=6.122e-01	minor_base=T	minor_cov=8/11	new_cov=15/15	polymorphism_frequency=6.122e-01	polymorphism_score=51.2	prediction=polymorphism	ref_cov=8/11	total_cov=23/26
RA	265	.	NC_000913	579004	0	C	T	bias_e_value=1559830	bias_p_value=0.336051	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.7	fisher_strand_p_value=0.342208	frequency=5.897e-01	ks_quality_p_value=0.299612	major_base=T	major_cov=14/9	major_frequency=5.897e-01	minor_base=C	minor_cov=7/9	new_cov=14/9	polymorphism_frequency=5.897e-01	polymorphism_score=46.3	prediction=polymorphism	ref_cov=7/9	total_cov=21/18
RA	266	.	NC_000913	579099	0	A	.	bias_e_value=2261260	bias_p_value=0.487167	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.4	fisher_strand_p_value=0.745855	frequency=5.135e-01	ks_quality_p_value=0.240166	major_base=.	major_cov=8/11	major_frequency=5.135e-01	minor_base=A	minor_cov=9/9	new_cov=8/11	polymorphism_frequency=5.135e-01	polymorphism_score=88.8	prediction=polymorphism	ref_cov=9/9	total_cov=17/20
RA	267	.	NC_000913	579127	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.4	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=8/7	major_frequency=5.000e-01	minor_base=T	minor_cov=7/8	new_cov=8/7	polymorphism_frequency=5.000e-01	polymorphism_score=41.4	prediction=polymorphism	ref_cov=7/8	total_cov=15/15
RA	268	.	NC_000913	579134	0	T	C	bias_e_value=4408670	bias_p_value=0.949805	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.8	fisher_strand_p_value=0.715249	frequency=5.172e-01	ks_quality_p_value=0.979201	major_base=C	major_cov=8/7	major_frequency=5.172e-01	minor_base=T	minor_cov=6/8	new_cov=8/7	polymorphism_frequency=5.172e-01	polymorphism_score=37.1	prediction=polymorphism	ref_cov=6/8	total_cov=15/15
RA	269	.	NC_000913	579146	0	A	G	bias_e_value=4323260	bias_p_value=0.931406	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.8	fisher_strand_p_value=0.721966	frequency=6.000e-01	ks_quality_p_value=0.904837	major_base=G	major_cov=9/9	major_frequency=6.000e-01	minor_base=A	minor_cov=7/5	new_cov=9/9	polymorphism_frequency=6.000e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=7/5	total_cov=16/14
RA	270	.	NC_000913	579271	0	G	A	bias_e_value=4308650	bias_p_value=0.928258	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.0	fisher_strand_p_value=0.74171	frequency=5.854e-01	ks_quality_p_value=0.870915	major_base=A	major_cov=7/17	major_frequency=5.854e-01	minor_base=G	minor_cov=6/11	new_cov=7/17	polymorphism_frequency=5.854e-01	polymorphism_score=50.6	prediction=polymorphism	ref_cov=6/11	total_cov=13/28
RA	271	.	NC_000913	579285	0	T	C	bias_e_value=3468290	bias_p_value=0.747211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.0	fisher_strand_p_value=1	frequency=6.190e-01	ks_quality_p_value=0.379514	major_base=C	major_cov=8/18	major_frequency=6.190e-01	minor_base=T	minor_cov=5/11	new_cov=8/18	polymorphism_frequency=6.190e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=5/11	total_cov=13/29
RA	272	.	NC_000913	579385	0	A	G	bias_e_value=2089030	bias_p_value=0.450061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.8	fisher_strand_p_value=0.164239	frequency=5.962e-01	ks_quality_p_value=0.963748	major_base=G	major_cov=10/21	major_frequency=5.962e-01	minor_base=A	minor_cov=11/10	new_cov=10/21	polymorphism_frequency=5.962e-01	polymorphism_score=57.3	prediction=polymorphism	ref_cov=11/10	total_cov=21/31
RA	273	.	NC_000913	579457	0	A	G	bias_e_value=73773.5	bias_p_value=0.0158938	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.5	fisher_strand_p_value=0.0542308	frequency=5.385e-01	ks_quality_p_value=0.0412655	major_base=G	major_cov=12/16	major_frequency=5.385e-01	minor_base=A	minor_cov=17/7	new_cov=12/16	polymorphism_frequency=5.385e-01	polymorphism_score=71.2	prediction=polymorphism	ref_cov=17/7	total_cov=29/23
RA	274	.	NC_000913	579502	0	A	G	bias_e_value=10130	bias_p_value=0.00218242	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.1	fisher_strand_p_value=0.567496	frequency=5.306e-01	ks_quality_p_value=0.000410681	major_base=G	major_cov=13/13	major_frequency=5.306e-01	minor_base=A	minor_cov=14/9	new_cov=13/13	polymorphism_frequency=5.306e-01	polymorphism_score=66.4	prediction=polymorphism	ref_cov=14/9	total_cov=27/22
RA	275	.	NC_000913	579540	0	T	C	bias_e_value=1620350	bias_p_value=0.34909	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=0.758774	frequency=5.957e-01	ks_quality_p_value=0.142763	major_base=C	major_cov=17/11	major_frequency=5.957e-01	minor_base=T	minor_cov=13/6	new_cov=17/11	polymorphism_frequency=5.957e-01	polymorphism_score=52.4	prediction=polymorphism	ref_cov=13/6	total_cov=30/17
RA	276	.	NC_000913	579651	0	C	T	bias_e_value=2833390	bias_p_value=0.610426	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.3	fisher_strand_p_value=0.267175	frequency=5.294e-01	ks_quality_p_value=0.973665	major_base=T	major_cov=17/10	major_frequency=5.294e-01	minor_base=C	minor_cov=11/13	new_cov=17/10	polymorphism_frequency=5.294e-01	polymorphism_score=68.5	prediction=polymorphism	ref_cov=11/13	total_cov=29/23
RA	277	.	NC_000913	579671	0	T	C	bias_e_value=1970320	bias_p_value=0.424487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=0.156701	frequency=5.510e-01	ks_quality_p_value=0.923639	major_base=C	major_cov=17/10	major_frequency=5.510e-01	minor_base=T	minor_cov=9/13	new_cov=17/10	polymorphism_frequency=5.510e-01	polymorphism_score=59.9	prediction=polymorphism	ref_cov=9/13	total_cov=26/23
RA	278	.	NC_000913	579717	0	A	C	bias_e_value=305329	bias_p_value=0.0657802	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.0	fisher_strand_p_value=0.102967	frequency=5.357e-01	ks_quality_p_value=0.118095	major_base=C	major_cov=21/9	major_frequency=5.357e-01	minor_base=A	minor_cov=12/14	new_cov=21/9	polymorphism_frequency=5.357e-01	polymorphism_score=89.4	prediction=polymorphism	ref_cov=12/14	total_cov=33/23
RA	279	.	NC_000913	579811	0	C	T	bias_e_value=1634090	bias_p_value=0.352049	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.7	fisher_strand_p_value=0.173064	frequency=5.283e-01	ks_quality_p_value=0.633636	major_base=T	major_cov=18/10	major_frequency=5.283e-01	minor_base=C	minor_cov=11/14	new_cov=18/10	polymorphism_frequency=5.283e-01	polymorphism_score=79.5	prediction=polymorphism	ref_cov=11/14	total_cov=29/25
RA	280	.	NC_000913	580020	0	G	A	bias_e_value=3683470	bias_p_value=0.793568	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.1	fisher_strand_p_value=0.568281	frequency=5.217e-01	ks_quality_p_value=0.758048	major_base=A	major_cov=12/12	major_frequency=5.217e-01	minor_base=G	minor_cov=13/9	new_cov=12/12	polymorphism_frequency=5.217e-01	polymorphism_score=67.2	prediction=polymorphism	ref_cov=13/9	total_cov=25/21
RA	281	.	NC_000913	580115	0	C	T	bias_e_value=3009730	bias_p_value=0.648418	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.6	fisher_strand_p_value=0.292372	frequency=5.088e-01	ks_quality_p_value=0.990325	major_base=T	major_cov=13/16	major_frequency=5.088e-01	minor_base=C	minor_cov=17/11	new_cov=13/16	polymorphism_frequency=5.088e-01	polymorphism_score=86.4	prediction=polymorphism	ref_cov=17/11	total_cov=30/27
RA	282	.	NC_000913	580119	0	A	G	bias_e_value=3683740	bias_p_value=0.793627	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.8	fisher_strand_p_value=0.430854	frequency=5.088e-01	ks_quality_p_value=1	major_base=G	major_cov=13/16	major_frequency=5.088e-01	minor_base=A	minor_cov=16/12	new_cov=13/16	polymorphism_frequency=5.088e-01	polymorphism_score=76.6	prediction=polymorphism	ref_cov=16/12	total_cov=29/28
RA	283	.	NC_000913	580120	0	C	T	bias_e_value=3683740	bias_p_value=0.793627	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.2	fisher_strand_p_value=0.430854	frequency=5.088e-01	ks_quality_p_value=1	major_base=T	major_cov=13/16	major_frequency=5.088e-01	minor_base=C	minor_cov=16/12	new_cov=13/16	polymorphism_frequency=5.088e-01	polymorphism_score=80.8	prediction=polymorphism	ref_cov=16/12	total_cov=29/28
RA	284	.	NC_000913	580302	0	C	T	bias_e_value=3951800	bias_p_value=0.851377	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.9	fisher_strand_p_value=0.784597	frequency=4.717e-01	ks_quality_p_value=0.646193	major_base=C	major_cov=14/14	major_frequency=5.283e-01	minor_base=T	minor_cov=11/14	new_cov=11/14	polymorphism_frequency=4.717e-01	polymorphism_score=69.9	prediction=polymorphism	ref_cov=14/14	total_cov=25/28
RA	285	.	NC_000913	580437	0	A	C	bias_e_value=4127750	bias_p_value=0.889286	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.5	fisher_strand_p_value=0.741054	frequency=3.500e-01	ks_quality_p_value=0.76649	major_base=A	major_cov=14/12	major_frequency=6.500e-01	minor_base=C	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=3.500e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=14/12	total_cov=20/20
RA	286	.	NC_000913	580830	0	T	A	bias_e_value=2302370	bias_p_value=0.496024	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.2	fisher_strand_p_value=0.325467	frequency=2.955e-01	ks_quality_p_value=0.566331	major_base=T	major_cov=13/18	major_frequency=7.045e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.955e-01	polymorphism_score=38.2	prediction=polymorphism	ref_cov=13/18	total_cov=21/23
RA	287	.	NC_000913	580831	0	G	A	bias_e_value=3373910	bias_p_value=0.726878	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=0.497113	frequency=2.791e-01	ks_quality_p_value=0.722378	major_base=G	major_cov=13/18	major_frequency=7.209e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.791e-01	polymorphism_score=29.9	prediction=polymorphism	ref_cov=13/18	total_cov=21/23
RA	288	.	NC_000913	580899	0	G	A	bias_e_value=4531810	bias_p_value=0.976335	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.6	fisher_strand_p_value=1	frequency=5.690e-01	ks_quality_p_value=0.790484	major_base=A	major_cov=19/14	major_frequency=5.690e-01	minor_base=G	minor_cov=15/10	new_cov=19/14	polymorphism_frequency=5.690e-01	polymorphism_score=78.3	prediction=polymorphism	ref_cov=15/10	total_cov=34/24
RA	289	.	NC_000913	581042	0	T	G	bias_e_value=3691540	bias_p_value=0.795307	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.3	fisher_strand_p_value=0.585679	frequency=4.906e-01	ks_quality_p_value=0.739064	major_base=T	major_cov=13/14	major_frequency=5.094e-01	minor_base=G	minor_cov=15/11	new_cov=15/11	polymorphism_frequency=4.906e-01	polymorphism_score=86.3	prediction=polymorphism	ref_cov=13/14	total_cov=28/25
RA	290	.	NC_000913	581056	0	A	G	bias_e_value=4272870	bias_p_value=0.92055	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.7	fisher_strand_p_value=0.781924	frequency=4.706e-01	ks_quality_p_value=0.804234	major_base=A	major_cov=15/12	major_frequency=5.294e-01	minor_base=G	minor_cov=12/12	new_cov=12/12	polymorphism_frequency=4.706e-01	polymorphism_score=65.8	prediction=polymorphism	ref_cov=15/12	total_cov=27/24
RA	291	.	NC_000913	581073	0	G	A	bias_e_value=1695400	bias_p_value=0.365257	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.1	fisher_strand_p_value=0.394359	frequency=4.082e-01	ks_quality_p_value=0.293412	major_base=G	major_cov=17/12	major_frequency=5.918e-01	minor_base=A	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=4.082e-01	polymorphism_score=55.4	prediction=polymorphism	ref_cov=17/12	total_cov=26/23
RA	292	.	NC_000913	581118	0	T	C	bias_e_value=3672040	bias_p_value=0.791107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.0	fisher_strand_p_value=0.731094	frequency=3.000e-01	ks_quality_p_value=0.585251	major_base=T	major_cov=15/13	major_frequency=7.000e-01	minor_base=C	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=3.000e-01	polymorphism_score=30.0	prediction=polymorphism	ref_cov=15/13	total_cov=20/20
RA	293	.	NC_000913	581127	0	G	A	bias_e_value=3206180	bias_p_value=0.690742	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.9	fisher_strand_p_value=0.509952	frequency=3.415e-01	ks_quality_p_value=0.638126	major_base=G	major_cov=14/13	major_frequency=6.585e-01	minor_base=A	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=3.415e-01	polymorphism_score=34.5	prediction=polymorphism	ref_cov=14/13	total_cov=19/23
RA	294	.	NC_000913	581133	0	A	G	bias_e_value=3701120	bias_p_value=0.797371	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.5	fisher_strand_p_value=0.522904	frequency=3.256e-01	ks_quality_p_value=0.832521	major_base=A	major_cov=14/15	major_frequency=6.744e-01	minor_base=G	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=3.256e-01	polymorphism_score=37.4	prediction=polymorphism	ref_cov=14/15	total_cov=19/24
RA	295	.	NC_000913	581227	0	A	C	bias_e_value=2829470	bias_p_value=0.609582	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.3	fisher_strand_p_value=0.560805	frequency=4.348e-01	ks_quality_p_value=0.46275	major_base=A	major_cov=13/13	major_frequency=5.652e-01	minor_base=C	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=4.348e-01	polymorphism_score=51.4	prediction=polymorphism	ref_cov=13/13	total_cov=25/21
RA	296	.	NC_000913	599761	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=103.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=A	major_cov=16/15	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=1/0	total_cov=17/15
RA	297	.	NC_000913	604759	0	G	A	bias_e_value=3444430	bias_p_value=0.742069	consensus_score=101.6	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=0.997986	major_base=A	major_cov=20/11	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=20/11	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/12
RA	298	.	NC_000913	625977	0	G	A	consensus_score=175.6	frequency=1	major_base=A	major_cov=22/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/27
RA	299	.	NC_000913	631633	0	G	A	bias_e_value=4631130	bias_p_value=0.997734	consensus_score=157.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.933441	major_base=A	major_cov=23/25	major_frequency=9.796e-01	minor_base=G	minor_cov=0/1	new_cov=23/25	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/26
RA	300	.	NC_000913	637484	0	T	C	consensus_score=128.1	frequency=1	major_base=C	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	301	.	NC_000913	725370	0	G	A	bias_e_value=4586120	bias_p_value=0.988036	consensus_score=163.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.849353	major_base=A	major_cov=30/22	major_frequency=9.811e-01	minor_base=C	minor_cov=1/0	new_cov=30/22	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	302	.	NC_000913	728024	0	T	A	bias_e_value=70.687	bias_p_value=1.52289e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.9	fisher_strand_p_value=1.02995e-06	frequency=3.611e-01	ks_quality_p_value=1	major_base=T	major_cov=19/4	major_frequency=6.389e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=3.611e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=19/4	total_cov=19/17
RA	303	.	NC_000913	728358	0	G	A	consensus_score=122.2	frequency=1	major_base=A	major_cov=22/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/14
RA	304	.	NC_000913	729707	0	G	A	bias_e_value=3974170	bias_p_value=0.856197	consensus_score=95.0	fisher_strand_p_value=0.51417	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/15	major_frequency=9.487e-01	minor_base=G	minor_cov=2/0	new_cov=22/15	polymorphism_frequency=9.487e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=2/0	total_cov=25/15
RA	305	.	NC_000913	738456	0	G	A	consensus_score=60.4	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	306	.	NC_000913	752785	0	C	T	consensus_score=52.5	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	307	.	NC_000913	755646	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=148.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99899	major_base=T	major_cov=20/24	major_frequency=9.778e-01	minor_base=G	minor_cov=0/1	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	308	.	NC_000913	787088	0	G	A	consensus_score=142.9	frequency=1	major_base=A	major_cov=22/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/18
RA	309	.	NC_000913	788604	0	G	A	bias_e_value=3842600	bias_p_value=0.827851	consensus_score=143.0	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.995365	major_base=A	major_cov=22/19	major_frequency=9.762e-01	minor_base=T	minor_cov=0/1	new_cov=22/19	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	310	.	NC_000913	796803	0	G	A	consensus_score=141.3	frequency=1	major_base=A	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	311	.	NC_000913	799060	0	G	A	consensus_score=130.1	frequency=1	major_base=A	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	312	.	NC_000913	811702	0	C	T	bias_e_value=4639520	bias_p_value=0.999541	consensus_score=151.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969852	major_base=T	major_cov=24/24	major_frequency=9.796e-01	minor_base=.	minor_cov=0/1	new_cov=24/24	polymorphism_frequency=9.796e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	313	.	NC_000913	811945	0	G	A	consensus_score=153.3	frequency=1	major_base=A	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	314	.	NC_000913	813530	0	G	A	bias_e_value=4005250	bias_p_value=0.862894	consensus_score=140.4	fisher_strand_p_value=0.52439	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/15	major_frequency=9.512e-01	minor_base=T	minor_cov=2/0	new_cov=24/15	polymorphism_frequency=9.512e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=26/15
RA	315	.	NC_000913	815815	0	G	A	bias_e_value=770266	bias_p_value=0.165946	consensus_score=54.8	fisher_strand_p_value=0.0391304	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/8	major_frequency=8.077e-01	minor_base=C	minor_cov=0/5	new_cov=13/8	polymorphism_frequency=8.077e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	316	.	NC_000913	819146	0	G	A	consensus_score=125.7	frequency=1	major_base=A	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	317	.	NC_000913	822704	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=122.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9985	major_base=A	major_cov=18/18	major_frequency=9.730e-01	minor_base=C	minor_cov=0/1	new_cov=18/18	polymorphism_frequency=9.730e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	318	.	NC_000913	823045	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=114.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998781	major_base=A	major_cov=22/18	major_frequency=9.756e-01	minor_base=C	minor_cov=1/0	new_cov=22/18	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	319	.	NC_000913	830066	0	G	A	consensus_score=119.7	frequency=1	major_base=A	major_cov=12/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/25
RA	320	.	NC_000913	838696	0	G	A	bias_e_value=3656940	bias_p_value=0.787853	consensus_score=89.9	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.989474	major_base=A	major_cov=11/16	major_frequency=9.643e-01	minor_base=G	minor_cov=1/0	new_cov=11/16	polymorphism_frequency=9.643e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=12/16
RA	321	.	NC_000913	842503	0	G	A	bias_e_value=3653020	bias_p_value=0.787008	consensus_score=69.3	fisher_strand_p_value=0.423077	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/10	major_frequency=9.615e-01	minor_base=G	minor_cov=0/1	new_cov=15/10	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/11
RA	322	.	NC_000913	843739	0	G	A	consensus_score=77.6	frequency=1	major_base=A	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	323	.	NC_000913	844802	0	G	A	consensus_score=124.2	frequency=1	major_base=A	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	324	.	NC_000913	848363	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=74.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/13	major_frequency=9.565e-01	minor_base=G	minor_cov=0/1	new_cov=9/13	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=9/14
RA	325	.	NC_000913	865779	0	G	A	bias_e_value=3200500	bias_p_value=0.689517	consensus_score=118.4	fisher_strand_p_value=0.324324	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/11	major_frequency=9.730e-01	minor_base=C	minor_cov=0/1	new_cov=25/11	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/12
RA	326	.	NC_000913	868647	0	G	A	consensus_score=62.6	frequency=1	major_base=A	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	327	.	NC_000913	871029	0	G	A	consensus_score=152.5	frequency=1	major_base=A	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	328	.	NC_000913	879819	0	T	C	consensus_score=113.6	frequency=1	major_base=C	major_cov=17/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	329	.	NC_000913	884185	0	G	A	bias_e_value=2139320	bias_p_value=0.460897	consensus_score=79.6	fisher_strand_p_value=0.164223	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/17	major_frequency=8.529e-01	minor_base=G	minor_cov=4/1	new_cov=12/17	polymorphism_frequency=8.529e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=4/1	total_cov=16/18
RA	330	.	NC_000913	902912	0	G	A	consensus_score=170.8	frequency=1	major_base=A	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	331	.	NC_000913	904961	0	T	G	bias_e_value=8.79159	bias_p_value=1.89407e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.7	fisher_strand_p_value=1.11346e-07	frequency=3.784e-01	ks_quality_p_value=1	major_base=T	major_cov=3/20	major_frequency=6.216e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.784e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=3/20	total_cov=17/20
RA	332	.	NC_000913	908882	0	G	A	consensus_score=127.0	frequency=1	major_base=A	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	333	.	NC_000913	914372	0	G	A	consensus_score=95.1	frequency=1	major_base=A	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	334	.	NC_000913	920786	0	G	A	consensus_score=183.4	frequency=1	major_base=A	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	335	.	NC_000913	931091	0	T	C	bias_e_value=3565370	bias_p_value=0.768124	consensus_score=119.7	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=0.929068	major_base=C	major_cov=21/15	major_frequency=9.730e-01	minor_base=T	minor_cov=0/1	new_cov=21/15	polymorphism_frequency=9.730e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=21/16
RA	336	.	NC_000913	944547	0	G	A	bias_e_value=3729110	bias_p_value=0.803401	consensus_score=146.1	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.995968	major_base=A	major_cov=25/19	major_frequency=9.778e-01	minor_base=T	minor_cov=0/1	new_cov=25/19	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/20
RA	337	.	NC_000913	957879	0	G	A	consensus_score=103.4	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	338	.	NC_000913	982235	0	G	A	consensus_score=140.4	frequency=1	major_base=A	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	339	.	NC_000913	987152	0	G	T	consensus_score=59.5	frequency=1	major_base=T	major_cov=3/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/15
RA	340	.	NC_000913	991897	0	G	A	consensus_score=187.3	frequency=1	major_base=A	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	341	.	NC_000913	994029	0	G	A	bias_e_value=4641550	bias_p_value=0.999978	consensus_score=116.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9933	major_base=A	major_cov=18/16	major_frequency=9.714e-01	minor_base=.	minor_cov=1/0	new_cov=18/16	polymorphism_frequency=9.714e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	342	.	NC_000913	995030	0	G	A	bias_e_value=3252480	bias_p_value=0.700715	consensus_score=110.3	fisher_strand_p_value=0.342105	frequency=1	ks_quality_p_value=0.977497	major_base=A	major_cov=25/12	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=25/12	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/13
RA	343	.	NC_000913	1022447	0	G	A	consensus_score=142.0	frequency=1	major_base=A	major_cov=13/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/27
RA	344	.	NC_000913	1064331	0	G	A	consensus_score=71.7	frequency=1	major_base=A	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	345	.	NC_000913	1086957	0	G	A	bias_e_value=3584260	bias_p_value=0.772195	consensus_score=104.5	fisher_strand_p_value=0.40625	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/12	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=19/12	polymorphism_frequency=9.688e-01	polymorphism_score=-6.9	prediction=consensus	ref_cov=0/1	total_cov=19/13
RA	346	.	NC_000913	1089330	0	G	A	bias_e_value=4638590	bias_p_value=0.99934	consensus_score=93.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.963887	major_base=A	major_cov=18/11	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=18/11	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	347	.	NC_000913	1196220	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=46.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/10	major_frequency=9.474e-01	minor_base=G	minor_cov=0/1	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	348	.	NC_000913	1196232	0	C	T	consensus_score=41.2	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	349	.	NC_000913	1196245	0	T	C	consensus_score=39.8	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	350	.	NC_000913	1196247	0	A	G	consensus_score=39.5	frequency=1	major_base=G	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	351	.	NC_000913	1196277	0	C	T	consensus_score=17.9	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	352	.	NC_000913	1196280	0	G	C	consensus_score=18.8	frequency=1	major_base=C	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	353	.	NC_000913	1196283	0	A	G	consensus_score=15.5	frequency=1	major_base=G	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	354	.	NC_000913	1196292	0	C	T	consensus_score=15.9	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	355	.	NC_000913	1196304	0	G	A	consensus_score=14.7	frequency=1	major_base=A	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	356	.	NC_000913	1231363	0	G	A	bias_e_value=4641460	bias_p_value=0.999958	consensus_score=100.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990847	major_base=A	major_cov=16/13	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=16/13	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	357	.	NC_000913	1237855	0	C	T	consensus_score=112.7	frequency=1	major_base=T	major_cov=23/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/13
RA	358	.	NC_000913	1260255	0	C	T	consensus_score=138.2	frequency=1	major_base=T	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	359	.	NC_000913	1261842	0	T	G	bias_e_value=4.99485	bias_p_value=1.07609e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.4	fisher_strand_p_value=6.11045e-08	frequency=3.659e-01	ks_quality_p_value=1	major_base=T	major_cov=4/22	major_frequency=6.341e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=3.659e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=4/22	total_cov=19/22
RA	360	.	NC_000913	1290881	0	C	T	consensus_score=50.0	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	361	.	NC_000913	1337394	0	A	G	consensus_score=73.9	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	362	.	NC_000913	1353758	0	T	A	bias_e_value=2732970	bias_p_value=0.588793	consensus_score=143.9	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=0.500505	major_base=A	major_cov=22/20	major_frequency=9.767e-01	minor_base=T	minor_cov=0/1	new_cov=22/20	polymorphism_frequency=9.767e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=22/21
RA	363	.	NC_000913	1423338	0	G	C	bias_e_value=4263940	bias_p_value=0.918625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.6	fisher_strand_p_value=0.772337	frequency=2.615e-01	ks_quality_p_value=0.808881	major_base=G	major_cov=31/17	major_frequency=7.385e-01	minor_base=C	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=2.615e-01	polymorphism_score=56.6	prediction=polymorphism	ref_cov=31/17	total_cov=41/24
RA	364	.	NC_000913	1423404	0	G	T	bias_e_value=765671	bias_p_value=0.164957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.6	fisher_strand_p_value=0.582523	frequency=2.615e-01	ks_quality_p_value=0.0666503	major_base=G	major_cov=24/24	major_frequency=7.385e-01	minor_base=T	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=2.615e-01	polymorphism_score=46.8	prediction=polymorphism	ref_cov=24/24	total_cov=34/31
RA	365	.	NC_000913	1429021	0	T	A	bias_e_value=4507010	bias_p_value=0.970992	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.5	fisher_strand_p_value=0.769013	frequency=3.269e-01	ks_quality_p_value=1	major_base=T	major_cov=16/19	major_frequency=6.731e-01	minor_base=A	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.269e-01	polymorphism_score=46.2	prediction=polymorphism	ref_cov=16/19	total_cov=25/27
RA	366	.	NC_000913	1429022	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.5	fisher_strand_p_value=1	frequency=3.077e-01	ks_quality_p_value=1	major_base=T	major_cov=17/19	major_frequency=6.923e-01	minor_base=A	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.077e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=17/19	total_cov=25/27
RA	367	.	NC_000913	1429024	0	A	C	bias_e_value=4574510	bias_p_value=0.985535	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.2	fisher_strand_p_value=1	frequency=3.077e-01	ks_quality_p_value=0.834806	major_base=A	major_cov=17/19	major_frequency=6.923e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.077e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=17/19	total_cov=25/27
RA	368	.	NC_000913	1429027	0	C	T	bias_e_value=4623650	bias_p_value=0.996123	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.0	fisher_strand_p_value=1	frequency=3.137e-01	ks_quality_p_value=0.91324	major_base=C	major_cov=17/18	major_frequency=6.863e-01	minor_base=T	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.137e-01	polymorphism_score=38.3	prediction=polymorphism	ref_cov=17/18	total_cov=25/26
RA	369	.	NC_000913	1429069	0	T	A	bias_e_value=167469	bias_p_value=0.0360796	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.1	fisher_strand_p_value=0.771014	frequency=4.167e-01	ks_quality_p_value=0.00762601	major_base=T	major_cov=15/13	major_frequency=5.833e-01	minor_base=A	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=4.167e-01	polymorphism_score=64.4	prediction=polymorphism	ref_cov=15/13	total_cov=28/22
RA	370	.	NC_000913	1429072	0	A	C	bias_e_value=2052900	bias_p_value=0.442277	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=0.778044	frequency=3.922e-01	ks_quality_p_value=0.198051	major_base=A	major_cov=17/14	major_frequency=6.078e-01	minor_base=C	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=3.922e-01	polymorphism_score=64.2	prediction=polymorphism	ref_cov=17/14	total_cov=29/22
RA	371	.	NC_000913	1429111	0	A	C	bias_e_value=2976410	bias_p_value=0.64124	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.6	fisher_strand_p_value=0.586362	frequency=4.576e-01	ks_quality_p_value=0.483998	major_base=A	major_cov=22/10	major_frequency=5.424e-01	minor_base=C	minor_cov=16/11	new_cov=16/11	polymorphism_frequency=4.576e-01	polymorphism_score=90.3	prediction=polymorphism	ref_cov=22/10	total_cov=38/21
RA	372	.	NC_000913	1429114	0	C	T	bias_e_value=1037350	bias_p_value=0.223487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.4	fisher_strand_p_value=0.427868	frequency=4.500e-01	ks_quality_p_value=0.135837	major_base=C	major_cov=23/10	major_frequency=5.500e-01	minor_base=T	minor_cov=16/11	new_cov=16/11	polymorphism_frequency=4.500e-01	polymorphism_score=79.7	prediction=polymorphism	ref_cov=23/10	total_cov=39/21
RA	373	.	NC_000913	1429126	0	A	C	bias_e_value=4444750	bias_p_value=0.957579	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.9	fisher_strand_p_value=0.791694	frequency=4.603e-01	ks_quality_p_value=0.913528	major_base=A	major_cov=23/11	major_frequency=5.397e-01	minor_base=C	minor_cov=18/11	new_cov=18/11	polymorphism_frequency=4.603e-01	polymorphism_score=95.1	prediction=polymorphism	ref_cov=23/11	total_cov=41/22
RA	374	.	NC_000913	1429128	0	A	G	bias_e_value=2238320	bias_p_value=0.482224	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.7	fisher_strand_p_value=0.791694	frequency=4.603e-01	ks_quality_p_value=0.222646	major_base=A	major_cov=23/11	major_frequency=5.397e-01	minor_base=G	minor_cov=18/11	new_cov=18/11	polymorphism_frequency=4.603e-01	polymorphism_score=92.5	prediction=polymorphism	ref_cov=23/11	total_cov=41/22
RA	375	.	NC_000913	1429160	0	C	G	bias_e_value=1806340	bias_p_value=0.389159	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.2	fisher_strand_p_value=1	frequency=4.189e-01	ks_quality_p_value=0.127042	major_base=C	major_cov=28/15	major_frequency=5.811e-01	minor_base=G	minor_cov=20/11	new_cov=20/11	polymorphism_frequency=4.189e-01	polymorphism_score=113.8	prediction=polymorphism	ref_cov=28/15	total_cov=49/27
RA	376	.	NC_000913	1429164	0	C	G	bias_e_value=615571	bias_p_value=0.132619	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.3	fisher_strand_p_value=1	frequency=4.133e-01	ks_quality_p_value=0.0292674	major_base=C	major_cov=28/16	major_frequency=5.867e-01	minor_base=G	minor_cov=20/11	new_cov=20/11	polymorphism_frequency=4.133e-01	polymorphism_score=110.7	prediction=polymorphism	ref_cov=28/16	total_cov=48/27
RA	377	.	NC_000913	1429171	0	A	G	bias_e_value=1599020	bias_p_value=0.344494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.2	fisher_strand_p_value=0.815141	frequency=4.103e-01	ks_quality_p_value=0.130365	major_base=A	major_cov=30/16	major_frequency=5.897e-01	minor_base=G	minor_cov=20/12	new_cov=20/12	polymorphism_frequency=4.103e-01	polymorphism_score=100.3	prediction=polymorphism	ref_cov=30/16	total_cov=50/28
RA	378	.	NC_000913	1429204	0	C	T	bias_e_value=137200	bias_p_value=0.0295584	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.9	fisher_strand_p_value=0.627428	frequency=4.324e-01	ks_quality_p_value=0.00739156	major_base=C	major_cov=28/14	major_frequency=5.676e-01	minor_base=T	minor_cov=19/13	new_cov=19/13	polymorphism_frequency=4.324e-01	polymorphism_score=93.3	prediction=polymorphism	ref_cov=28/14	total_cov=47/28
RA	379	.	NC_000913	1429207	0	T	G	bias_e_value=27782.2	bias_p_value=0.00598541	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.0	fisher_strand_p_value=0.156021	frequency=4.933e-01	ks_quality_p_value=0.00466379	major_base=T	major_cov=27/11	major_frequency=5.067e-01	minor_base=G	minor_cov=20/17	new_cov=20/17	polymorphism_frequency=4.933e-01	polymorphism_score=121.2	prediction=polymorphism	ref_cov=27/11	total_cov=47/28
RA	380	.	NC_000913	1429225	0	C	T	bias_e_value=12252.1	bias_p_value=0.00263961	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.588182	frequency=3.810e-01	ks_quality_p_value=0.00049041	major_base=C	major_cov=24/15	major_frequency=6.190e-01	minor_base=T	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.810e-01	polymorphism_score=66.8	prediction=polymorphism	ref_cov=24/15	total_cov=41/23
RA	381	.	NC_000913	1429228	0	T	C	bias_e_value=2564.89	bias_p_value=0.00055258	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.4	fisher_strand_p_value=0.423964	frequency=3.810e-01	ks_quality_p_value=0.0001197	major_base=T	major_cov=23/16	major_frequency=6.190e-01	minor_base=C	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.810e-01	polymorphism_score=71.0	prediction=polymorphism	ref_cov=23/16	total_cov=40/23
RA	382	.	NC_000913	1429231	0	T	C	bias_e_value=13038.4	bias_p_value=0.002809	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.1	fisher_strand_p_value=0.791204	frequency=3.846e-01	ks_quality_p_value=0.000390953	major_base=T	major_cov=25/15	major_frequency=6.154e-01	minor_base=C	minor_cov=17/8	new_cov=17/8	polymorphism_frequency=3.846e-01	polymorphism_score=73.2	prediction=polymorphism	ref_cov=25/15	total_cov=42/23
RA	383	.	NC_000913	1429235	0	T	C	bias_e_value=6897.24	bias_p_value=0.00148595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.3	fisher_strand_p_value=0.591754	frequency=3.750e-01	ks_quality_p_value=0.000256406	major_base=T	major_cov=25/15	major_frequency=6.250e-01	minor_base=C	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.750e-01	polymorphism_score=73.6	prediction=polymorphism	ref_cov=25/15	total_cov=42/23
RA	384	.	NC_000913	1429236	0	T	A	bias_e_value=153070	bias_p_value=0.0329774	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.7	fisher_strand_p_value=0.783903	frequency=4.000e-01	ks_quality_p_value=0.00673795	major_base=T	major_cov=24/12	major_frequency=6.000e-01	minor_base=A	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=4.000e-01	polymorphism_score=81.7	prediction=polymorphism	ref_cov=24/12	total_cov=41/23
RA	385	.	NC_000913	1429240	0	G	T	bias_e_value=1157.82	bias_p_value=0.000249441	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.1	fisher_strand_p_value=0.430704	frequency=3.750e-01	ks_quality_p_value=4.92427e-05	major_base=G	major_cov=24/16	major_frequency=6.250e-01	minor_base=T	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.750e-01	polymorphism_score=75.6	prediction=polymorphism	ref_cov=24/16	total_cov=41/23
RA	386	.	NC_000913	1429243	0	A	C	bias_e_value=591458	bias_p_value=0.127424	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.3	fisher_strand_p_value=0.591452	frequency=3.871e-01	ks_quality_p_value=0.0470144	major_base=A	major_cov=24/14	major_frequency=6.129e-01	minor_base=C	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.871e-01	polymorphism_score=76.7	prediction=polymorphism	ref_cov=24/14	total_cov=41/23
RA	387	.	NC_000913	1429246	0	A	T	bias_e_value=1238760	bias_p_value=0.26688	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.9	fisher_strand_p_value=0.793473	frequency=3.906e-01	ks_quality_p_value=0.093361	major_base=A	major_cov=25/14	major_frequency=6.094e-01	minor_base=T	minor_cov=17/8	new_cov=17/8	polymorphism_frequency=3.906e-01	polymorphism_score=79.3	prediction=polymorphism	ref_cov=25/14	total_cov=42/22
RA	388	.	NC_000913	1429249	0	C	T	bias_e_value=210491	bias_p_value=0.0453483	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.6	fisher_strand_p_value=0.78371	frequency=3.810e-01	ks_quality_p_value=0.00987122	major_base=C	major_cov=25/14	major_frequency=6.190e-01	minor_base=T	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.810e-01	polymorphism_score=70.2	prediction=polymorphism	ref_cov=25/14	total_cov=43/22
RA	389	.	NC_000913	1429252	0	G	A	bias_e_value=97836.1	bias_p_value=0.0210779	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.6	fisher_strand_p_value=0.596919	frequency=3.692e-01	ks_quality_p_value=0.00521399	major_base=G	major_cov=26/15	major_frequency=6.308e-01	minor_base=A	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.692e-01	polymorphism_score=65.8	prediction=polymorphism	ref_cov=26/15	total_cov=43/22
RA	390	.	NC_000913	1429255	0	G	A	bias_e_value=1036410	bias_p_value=0.223285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.9	fisher_strand_p_value=0.596919	frequency=3.692e-01	ks_quality_p_value=0.0972483	major_base=G	major_cov=26/15	major_frequency=6.308e-01	minor_base=A	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.692e-01	polymorphism_score=69.3	prediction=polymorphism	ref_cov=26/15	total_cov=43/22
RA	391	.	NC_000913	1429258	0	A	G	bias_e_value=402781	bias_p_value=0.0867754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.3	fisher_strand_p_value=0.596919	frequency=3.692e-01	ks_quality_p_value=0.0286887	major_base=A	major_cov=26/15	major_frequency=6.308e-01	minor_base=G	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.692e-01	polymorphism_score=71.2	prediction=polymorphism	ref_cov=26/15	total_cov=44/22
RA	392	.	NC_000913	1429261	0	T	C	bias_e_value=3078750	bias_p_value=0.663287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.1	fisher_strand_p_value=0.59347	frequency=3.636e-01	ks_quality_p_value=0.508441	major_base=T	major_cov=26/16	major_frequency=6.364e-01	minor_base=C	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.636e-01	polymorphism_score=67.5	prediction=polymorphism	ref_cov=26/16	total_cov=43/23
RA	393	.	NC_000913	1429273	0	T	C	bias_e_value=1981360	bias_p_value=0.426865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.8	fisher_strand_p_value=0.59347	frequency=3.636e-01	ks_quality_p_value=0.245957	major_base=T	major_cov=26/16	major_frequency=6.364e-01	minor_base=C	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=3.636e-01	polymorphism_score=73.2	prediction=polymorphism	ref_cov=26/16	total_cov=43/23
RA	394	.	NC_000913	1429291	0	T	A	bias_e_value=4451630	bias_p_value=0.959061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.7	fisher_strand_p_value=0.786033	frequency=3.788e-01	ks_quality_p_value=0.925986	major_base=T	major_cov=27/14	major_frequency=6.212e-01	minor_base=A	minor_cov=18/7	new_cov=18/7	polymorphism_frequency=3.788e-01	polymorphism_score=82.7	prediction=polymorphism	ref_cov=27/14	total_cov=45/21
RA	395	.	NC_000913	1429297	0	C	G	bias_e_value=2905710	bias_p_value=0.626008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.1	fisher_strand_p_value=0.597735	frequency=3.846e-01	ks_quality_p_value=0.454893	major_base=C	major_cov=26/14	major_frequency=6.154e-01	minor_base=G	minor_cov=18/7	new_cov=18/7	polymorphism_frequency=3.846e-01	polymorphism_score=92.1	prediction=polymorphism	ref_cov=26/14	total_cov=44/21
RA	396	.	NC_000913	1429300	0	T	G	bias_e_value=1272360	bias_p_value=0.274118	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=0.592643	frequency=4.032e-01	ks_quality_p_value=0.129725	major_base=T	major_cov=24/13	major_frequency=5.968e-01	minor_base=G	minor_cov=18/7	new_cov=18/7	polymorphism_frequency=4.032e-01	polymorphism_score=77.1	prediction=polymorphism	ref_cov=24/13	total_cov=43/21
RA	397	.	NC_000913	1429319	0	G	T	bias_e_value=614520	bias_p_value=0.132393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.7	fisher_strand_p_value=1	frequency=3.651e-01	ks_quality_p_value=0.0292034	major_base=G	major_cov=25/15	major_frequency=6.349e-01	minor_base=T	minor_cov=15/8	new_cov=15/8	polymorphism_frequency=3.651e-01	polymorphism_score=75.7	prediction=polymorphism	ref_cov=25/15	total_cov=40/23
RA	398	.	NC_000913	1429345	0	T	G	bias_e_value=2410350	bias_p_value=0.519287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.0	fisher_strand_p_value=1	frequency=4.026e-01	ks_quality_p_value=0.198388	major_base=T	major_cov=27/19	major_frequency=5.974e-01	minor_base=G	minor_cov=19/12	new_cov=19/12	polymorphism_frequency=4.026e-01	polymorphism_score=92.1	prediction=polymorphism	ref_cov=27/19	total_cov=46/31
RA	399	.	NC_000913	1429353	0	C	T	bias_e_value=2652160	bias_p_value=0.571383	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.1	fisher_strand_p_value=0.810201	frequency=3.784e-01	ks_quality_p_value=0.286709	major_base=C	major_cov=26/20	major_frequency=6.216e-01	minor_base=T	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=3.784e-01	polymorphism_score=74.8	prediction=polymorphism	ref_cov=26/20	total_cov=43/31
RA	400	.	NC_000913	1429354	0	A	G	bias_e_value=92281	bias_p_value=0.0198811	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=0.810201	frequency=3.784e-01	ks_quality_p_value=0.00358702	major_base=A	major_cov=26/20	major_frequency=6.216e-01	minor_base=G	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=3.784e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=26/20	total_cov=44/31
RA	401	.	NC_000913	1429360	0	C	T	bias_e_value=1595650	bias_p_value=0.343768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.9	fisher_strand_p_value=0.810052	frequency=3.867e-01	ks_quality_p_value=0.130785	major_base=C	major_cov=26/20	major_frequency=6.133e-01	minor_base=T	minor_cov=18/11	new_cov=18/11	polymorphism_frequency=3.867e-01	polymorphism_score=80.9	prediction=polymorphism	ref_cov=26/20	total_cov=44/31
RA	402	.	NC_000913	1429364	0	T	C	bias_e_value=502765	bias_p_value=0.108316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.1	fisher_strand_p_value=1	frequency=3.816e-01	ks_quality_p_value=0.0226175	major_base=T	major_cov=28/19	major_frequency=6.184e-01	minor_base=C	minor_cov=18/11	new_cov=18/11	polymorphism_frequency=3.816e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=28/19	total_cov=46/30
RA	403	.	NC_000913	1429404	0	C	T	bias_e_value=225658	bias_p_value=0.0486158	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.8	fisher_strand_p_value=0.624259	frequency=4.058e-01	ks_quality_p_value=0.0134787	major_base=C	major_cov=26/15	major_frequency=5.942e-01	minor_base=T	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=4.058e-01	polymorphism_score=81.7	prediction=polymorphism	ref_cov=26/15	total_cov=42/27
RA	404	.	NC_000913	1429416	0	A	G	bias_e_value=4402880	bias_p_value=0.948558	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.0	fisher_strand_p_value=0.80132	frequency=3.824e-01	ks_quality_p_value=0.869684	major_base=A	major_cov=26/16	major_frequency=6.176e-01	minor_base=G	minor_cov=15/11	new_cov=15/11	polymorphism_frequency=3.824e-01	polymorphism_score=76.9	prediction=polymorphism	ref_cov=26/16	total_cov=41/27
RA	405	.	NC_000913	1429417	0	C	T	bias_e_value=4490510	bias_p_value=0.967438	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.1	fisher_strand_p_value=1	frequency=3.939e-01	ks_quality_p_value=0.755907	major_base=C	major_cov=24/16	major_frequency=6.061e-01	minor_base=T	minor_cov=15/11	new_cov=15/11	polymorphism_frequency=3.939e-01	polymorphism_score=71.5	prediction=polymorphism	ref_cov=24/16	total_cov=41/27
RA	406	.	NC_000913	1429425	0	C	A	bias_e_value=296000	bias_p_value=0.0637703	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.3	fisher_strand_p_value=1	frequency=3.714e-01	ks_quality_p_value=0.011706	major_base=C	major_cov=27/17	major_frequency=6.286e-01	minor_base=A	minor_cov=16/10	new_cov=16/10	polymorphism_frequency=3.714e-01	polymorphism_score=76.9	prediction=polymorphism	ref_cov=27/17	total_cov=43/27
RA	407	.	NC_000913	1429435	0	G	A	bias_e_value=3697640	bias_p_value=0.796622	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.6	fisher_strand_p_value=0.794645	frequency=3.478e-01	ks_quality_p_value=0.546695	major_base=G	major_cov=29/16	major_frequency=6.522e-01	minor_base=A	minor_cov=14/10	new_cov=14/10	polymorphism_frequency=3.478e-01	polymorphism_score=65.3	prediction=polymorphism	ref_cov=29/16	total_cov=43/26
RA	408	.	NC_000913	1429442	0	A	G	bias_e_value=4288200	bias_p_value=0.923853	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.1	fisher_strand_p_value=0.788586	frequency=3.235e-01	ks_quality_p_value=0.806582	major_base=A	major_cov=30/16	major_frequency=6.765e-01	minor_base=G	minor_cov=13/9	new_cov=13/9	polymorphism_frequency=3.235e-01	polymorphism_score=57.1	prediction=polymorphism	ref_cov=30/16	total_cov=43/25
RA	409	.	NC_000913	1429444	0	T	C	bias_e_value=4185480	bias_p_value=0.901723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.7	fisher_strand_p_value=0.789227	frequency=3.284e-01	ks_quality_p_value=0.748576	major_base=T	major_cov=29/16	major_frequency=6.716e-01	minor_base=C	minor_cov=13/9	new_cov=13/9	polymorphism_frequency=3.284e-01	polymorphism_score=56.4	prediction=polymorphism	ref_cov=29/16	total_cov=43/25
RA	410	.	NC_000913	1429453	0	C	T	bias_e_value=1878200	bias_p_value=0.404639	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.8	fisher_strand_p_value=0.4031	frequency=3.281e-01	ks_quality_p_value=0.334044	major_base=C	major_cov=30/13	major_frequency=6.719e-01	minor_base=T	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=3.281e-01	polymorphism_score=56.1	prediction=polymorphism	ref_cov=30/13	total_cov=42/24
RA	411	.	NC_000913	1429454	0	A	G	bias_e_value=2021740	bias_p_value=0.435565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.6	fisher_strand_p_value=0.585761	frequency=3.231e-01	ks_quality_p_value=0.256975	major_base=A	major_cov=29/15	major_frequency=6.769e-01	minor_base=G	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=3.231e-01	polymorphism_score=60.9	prediction=polymorphism	ref_cov=29/15	total_cov=42/24
RA	412	.	NC_000913	1429462	0	C	T	bias_e_value=3264230	bias_p_value=0.703248	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.5	fisher_strand_p_value=0.591375	frequency=3.134e-01	ks_quality_p_value=0.569397	major_base=C	major_cov=30/16	major_frequency=6.866e-01	minor_base=T	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=3.134e-01	polymorphism_score=53.0	prediction=polymorphism	ref_cov=30/16	total_cov=43/25
RA	413	.	NC_000913	1429463	0	C	G	bias_e_value=1098620	bias_p_value=0.236688	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.6	fisher_strand_p_value=0.588489	frequency=3.088e-01	ks_quality_p_value=0.106757	major_base=C	major_cov=31/16	major_frequency=6.912e-01	minor_base=G	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=3.088e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=31/16	total_cov=43/25
RA	414	.	NC_000913	1429464	0	G	C	bias_e_value=562258	bias_p_value=0.121133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.5	fisher_strand_p_value=0.597118	frequency=3.043e-01	ks_quality_p_value=0.0436536	major_base=G	major_cov=31/17	major_frequency=6.957e-01	minor_base=C	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=3.043e-01	polymorphism_score=73.5	prediction=polymorphism	ref_cov=31/17	total_cov=43/26
RA	415	.	NC_000913	1429466	0	G	C	bias_e_value=46779.4	bias_p_value=0.0100782	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.8	fisher_strand_p_value=0.593388	frequency=3.000e-01	ks_quality_p_value=0.00222615	major_base=G	major_cov=32/17	major_frequency=7.000e-01	minor_base=C	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=3.000e-01	polymorphism_score=75.1	prediction=polymorphism	ref_cov=32/17	total_cov=44/26
RA	416	.	NC_000913	1429470	0	C	T	bias_e_value=3522970	bias_p_value=0.758989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.6	fisher_strand_p_value=0.781466	frequency=2.714e-01	ks_quality_p_value=0.501463	major_base=C	major_cov=33/18	major_frequency=7.286e-01	minor_base=T	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=2.714e-01	polymorphism_score=46.8	prediction=polymorphism	ref_cov=33/18	total_cov=44/26
RA	417	.	NC_000913	1429471	0	G	C	bias_e_value=1066000	bias_p_value=0.229659	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.1	fisher_strand_p_value=0.789047	frequency=2.857e-01	ks_quality_p_value=0.0764263	major_base=G	major_cov=32/18	major_frequency=7.143e-01	minor_base=C	minor_cov=12/8	new_cov=12/8	polymorphism_frequency=2.857e-01	polymorphism_score=69.4	prediction=polymorphism	ref_cov=32/18	total_cov=44/26
RA	418	.	NC_000913	1429474	0	A	G	bias_e_value=1008540	bias_p_value=0.21728	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.1	fisher_strand_p_value=0.595344	frequency=2.877e-01	ks_quality_p_value=0.0939851	major_base=A	major_cov=34/18	major_frequency=7.123e-01	minor_base=G	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.877e-01	polymorphism_score=53.6	prediction=polymorphism	ref_cov=34/18	total_cov=46/27
RA	419	.	NC_000913	1429475	0	A	G	bias_e_value=2708230	bias_p_value=0.583462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.0	fisher_strand_p_value=0.595344	frequency=2.877e-01	ks_quality_p_value=0.404253	major_base=A	major_cov=34/18	major_frequency=7.123e-01	minor_base=G	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.877e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=34/18	total_cov=46/27
RA	420	.	NC_000913	1429479	0	A	T	bias_e_value=2887160	bias_p_value=0.622011	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.0	fisher_strand_p_value=0.791173	frequency=2.917e-01	ks_quality_p_value=0.339811	major_base=A	major_cov=32/19	major_frequency=7.083e-01	minor_base=T	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.917e-01	polymorphism_score=63.1	prediction=polymorphism	ref_cov=32/19	total_cov=44/28
RA	421	.	NC_000913	1429482	0	C	T	bias_e_value=2441420	bias_p_value=0.525981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.4	fisher_strand_p_value=0.790816	frequency=2.877e-01	ks_quality_p_value=0.256133	major_base=C	major_cov=33/19	major_frequency=7.123e-01	minor_base=T	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.877e-01	polymorphism_score=51.5	prediction=polymorphism	ref_cov=33/19	total_cov=45/28
RA	422	.	NC_000913	1429484	0	G	A	bias_e_value=1782480	bias_p_value=0.384018	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.3	fisher_strand_p_value=0.598461	frequency=2.917e-01	ks_quality_p_value=0.208137	major_base=G	major_cov=33/18	major_frequency=7.083e-01	minor_base=A	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.917e-01	polymorphism_score=52.3	prediction=polymorphism	ref_cov=33/18	total_cov=45/28
RA	423	.	NC_000913	1429492	0	T	A	bias_e_value=694753	bias_p_value=0.149678	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.1	fisher_strand_p_value=0.791173	frequency=2.917e-01	ks_quality_p_value=0.04324	major_base=T	major_cov=32/19	major_frequency=7.083e-01	minor_base=A	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.917e-01	polymorphism_score=66.0	prediction=polymorphism	ref_cov=32/19	total_cov=44/28
RA	424	.	NC_000913	1429493	0	G	A	bias_e_value=2676520	bias_p_value=0.57663	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.8	fisher_strand_p_value=0.791173	frequency=2.917e-01	ks_quality_p_value=0.298172	major_base=G	major_cov=32/19	major_frequency=7.083e-01	minor_base=A	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.917e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=32/19	total_cov=44/28
RA	425	.	NC_000913	1429495	0	G	T	bias_e_value=140278	bias_p_value=0.0302215	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.0	fisher_strand_p_value=0.791173	frequency=2.917e-01	ks_quality_p_value=0.00601813	major_base=G	major_cov=32/19	major_frequency=7.083e-01	minor_base=T	minor_cov=12/9	new_cov=12/9	polymorphism_frequency=2.917e-01	polymorphism_score=64.6	prediction=polymorphism	ref_cov=32/19	total_cov=44/28
RA	426	.	NC_000913	1429510	0	A	C	bias_e_value=3799820	bias_p_value=0.818636	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.1	fisher_strand_p_value=0.636353	frequency=3.333e-01	ks_quality_p_value=0.725777	major_base=A	major_cov=31/21	major_frequency=6.667e-01	minor_base=C	minor_cov=14/12	new_cov=14/12	polymorphism_frequency=3.333e-01	polymorphism_score=62.7	prediction=polymorphism	ref_cov=31/21	total_cov=45/33
RA	427	.	NC_000913	1429522	0	A	C	bias_e_value=1743290	bias_p_value=0.375574	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.4	fisher_strand_p_value=0.477287	frequency=3.250e-01	ks_quality_p_value=0.252552	major_base=A	major_cov=32/22	major_frequency=6.750e-01	minor_base=C	minor_cov=13/13	new_cov=13/13	polymorphism_frequency=3.250e-01	polymorphism_score=72.5	prediction=polymorphism	ref_cov=32/22	total_cov=45/35
RA	428	.	NC_000913	1429534	0	C	T	bias_e_value=115709	bias_p_value=0.0249283	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.3	fisher_strand_p_value=0.639657	frequency=3.333e-01	ks_quality_p_value=0.00592719	major_base=C	major_cov=29/23	major_frequency=6.667e-01	minor_base=T	minor_cov=13/13	new_cov=13/13	polymorphism_frequency=3.333e-01	polymorphism_score=67.3	prediction=polymorphism	ref_cov=29/23	total_cov=44/36
RA	429	.	NC_000913	1429537	0	G	A	bias_e_value=89793.6	bias_p_value=0.0193452	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=0.632506	frequency=3.210e-01	ks_quality_p_value=0.00445009	major_base=G	major_cov=32/23	major_frequency=6.790e-01	minor_base=A	minor_cov=13/13	new_cov=13/13	polymorphism_frequency=3.210e-01	polymorphism_score=69.4	prediction=polymorphism	ref_cov=32/23	total_cov=45/36
RA	430	.	NC_000913	1429543	0	G	A	bias_e_value=1435570	bias_p_value=0.30928	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.0	fisher_strand_p_value=0.63315	frequency=3.250e-01	ks_quality_p_value=0.143833	major_base=G	major_cov=31/23	major_frequency=6.750e-01	minor_base=A	minor_cov=13/13	new_cov=13/13	polymorphism_frequency=3.250e-01	polymorphism_score=71.1	prediction=polymorphism	ref_cov=31/23	total_cov=45/36
RA	431	.	NC_000913	1429550	0	T	G	bias_e_value=880115	bias_p_value=0.189612	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.0	fisher_strand_p_value=0.473627	frequency=3.049e-01	ks_quality_p_value=0.098479	major_base=T	major_cov=33/24	major_frequency=6.951e-01	minor_base=G	minor_cov=12/13	new_cov=12/13	polymorphism_frequency=3.049e-01	polymorphism_score=76.2	prediction=polymorphism	ref_cov=33/24	total_cov=45/37
RA	432	.	NC_000913	1429551	0	C	A	bias_e_value=311555	bias_p_value=0.0671216	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.6	fisher_strand_p_value=0.473627	frequency=3.049e-01	ks_quality_p_value=0.026318	major_base=C	major_cov=33/24	major_frequency=6.951e-01	minor_base=A	minor_cov=12/13	new_cov=12/13	polymorphism_frequency=3.049e-01	polymorphism_score=76.7	prediction=polymorphism	ref_cov=33/24	total_cov=45/37
RA	433	.	NC_000913	1429558	0	T	C	bias_e_value=4636890	bias_p_value=0.998975	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.6	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.955064	major_base=T	major_cov=33/25	major_frequency=6.667e-01	minor_base=C	minor_cov=16/13	new_cov=16/13	polymorphism_frequency=3.333e-01	polymorphism_score=73.5	prediction=polymorphism	ref_cov=33/25	total_cov=49/38
RA	434	.	NC_000913	1429562	0	A	G	bias_e_value=2522050	bias_p_value=0.543351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.5	fisher_strand_p_value=0.81653	frequency=3.256e-01	ks_quality_p_value=0.261617	major_base=A	major_cov=34/24	major_frequency=6.744e-01	minor_base=G	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=3.256e-01	polymorphism_score=79.3	prediction=polymorphism	ref_cov=34/24	total_cov=49/37
RA	435	.	NC_000913	1429569	0	G	A	bias_e_value=3841130	bias_p_value=0.827536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.0	fisher_strand_p_value=0.629152	frequency=3.125e-01	ks_quality_p_value=0.752698	major_base=G	major_cov=31/24	major_frequency=6.875e-01	minor_base=A	minor_cov=12/13	new_cov=12/13	polymorphism_frequency=3.125e-01	polymorphism_score=63.8	prediction=polymorphism	ref_cov=31/24	total_cov=43/37
RA	436	.	NC_000913	1429571	0	A	G	bias_e_value=1071480	bias_p_value=0.23084	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.3	fisher_strand_p_value=0.340262	frequency=2.963e-01	ks_quality_p_value=0.178466	major_base=A	major_cov=33/24	major_frequency=7.037e-01	minor_base=G	minor_cov=11/13	new_cov=11/13	polymorphism_frequency=2.963e-01	polymorphism_score=65.5	prediction=polymorphism	ref_cov=33/24	total_cov=44/37
RA	437	.	NC_000913	1429580	0	A	G	bias_e_value=2606970	bias_p_value=0.561646	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.2	fisher_strand_p_value=0.301535	frequency=2.800e-01	ks_quality_p_value=0.748462	major_base=A	major_cov=32/22	major_frequency=7.200e-01	minor_base=G	minor_cov=9/12	new_cov=9/12	polymorphism_frequency=2.800e-01	polymorphism_score=56.4	prediction=polymorphism	ref_cov=32/22	total_cov=41/34
RA	438	.	NC_000913	1429597	0	A	G	bias_e_value=1896300	bias_p_value=0.40854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.8	fisher_strand_p_value=0.293604	frequency=2.568e-01	ks_quality_p_value=0.46527	major_base=A	major_cov=34/21	major_frequency=7.432e-01	minor_base=G	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.568e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=34/21	total_cov=43/31
RA	439	.	NC_000913	1429598	0	T	G	bias_e_value=2217300	bias_p_value=0.477696	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.2	fisher_strand_p_value=0.417372	frequency=2.466e-01	ks_quality_p_value=0.416103	major_base=T	major_cov=34/21	major_frequency=7.534e-01	minor_base=G	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.466e-01	polymorphism_score=48.8	prediction=polymorphism	ref_cov=34/21	total_cov=43/31
RA	440	.	NC_000913	1429599	0	C	A	bias_e_value=3103770	bias_p_value=0.668679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.6	fisher_strand_p_value=0.420016	frequency=2.639e-01	ks_quality_p_value=0.729193	major_base=C	major_cov=32/21	major_frequency=7.361e-01	minor_base=A	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.639e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=32/21	total_cov=41/31
RA	441	.	NC_000913	1429609	0	T	C	bias_e_value=2579550	bias_p_value=0.555739	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.9	fisher_strand_p_value=1	frequency=2.273e-01	ks_quality_p_value=0.221742	major_base=T	major_cov=29/22	major_frequency=7.727e-01	minor_base=C	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=2.273e-01	polymorphism_score=35.4	prediction=polymorphism	ref_cov=29/22	total_cov=37/30
RA	442	.	NC_000913	1429612	0	C	A	bias_e_value=4463120	bias_p_value=0.961536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.1	fisher_strand_p_value=1	frequency=2.424e-01	ks_quality_p_value=0.735784	major_base=C	major_cov=28/22	major_frequency=7.576e-01	minor_base=A	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=2.424e-01	polymorphism_score=38.5	prediction=polymorphism	ref_cov=28/22	total_cov=37/30
RA	443	.	NC_000913	1429615	0	T	C	bias_e_value=1864440	bias_p_value=0.401676	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.4	fisher_strand_p_value=0.774418	frequency=2.500e-01	ks_quality_p_value=0.171973	major_base=T	major_cov=27/21	major_frequency=7.500e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=2.500e-01	polymorphism_score=37.6	prediction=polymorphism	ref_cov=27/21	total_cov=36/29
RA	444	.	NC_000913	1429632	0	G	A	bias_e_value=4588160	bias_p_value=0.988476	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.4	fisher_strand_p_value=1	frequency=2.985e-01	ks_quality_p_value=0.852073	major_base=G	major_cov=26/21	major_frequency=7.015e-01	minor_base=A	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=2.985e-01	polymorphism_score=47.2	prediction=polymorphism	ref_cov=26/21	total_cov=38/30
RA	445	.	NC_000913	1429682	0	T	G	bias_e_value=4413380	bias_p_value=0.950821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.2	fisher_strand_p_value=1	frequency=3.671e-01	ks_quality_p_value=0.703241	major_base=T	major_cov=26/24	major_frequency=6.329e-01	minor_base=G	minor_cov=15/14	new_cov=15/14	polymorphism_frequency=3.671e-01	polymorphism_score=76.5	prediction=polymorphism	ref_cov=26/24	total_cov=41/38
RA	446	.	NC_000913	1429692	0	T	A	bias_e_value=3629290	bias_p_value=0.781897	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.7	fisher_strand_p_value=0.660547	frequency=3.765e-01	ks_quality_p_value=0.631571	major_base=T	major_cov=27/26	major_frequency=6.235e-01	minor_base=A	minor_cov=18/14	new_cov=18/14	polymorphism_frequency=3.765e-01	polymorphism_score=101.9	prediction=polymorphism	ref_cov=27/26	total_cov=45/40
RA	447	.	NC_000913	1429702	0	A	C	bias_e_value=3207000	bias_p_value=0.690918	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=0.516578	frequency=3.820e-01	ks_quality_p_value=0.630244	major_base=A	major_cov=28/27	major_frequency=6.180e-01	minor_base=C	minor_cov=20/14	new_cov=20/14	polymorphism_frequency=3.820e-01	polymorphism_score=96.4	prediction=polymorphism	ref_cov=28/27	total_cov=48/41
RA	448	.	NC_000913	1429708	0	A	G	bias_e_value=3279310	bias_p_value=0.706496	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.0	fisher_strand_p_value=0.515361	frequency=3.889e-01	ks_quality_p_value=0.659193	major_base=A	major_cov=28/27	major_frequency=6.111e-01	minor_base=G	minor_cov=21/14	new_cov=21/14	polymorphism_frequency=3.889e-01	polymorphism_score=102.8	prediction=polymorphism	ref_cov=28/27	total_cov=50/41
RA	449	.	NC_000913	1429714	0	A	C	bias_e_value=3460790	bias_p_value=0.745595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.9	fisher_strand_p_value=0.399573	frequency=3.913e-01	ks_quality_p_value=0.945633	major_base=A	major_cov=29/27	major_frequency=6.087e-01	minor_base=C	minor_cov=22/14	new_cov=22/14	polymorphism_frequency=3.913e-01	polymorphism_score=101.7	prediction=polymorphism	ref_cov=29/27	total_cov=51/41
RA	450	.	NC_000913	1429724	0	A	G	bias_e_value=2640870	bias_p_value=0.568951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.3	fisher_strand_p_value=0.278879	frequency=4.045e-01	ks_quality_p_value=0.82699	major_base=A	major_cov=27/26	major_frequency=5.955e-01	minor_base=G	minor_cov=23/13	new_cov=23/13	polymorphism_frequency=4.045e-01	polymorphism_score=97.0	prediction=polymorphism	ref_cov=27/26	total_cov=50/39
RA	451	.	NC_000913	1429732	0	G	A	bias_e_value=1747440	bias_p_value=0.376468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.2	fisher_strand_p_value=0.19921	frequency=3.956e-01	ks_quality_p_value=0.607211	major_base=G	major_cov=27/28	major_frequency=6.044e-01	minor_base=A	minor_cov=23/13	new_cov=23/13	polymorphism_frequency=3.956e-01	polymorphism_score=95.6	prediction=polymorphism	ref_cov=27/28	total_cov=51/41
RA	452	.	NC_000913	1429735	0	A	G	bias_e_value=1932590	bias_p_value=0.416359	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.0	fisher_strand_p_value=0.205773	frequency=3.913e-01	ks_quality_p_value=0.683093	major_base=A	major_cov=28/28	major_frequency=6.087e-01	minor_base=G	minor_cov=23/13	new_cov=23/13	polymorphism_frequency=3.913e-01	polymorphism_score=105.4	prediction=polymorphism	ref_cov=28/28	total_cov=51/41
RA	453	.	NC_000913	1429741	0	A	G	bias_e_value=1399380	bias_p_value=0.301483	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.4	fisher_strand_p_value=0.181678	frequency=3.407e-01	ks_quality_p_value=0.483483	major_base=A	major_cov=31/29	major_frequency=6.593e-01	minor_base=G	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=3.407e-01	polymorphism_score=88.3	prediction=polymorphism	ref_cov=31/29	total_cov=52/39
RA	454	.	NC_000913	1429744	0	T	C	bias_e_value=852726	bias_p_value=0.183712	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.8	fisher_strand_p_value=0.123353	frequency=3.407e-01	ks_quality_p_value=0.362619	major_base=T	major_cov=30/30	major_frequency=6.593e-01	minor_base=C	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=3.407e-01	polymorphism_score=84.6	prediction=polymorphism	ref_cov=30/30	total_cov=51/40
RA	455	.	NC_000913	1429747	0	G	C	bias_e_value=498903	bias_p_value=0.107484	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.5	fisher_strand_p_value=0.256364	frequency=3.409e-01	ks_quality_p_value=0.0873688	major_base=G	major_cov=30/28	major_frequency=6.591e-01	minor_base=C	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=3.409e-01	polymorphism_score=105.3	prediction=polymorphism	ref_cov=30/28	total_cov=51/38
RA	456	.	NC_000913	1429750	0	C	T	bias_e_value=80088.4	bias_p_value=0.0172543	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.5	fisher_strand_p_value=0.180022	frequency=3.483e-01	ks_quality_p_value=0.0136795	major_base=C	major_cov=30/28	major_frequency=6.517e-01	minor_base=T	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=3.483e-01	polymorphism_score=81.9	prediction=polymorphism	ref_cov=30/28	total_cov=51/38
RA	457	.	NC_000913	1429753	0	G	A	bias_e_value=166882	bias_p_value=0.035953	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.4	fisher_strand_p_value=0.178513	frequency=3.563e-01	ks_quality_p_value=0.0327995	major_base=G	major_cov=29/27	major_frequency=6.437e-01	minor_base=A	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=3.563e-01	polymorphism_score=85.7	prediction=polymorphism	ref_cov=29/27	total_cov=50/37
RA	458	.	NC_000913	1429756	0	C	A	bias_e_value=126623	bias_p_value=0.0272797	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.2	fisher_strand_p_value=0.184491	frequency=3.523e-01	ks_quality_p_value=0.022859	major_base=C	major_cov=30/27	major_frequency=6.477e-01	minor_base=A	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=3.523e-01	polymorphism_score=89.6	prediction=polymorphism	ref_cov=30/27	total_cov=51/37
RA	459	.	NC_000913	1429759	0	G	A	bias_e_value=1836030	bias_p_value=0.395556	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.4	fisher_strand_p_value=0.25707	frequency=3.448e-01	ks_quality_p_value=0.506323	major_base=G	major_cov=30/27	major_frequency=6.552e-01	minor_base=A	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=3.448e-01	polymorphism_score=84.5	prediction=polymorphism	ref_cov=30/27	total_cov=51/37
RA	460	.	NC_000913	1429767	0	C	T	bias_e_value=523528	bias_p_value=0.112789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.4	fisher_strand_p_value=0.184491	frequency=3.523e-01	ks_quality_p_value=0.129037	major_base=C	major_cov=30/27	major_frequency=6.477e-01	minor_base=T	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=3.523e-01	polymorphism_score=72.7	prediction=polymorphism	ref_cov=30/27	total_cov=51/37
RA	461	.	NC_000913	1429780	0	A	G	bias_e_value=296335	bias_p_value=0.0638425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.1	fisher_strand_p_value=0.256364	frequency=3.409e-01	ks_quality_p_value=0.045725	major_base=A	major_cov=30/28	major_frequency=6.591e-01	minor_base=G	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=3.409e-01	polymorphism_score=86.7	prediction=polymorphism	ref_cov=30/28	total_cov=50/38
RA	462	.	NC_000913	1429783	0	G	A	bias_e_value=1370610	bias_p_value=0.295284	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.9	fisher_strand_p_value=0.259132	frequency=3.333e-01	ks_quality_p_value=0.329193	major_base=G	major_cov=31/29	major_frequency=6.667e-01	minor_base=A	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=3.333e-01	polymorphism_score=79.6	prediction=polymorphism	ref_cov=31/29	total_cov=51/39
RA	463	.	NC_000913	1429816	0	C	T	bias_e_value=876402	bias_p_value=0.188812	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.0	fisher_strand_p_value=0.0584597	frequency=2.824e-01	ks_quality_p_value=0.793393	major_base=C	major_cov=29/32	major_frequency=7.176e-01	minor_base=T	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=2.824e-01	polymorphism_score=51.5	prediction=polymorphism	ref_cov=29/32	total_cov=46/39
RA	464	.	NC_000913	1429820	0	A	G	bias_e_value=167647	bias_p_value=0.036118	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.9	fisher_strand_p_value=0.0256094	frequency=2.805e-01	ks_quality_p_value=0.229886	major_base=A	major_cov=26/33	major_frequency=7.195e-01	minor_base=G	minor_cov=17/6	new_cov=17/6	polymorphism_frequency=2.805e-01	polymorphism_score=58.0	prediction=polymorphism	ref_cov=26/33	total_cov=45/39
RA	465	.	NC_000913	1429823	0	A	C	bias_e_value=546098	bias_p_value=0.117652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.0	fisher_strand_p_value=0.0278484	frequency=2.738e-01	ks_quality_p_value=0.901903	major_base=A	major_cov=28/33	major_frequency=7.262e-01	minor_base=C	minor_cov=17/6	new_cov=17/6	polymorphism_frequency=2.738e-01	polymorphism_score=44.0	prediction=polymorphism	ref_cov=28/33	total_cov=45/39
RA	466	.	NC_000913	1429851	0	G	A	bias_e_value=885780	bias_p_value=0.190833	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=0.073855	frequency=2.532e-01	ks_quality_p_value=0.636938	major_base=G	major_cov=27/32	major_frequency=7.468e-01	minor_base=A	minor_cov=14/6	new_cov=14/6	polymorphism_frequency=2.532e-01	polymorphism_score=47.3	prediction=polymorphism	ref_cov=27/32	total_cov=41/39
RA	467	.	NC_000913	1429858	0	C	T	bias_e_value=1592920	bias_p_value=0.34318	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.1	fisher_strand_p_value=0.146509	frequency=2.000e-01	ks_quality_p_value=0.721324	major_base=C	major_cov=29/31	major_frequency=8.000e-01	minor_base=T	minor_cov=11/4	new_cov=11/4	polymorphism_frequency=2.000e-01	polymorphism_score=26.2	prediction=polymorphism	ref_cov=29/31	total_cov=40/36
RA	468	.	NC_000913	1466201	0	T	C	bias_e_value=3048530	bias_p_value=0.656777	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.2	fisher_strand_p_value=0.296352	frequency=2.927e-01	ks_quality_p_value=1	major_base=T	major_cov=15/14	major_frequency=7.073e-01	minor_base=C	minor_cov=9/3	new_cov=9/3	polymorphism_frequency=2.927e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=15/14	total_cov=24/17
RA	469	.	NC_000913	1494388	0	C	.	consensus_score=143.8	frequency=1	major_base=.	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	470	.	NC_000913	1517508	0	G	T	consensus_score=90.8	frequency=1	major_base=T	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	471	.	NC_000913	1576911	0	C	A	consensus_score=70.4	frequency=1	major_base=A	major_cov=12/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/12
RA	472	.	NC_000913	1634482	0	T	C	bias_e_value=2505100	bias_p_value=0.539701	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.5	fisher_strand_p_value=0.643665	frequency=6.471e-01	ks_quality_p_value=0.328216	major_base=C	major_cov=4/7	major_frequency=6.471e-01	minor_base=T	minor_cov=3/3	new_cov=4/7	polymorphism_frequency=6.471e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=3/3	total_cov=7/10
RA	473	.	NC_000913	1634484	0	G	T	bias_e_value=4641130	bias_p_value=0.999887	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.3	fisher_strand_p_value=1	frequency=5.882e-01	ks_quality_p_value=0.984988	major_base=T	major_cov=4/6	major_frequency=5.882e-01	minor_base=G	minor_cov=3/4	new_cov=4/6	polymorphism_frequency=5.882e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=3/4	total_cov=7/10
RA	474	.	NC_000913	1634569	0	A	T	bias_e_value=4557310	bias_p_value=0.98183	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.4	fisher_strand_p_value=1	frequency=5.667e-01	ks_quality_p_value=0.815526	major_base=T	major_cov=7/10	major_frequency=5.667e-01	minor_base=A	minor_cov=6/7	new_cov=7/10	polymorphism_frequency=5.667e-01	polymorphism_score=39.4	prediction=polymorphism	ref_cov=6/7	total_cov=13/17
RA	475	.	NC_000913	1634571	0	C	T	bias_e_value=3753850	bias_p_value=0.808732	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=0.724707	frequency=5.484e-01	ks_quality_p_value=0.619912	major_base=T	major_cov=7/10	major_frequency=5.484e-01	minor_base=C	minor_cov=7/7	new_cov=7/10	polymorphism_frequency=5.484e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=7/7	total_cov=14/17
RA	476	.	NC_000913	1634578	0	T	C	bias_e_value=4334490	bias_p_value=0.933826	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=0.728237	frequency=5.588e-01	ks_quality_p_value=0.904931	major_base=C	major_cov=7/12	major_frequency=5.588e-01	minor_base=T	minor_cov=7/8	new_cov=7/12	polymorphism_frequency=5.588e-01	polymorphism_score=36.9	prediction=polymorphism	ref_cov=7/8	total_cov=14/20
RA	477	.	NC_000913	1634597	0	C	A	bias_e_value=2829210	bias_p_value=0.609527	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.3	fisher_strand_p_value=0.537029	frequency=5.854e-01	ks_quality_p_value=0.483162	major_base=A	major_cov=10/14	major_frequency=5.854e-01	minor_base=C	minor_cov=9/8	new_cov=10/14	polymorphism_frequency=5.854e-01	polymorphism_score=53.4	prediction=polymorphism	ref_cov=9/8	total_cov=19/22
RA	478	.	NC_000913	1634658	0	A	G	bias_e_value=2242000	bias_p_value=0.483018	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=0.230733	frequency=6.000e-01	ks_quality_p_value=0.765928	major_base=G	major_cov=11/16	major_frequency=6.000e-01	minor_base=A	minor_cov=11/7	new_cov=11/16	polymorphism_frequency=6.000e-01	polymorphism_score=46.9	prediction=polymorphism	ref_cov=11/7	total_cov=23/23
RA	479	.	NC_000913	1634661	0	C	G	bias_e_value=1788700	bias_p_value=0.385359	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.6	fisher_strand_p_value=0.357977	frequency=5.909e-01	ks_quality_p_value=0.349761	major_base=G	major_cov=11/15	major_frequency=5.909e-01	minor_base=C	minor_cov=11/7	new_cov=11/15	polymorphism_frequency=5.909e-01	polymorphism_score=64.0	prediction=polymorphism	ref_cov=11/7	total_cov=23/23
RA	480	.	NC_000913	1634676	0	A	G	bias_e_value=2301870	bias_p_value=0.495917	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.4	fisher_strand_p_value=0.230733	frequency=5.778e-01	ks_quality_p_value=0.798579	major_base=G	major_cov=11/15	major_frequency=5.778e-01	minor_base=A	minor_cov=12/7	new_cov=11/15	polymorphism_frequency=5.778e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=12/7	total_cov=23/22
RA	481	.	NC_000913	1634699	0	A	C	bias_e_value=937674	bias_p_value=0.202013	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.7	fisher_strand_p_value=0.515838	frequency=5.897e-01	ks_quality_p_value=0.0983739	major_base=C	major_cov=11/12	major_frequency=5.897e-01	minor_base=A	minor_cov=10/6	new_cov=11/12	polymorphism_frequency=5.897e-01	polymorphism_score=45.0	prediction=polymorphism	ref_cov=10/6	total_cov=21/18
RA	482	.	NC_000913	1634724	0	G	A	bias_e_value=3914260	bias_p_value=0.843291	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.1	fisher_strand_p_value=0.495297	frequency=5.588e-01	ks_quality_p_value=1	major_base=A	major_cov=10/9	major_frequency=5.588e-01	minor_base=G	minor_cov=10/5	new_cov=10/9	polymorphism_frequency=5.588e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=10/5	total_cov=20/14
RA	483	.	NC_000913	1634769	0	T	A	bias_e_value=3565490	bias_p_value=0.768152	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.7	fisher_strand_p_value=0.401789	frequency=6.000e-01	ks_quality_p_value=1	major_base=A	major_cov=9/6	major_frequency=6.000e-01	minor_base=T	minor_cov=8/2	new_cov=9/6	polymorphism_frequency=6.000e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=8/2	total_cov=17/8
RA	484	.	NC_000913	1634778	0	T	G	bias_e_value=3201940	bias_p_value=0.689828	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.4	fisher_strand_p_value=0.401789	frequency=6.000e-01	ks_quality_p_value=0.807887	major_base=G	major_cov=9/6	major_frequency=6.000e-01	minor_base=T	minor_cov=8/2	new_cov=9/6	polymorphism_frequency=6.000e-01	polymorphism_score=23.1	prediction=polymorphism	ref_cov=8/2	total_cov=17/8
RA	485	.	NC_000913	1634799	0	A	G	bias_e_value=2881120	bias_p_value=0.62071	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=0.669269	frequency=5.652e-01	ks_quality_p_value=0.400229	major_base=G	major_cov=7/6	major_frequency=5.652e-01	minor_base=A	minor_cov=7/3	new_cov=7/6	polymorphism_frequency=5.652e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=7/3	total_cov=15/9
RA	486	.	NC_000913	1635974	0	T	G	bias_e_value=4244900	bias_p_value=0.914524	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.4	fisher_strand_p_value=0.746988	frequency=3.256e-01	ks_quality_p_value=0.824831	major_base=T	major_cov=14/15	major_frequency=6.744e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.256e-01	polymorphism_score=29.5	prediction=polymorphism	ref_cov=14/15	total_cov=22/21
RA	487	.	NC_000913	1636068	0	T	C	bias_e_value=2478700	bias_p_value=0.534012	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.5	fisher_strand_p_value=0.346503	frequency=3.571e-01	ks_quality_p_value=0.599194	major_base=T	major_cov=10/17	major_frequency=6.429e-01	minor_base=C	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=3.571e-01	polymorphism_score=40.9	prediction=polymorphism	ref_cov=10/17	total_cov=18/24
RA	488	.	NC_000913	1636074	0	C	T	bias_e_value=2322770	bias_p_value=0.500419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.5	fisher_strand_p_value=0.514852	frequency=3.659e-01	ks_quality_p_value=0.36308	major_base=C	major_cov=10/16	major_frequency=6.341e-01	minor_base=T	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=3.659e-01	polymorphism_score=39.1	prediction=polymorphism	ref_cov=10/16	total_cov=18/23
RA	489	.	NC_000913	1636128	0	C	T	bias_e_value=3424820	bias_p_value=0.737846	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.3	fisher_strand_p_value=0.4485	frequency=2.632e-01	ks_quality_p_value=0.82491	major_base=C	major_cov=9/19	major_frequency=7.368e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.632e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=9/19	total_cov=14/24
RA	490	.	NC_000913	1636145	0	T	C	bias_e_value=2296470	bias_p_value=0.494752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=0.689282	frequency=2.368e-01	ks_quality_p_value=0.266322	major_base=T	major_cov=9/20	major_frequency=7.632e-01	minor_base=C	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.368e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=9/20	total_cov=13/25
RA	491	.	NC_000913	1636382	0	C	A	bias_e_value=2514260	bias_p_value=0.541673	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.5	fisher_strand_p_value=0.67603	frequency=2.000e-01	ks_quality_p_value=0.314383	major_base=C	major_cov=12/16	major_frequency=8.000e-01	minor_base=A	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.000e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=12/16	total_cov=14/21
RA	492	.	NC_000913	1636413	0	C	A	bias_e_value=521346	bias_p_value=0.112319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.9	fisher_strand_p_value=0.44628	frequency=2.432e-01	ks_quality_p_value=0.053062	major_base=C	major_cov=11/17	major_frequency=7.568e-01	minor_base=A	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.432e-01	polymorphism_score=25.1	prediction=polymorphism	ref_cov=11/17	total_cov=13/24
RA	493	.	NC_000913	1636423	0	T	C	bias_e_value=3486150	bias_p_value=0.751058	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.8	fisher_strand_p_value=0.479927	frequency=2.927e-01	ks_quality_p_value=0.799093	major_base=T	major_cov=12/17	major_frequency=7.073e-01	minor_base=C	minor_cov=3/9	new_cov=3/9	polymorphism_frequency=2.927e-01	polymorphism_score=29.5	prediction=polymorphism	ref_cov=12/17	total_cov=15/26
RA	494	.	NC_000913	1636455	0	G	A	bias_e_value=4086490	bias_p_value=0.880396	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.4	fisher_strand_p_value=0.75661	frequency=3.778e-01	ks_quality_p_value=0.730447	major_base=G	major_cov=12/16	major_frequency=6.222e-01	minor_base=A	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=3.778e-01	polymorphism_score=39.9	prediction=polymorphism	ref_cov=12/16	total_cov=18/28
RA	495	.	NC_000913	1636484	0	C	T	bias_e_value=4213870	bias_p_value=0.907838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.0	fisher_strand_p_value=0.765152	frequency=4.375e-01	ks_quality_p_value=0.787607	major_base=C	major_cov=11/16	major_frequency=5.625e-01	minor_base=T	minor_cov=7/14	new_cov=7/14	polymorphism_frequency=4.375e-01	polymorphism_score=61.1	prediction=polymorphism	ref_cov=11/16	total_cov=18/30
RA	496	.	NC_000913	1636503	0	T	C	bias_e_value=4363940	bias_p_value=0.94017	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.1	fisher_strand_p_value=0.770655	frequency=4.490e-01	ks_quality_p_value=0.875438	major_base=T	major_cov=12/15	major_frequency=5.510e-01	minor_base=C	minor_cov=8/14	new_cov=8/14	polymorphism_frequency=4.490e-01	polymorphism_score=64.7	prediction=polymorphism	ref_cov=12/15	total_cov=20/29
RA	497	.	NC_000913	1652331	0	T	C	consensus_score=104.5	frequency=1	major_base=C	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	498	.	NC_000913	1667887	0	C	.	consensus_score=120.8	frequency=1	major_base=.	major_cov=11/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	499	.	NC_000913	1673859	0	G	A	consensus_score=68.3	frequency=1	major_base=A	major_cov=16/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/4
RA	500	.	NC_000913	1744751	0	C	.	bias_e_value=4641650	bias_p_value=1	consensus_score=99.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=11/12	major_frequency=9.583e-01	minor_base=C	minor_cov=1/0	new_cov=11/12	polymorphism_frequency=9.583e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=12/12
RA	501	.	NC_000913	1799985	0	C	T	consensus_score=81.8	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	502	.	NC_000913	1823167	0	A	G	consensus_score=90.0	frequency=1	major_base=G	major_cov=6/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/22
RA	503	.	NC_000913	1872113	0	A	G	consensus_score=47.3	frequency=1	major_base=G	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	504	.	NC_000913	1978243	0	G	T	consensus_score=100.1	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	505	.	NC_000913	2003264	0	C	T	consensus_score=54.5	frequency=1	major_base=T	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	506	.	NC_000913	2004762	0	C	T	consensus_score=181.6	frequency=1	major_base=T	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	507	.	NC_000913	2032423	0	G	A	consensus_score=99.4	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	508	.	NC_000913	2064756	0	A	G	consensus_score=148.2	frequency=1	major_base=G	major_cov=26/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/16
RA	509	.	NC_000913	2090086	0	C	T	consensus_score=68.1	frequency=1	major_base=T	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	510	.	NC_000913	2101553	0	G	A	consensus_score=110.3	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	511	.	NC_000913	2109428	0	G	A	consensus_score=100.0	frequency=1	major_base=A	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	512	.	NC_000913	2139881	0	C	T	bias_e_value=3762590	bias_p_value=0.810613	consensus_score=103.6	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/13	major_frequency=9.677e-01	minor_base=G	minor_cov=0/1	new_cov=17/13	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	513	.	NC_000913	2152105	0	C	T	consensus_score=120.8	frequency=1	major_base=T	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	514	.	NC_000913	2166838	0	C	T	consensus_score=94.5	frequency=1	major_base=T	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	515	.	NC_000913	2169206	0	C	T	consensus_score=102.2	frequency=1	major_base=T	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	516	.	NC_000913	2173363	0	C	.	bias_e_value=3849240	bias_p_value=0.829283	consensus_score=121.2	fisher_strand_p_value=0.485057	frequency=1	ks_quality_p_value=0.981133	major_base=.	major_cov=14/14	major_frequency=9.333e-01	minor_base=C	minor_cov=0/2	new_cov=14/14	polymorphism_frequency=9.333e-01	polymorphism_score=0.0	prediction=consensus	ref_cov=0/2	total_cov=14/16
RA	517	.	NC_000913	2173364	0	C	.	bias_e_value=4641650	bias_p_value=1	consensus_score=119.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=14/14	major_frequency=9.655e-01	minor_base=A	minor_cov=0/1	new_cov=14/14	polymorphism_frequency=9.655e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=0/1	total_cov=14/16
RA	518	.	NC_000913	2183528	0	T	C	bias_e_value=4641570	bias_p_value=0.999982	consensus_score=133.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994012	major_base=C	major_cov=19/17	major_frequency=9.730e-01	minor_base=A	minor_cov=1/0	new_cov=19/17	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	519	.	NC_000913	2242121	0	A	G	consensus_score=94.2	frequency=1	major_base=G	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	520	.	NC_000913	2271800	0	G	A	consensus_score=132.9	frequency=1	major_base=A	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	521	.	NC_000913	2274010	0	G	A	consensus_score=112.0	frequency=1	major_base=A	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	522	.	NC_000913	2276671	0	G	A	consensus_score=117.5	frequency=1	major_base=A	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	523	.	NC_000913	2279263	0	G	A	consensus_score=125.9	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	524	.	NC_000913	2291052	0	G	A	consensus_score=98.8	frequency=1	major_base=A	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	525	.	NC_000913	2294865	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=195.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/26	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=29/26	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	526	.	NC_000913	2296419	0	G	A	bias_e_value=3461150	bias_p_value=0.745671	consensus_score=140.5	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=0.965815	major_base=A	major_cov=28/17	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=28/17	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/18
RA	527	.	NC_000913	2296874	0	G	A	consensus_score=171.3	frequency=1	major_base=A	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	528	.	NC_000913	2297434	0	G	A	consensus_score=156.3	frequency=1	major_base=A	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	529	.	NC_000913	2299927	0	G	A	consensus_score=176.9	frequency=1	major_base=A	major_cov=21/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/33
RA	530	.	NC_000913	2303995	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=101.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/14	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=15/14	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	531	.	NC_000913	2319156	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=106.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=A	major_cov=17/14	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=17/14	polymorphism_frequency=9.688e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=18/14
RA	532	.	NC_000913	2323041	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=134.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/22	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=15/22	polymorphism_frequency=9.737e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	533	.	NC_000913	2323243	0	G	A	consensus_score=102.2	frequency=1	major_base=A	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	534	.	NC_000913	2340384	0	C	T	consensus_score=120.4	frequency=1	major_base=T	major_cov=13/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/22
RA	535	.	NC_000913	2341475	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=159.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999034	major_base=T	major_cov=28/17	major_frequency=9.783e-01	minor_base=C	minor_cov=1/0	new_cov=28/17	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=29/17
RA	536	.	NC_000913	2355288	0	G	A	bias_e_value=3921700	bias_p_value=0.844893	consensus_score=129.2	fisher_strand_p_value=0.497585	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/20	major_frequency=9.565e-01	minor_base=G	minor_cov=2/0	new_cov=24/20	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=26/20
RA	537	.	NC_000913	2365176	0	G	A	consensus_score=100.4	frequency=1	major_base=A	major_cov=20/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/10
RA	538	.	NC_000913	2371341	0	G	A	bias_e_value=4640360	bias_p_value=0.999721	consensus_score=81.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.976472	major_base=A	major_cov=16/11	major_frequency=9.643e-01	minor_base=C	minor_cov=1/0	new_cov=16/11	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/11
RA	539	.	NC_000913	2373621	0	G	A	consensus_score=109.6	frequency=1	major_base=A	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	540	.	NC_000913	2384531	0	C	T	consensus_score=56.3	frequency=1	major_base=T	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	541	.	NC_000913	2390408	0	G	A	consensus_score=176.1	frequency=1	major_base=A	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	542	.	NC_000913	2397444	0	G	A	consensus_score=141.7	frequency=1	major_base=A	major_cov=29/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/13
RA	543	.	NC_000913	2421391	0	G	A	consensus_score=35.7	frequency=1	major_base=A	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	544	.	NC_000913	2427382	0	C	T	consensus_score=122.9	frequency=1	major_base=T	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	545	.	NC_000913	2427516	0	C	T	bias_e_value=3827840	bias_p_value=0.824672	consensus_score=111.4	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.998219	major_base=T	major_cov=18/15	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=18/15	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	546	.	NC_000913	2443906	0	C	T	bias_e_value=3635050	bias_p_value=0.783137	consensus_score=134.4	fisher_strand_p_value=0.418605	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/25	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=17/25	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/25
RA	547	.	NC_000913	2446459	0	C	T	bias_e_value=2672940	bias_p_value=0.575859	consensus_score=150.3	fisher_strand_p_value=0.235372	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/22	major_frequency=9.375e-01	minor_base=G	minor_cov=0/3	new_cov=23/22	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	548	.	NC_000913	2452924	0	C	T	consensus_score=152.4	frequency=1	major_base=T	major_cov=31/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/15
RA	549	.	NC_000913	2454572	0	C	T	consensus_score=83.6	frequency=1	major_base=T	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	550	.	NC_000913	2457433	0	C	T	consensus_score=95.4	frequency=1	major_base=T	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	551	.	NC_000913	3006012	0	C	T	bias_e_value=11316.6	bias_p_value=0.00243806	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.5	fisher_strand_p_value=0.004662	frequency=5.385e-01	ks_quality_p_value=0.0565973	major_base=T	major_cov=7/0	major_frequency=5.385e-01	minor_base=C	minor_cov=1/5	new_cov=7/0	polymorphism_frequency=5.385e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=1/5	total_cov=8/5
RA	552	.	NC_000913	3102282	0	C	T	consensus_score=108.6	frequency=1	major_base=T	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	553	.	NC_000913	3177748	0	C	A	bias_e_value=15054.3	bias_p_value=0.00324331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=0.000363624	frequency=3.243e-01	ks_quality_p_value=1	major_base=C	major_cov=18/7	major_frequency=6.757e-01	minor_base=A	minor_cov=1/11	new_cov=1/11	polymorphism_frequency=3.243e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=18/7	total_cov=19/18
RA	554	.	NC_000913	3215073	0	T	C	consensus_score=166.1	frequency=1	major_base=C	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	555	.	NC_000913	3268970	0	A	G	bias_e_value=4641570	bias_p_value=0.999983	consensus_score=63.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994169	major_base=G	major_cov=6/12	major_frequency=9.474e-01	minor_base=T	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	556	.	NC_000913	3339943	0	C	G	consensus_score=124.7	frequency=1	major_base=G	major_cov=14/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/20
RA	557	.	NC_000913	3401452	0	G	A	bias_e_value=37.5138	bias_p_value=8.08198e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.7	fisher_strand_p_value=5.22618e-07	frequency=2.955e-01	ks_quality_p_value=1	major_base=G	major_cov=25/6	major_frequency=7.045e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.955e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=25/6	total_cov=25/20
RA	558	.	NC_000913	3446743	0	G	A	consensus_score=118.3	frequency=1	major_base=A	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	559	.	NC_000913	3486205	0	C	A	consensus_score=131.9	frequency=1	major_base=A	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	560	.	NC_000913	3502726	0	G	A	consensus_score=144.4	frequency=1	major_base=A	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	561	.	NC_000913	3505081	0	C	T	bias_e_value=3344.72	bias_p_value=0.000720588	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.8	fisher_strand_p_value=6.80062e-05	frequency=3.514e-01	ks_quality_p_value=1	major_base=C	major_cov=8/16	major_frequency=6.486e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=3.514e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=8/16	total_cov=23/16
RA	562	.	NC_000913	3549730	0	G	A	consensus_score=115.3	frequency=1	major_base=A	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	563	.	NC_000913	3560455	1	.	G	consensus_score=155.0	frequency=1	major_base=G	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	564	.	NC_000913	3561880	0	G	A	consensus_score=131.9	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	565	.	NC_000913	3567058	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=118.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/22	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=12/22	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/23
RA	566	.	NC_000913	3731713	0	G	A	bias_e_value=20.706	bias_p_value=4.46092e-06	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.9	fisher_strand_p_value=0.000119076	frequency=5.263e-01	ks_quality_p_value=0.00232704	major_base=A	major_cov=0/10	major_frequency=5.263e-01	minor_base=G	minor_cov=8/1	new_cov=0/10	polymorphism_frequency=5.263e-01	polymorphism_score=24.0	prediction=polymorphism	ref_cov=8/1	total_cov=8/11
RA	567	.	NC_000913	4115770	0	C	T	consensus_score=155.4	frequency=1	major_base=T	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	568	.	NC_000913	4146389	1	.	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=172.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997552	major_base=T	major_cov=22/26	major_frequency=9.412e-01	minor_base=.	minor_cov=1/2	new_cov=22/26	polymorphism_frequency=9.412e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=1/2	total_cov=23/28
RA	569	.	NC_000913	4217823	0	G	A	consensus_score=162.6	frequency=1	major_base=A	major_cov=22/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/24
RA	570	.	NC_000913	4223419	0	C	T	consensus_score=105.5	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	571	.	NC_000913	4237233	0	C	A	bias_e_value=272.295	bias_p_value=5.86634e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.3	fisher_strand_p_value=4.39953e-06	frequency=3.171e-01	ks_quality_p_value=1	major_base=C	major_cov=21/7	major_frequency=6.829e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=3.171e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=21/7	total_cov=21/20
RA	572	.	NC_000913	4264103	0	G	A	consensus_score=107.7	frequency=1	major_base=A	major_cov=10/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/23
RA	573	.	NC_000913	4296380	1	.	C	consensus_score=74.5	frequency=1	major_base=C	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	574	.	NC_000913	4296380	2	.	G	consensus_score=73.0	frequency=1	major_base=G	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	575	.	NC_000913	4538491	0	C	T	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=111.4	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/15	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=18/15	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	576	.	NC_000913	4542682	0	T	.	bias_e_value=3970890	bias_p_value=0.855492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.3	fisher_strand_p_value=0.669921	frequency=4.000e-01	ks_quality_p_value=0.765928	major_base=T	major_cov=6/6	major_frequency=6.000e-01	minor_base=.	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=4.000e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=6/6	total_cov=9/12
RA	577	.	NC_000913	4542683	0	T	.	bias_e_value=3207650	bias_p_value=0.691057	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.1	fisher_strand_p_value=1	frequency=6.190e-01	ks_quality_p_value=0.325695	major_base=.	major_cov=6/7	major_frequency=6.190e-01	minor_base=T	minor_cov=3/5	new_cov=6/7	polymorphism_frequency=6.190e-01	polymorphism_score=36.9	prediction=polymorphism	ref_cov=3/5	total_cov=9/12
RA	578	.	NC_000913	4543024	0	C	G	consensus_score=42.7	frequency=1	major_base=G	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	579	.	NC_000913	4559104	0	G	A	bias_e_value=4641230	bias_p_value=0.999908	consensus_score=156.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986487	major_base=A	major_cov=25/23	major_frequency=9.796e-01	minor_base=T	minor_cov=1/0	new_cov=25/23	polymorphism_frequency=9.796e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=0/0	total_cov=26/23
MC	580	.	NC_000913	257908	258683	765	0	left_inside_cov=0	left_outside_cov=42	right_inside_cov=2	right_outside_cov=43
MC	581	.	NC_000913	1196313	1211492	0	0	left_inside_cov=7	left_outside_cov=8	right_inside_cov=7	right_outside_cov=8
MC	582	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=25	right_inside_cov=1	right_outside_cov=26
MC	583	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=26	right_inside_cov=0	right_outside_cov=26
MC	584	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=25	right_inside_cov=0	right_outside_cov=34
MC	585	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=33	right_inside_cov=0	right_outside_cov=32
MC	586	.	NC_000913	3423866	3424449	366	211	left_inside_cov=7	left_outside_cov=8	right_inside_cov=7	right_outside_cov=9
MC	587	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=0	right_outside_cov=32
JC	588	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=246	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=241	max_left_minus=230	max_left_plus=241	max_min_left=118	max_min_left_minus=118	max_min_left_plus=62	max_min_right=121	max_min_right_minus=116	max_min_right_plus=121	max_pos_hash_score=492	max_right=242	max_right_minus=242	max_right_plus=193	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.73	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=246	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=246	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26
JC	589	.	NC_000913	15911	-1	NC_000913	15922	1	-9	alignment_overlap=-9	coverage_minus=0	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=237	key=NC_000913__15911__-1__NC_000913__15922__1__-9__TGTTTTCAA__251__251__1__1	max_left=198	max_left_minus=0	max_left_plus=198	max_min_left=91	max_min_left_minus=0	max_min_left_plus=91	max_min_right=42	max_min_right_minus=0	max_min_right_plus=42	max_pos_hash_score=474	max_right=218	max_right_minus=0	max_right_plus=218	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.17	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6	unique_read_sequence=TGTTTTCAA
JC	590	.	NC_000913	15912	-1	NC_000913	15922	1	-8	alignment_overlap=-8	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=238	key=NC_000913__15912__-1__NC_000913__15922__1__-8__TTTTTCAA__251__251__1__1	max_left=199	max_left_minus=0	max_left_plus=199	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=42	max_min_right_minus=0	max_min_right_plus=42	max_pos_hash_score=476	max_right=186	max_right_minus=0	max_right_plus=186	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3	unique_read_sequence=TTTTTCAA
JC	591	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1	max_left=246	max_left_minus=246	max_left_plus=239	max_min_left=108	max_min_left_minus=108	max_min_left_plus=83	max_min_right=119	max_min_right_minus=116	max_min_right_plus=119	max_pos_hash_score=492	max_right=246	max_right_minus=246	max_right_plus=220	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.36	new_junction_read_count=50	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=50
JC	592	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1	max_left=243	max_left_minus=243	max_left_plus=223	max_min_left=121	max_min_left_minus=121	max_min_left_plus=118	max_min_right=121	max_min_right_minus=121	max_min_right_plus=113	max_pos_hash_score=492	max_right=249	max_right_minus=239	max_right_plus=249	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.33	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=49
JC	593	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=30	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=237	max_min_left=116	max_min_left_minus=116	max_min_left_plus=115	max_min_right=121	max_min_right_minus=121	max_min_right_plus=101	max_pos_hash_score=476	max_right=225	max_right_minus=225	max_right_plus=211	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=246	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	594	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0	max_left=242	max_left_minus=168	max_left_plus=242	max_min_left=124	max_min_left_minus=114	max_min_left_plus=124	max_min_right=123	max_min_right_minus=117	max_min_right_plus=123	max_pos_hash_score=492	max_right=248	max_right_minus=247	max_right_plus=248	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	595	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0	max_left=246	max_left_minus=154	max_left_plus=246	max_min_left=113	max_min_left_minus=97	max_min_left_plus=113	max_min_right=119	max_min_right_minus=102	max_min_right_plus=119	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=226	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	596	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=246	key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1	max_left=237	max_left_minus=226	max_left_plus=237	max_min_left=105	max_min_left_minus=95	max_min_left_plus=105	max_min_right=123	max_min_right_minus=122	max_min_right_plus=123	max_pos_hash_score=492	max_right=246	max_right_minus=246	max_right_plus=244	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=33	polymorphism_frequency=NA	pos_hash_score=31	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=32
JC	597	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0	max_left=243	max_left_minus=243	max_left_plus=240	max_min_left=112	max_min_left_minus=109	max_min_left_plus=112	max_min_right=121	max_min_right_minus=15	max_min_right_plus=121	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	598	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=16	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=244	key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1	max_left=247	max_left_minus=239	max_left_plus=247	max_min_left=121	max_min_left_minus=114	max_min_left_plus=121	max_min_right=96	max_min_right_minus=96	max_min_right_plus=78	max_pos_hash_score=488	max_right=237	max_right_minus=237	max_right_plus=227	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.74	new_junction_read_count=27	polymorphism_frequency=NA	pos_hash_score=24	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	599	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=2.865e-01	junction_possible_overlap_registers=244	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=236	max_left_minus=220	max_left_plus=236	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=103	max_min_right_minus=103	max_min_right_plus=94	max_pos_hash_score=488	max_right=103	max_right_minus=103	max_right_plus=94	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.41	new_junction_read_count=15	polymorphism_frequency=2.865e-01	pos_hash_score=12	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=2	side_1_possible_overlap_registers=246	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=12
JC	600	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1	max_left=250	max_left_minus=250	max_left_plus=226	max_min_left=119	max_min_left_minus=53	max_min_left_plus=119	max_min_right=125	max_min_right_minus=81	max_min_right_plus=125	max_pos_hash_score=492	max_right=245	max_right_minus=245	max_right_plus=214	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.68	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	601	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1	max_left=246	max_left_minus=232	max_left_plus=246	max_min_left=123	max_min_left_minus=123	max_min_left_plus=91	max_min_right=124	max_min_right_minus=124	max_min_right_plus=123	max_pos_hash_score=490	max_right=237	max_right_minus=237	max_right_plus=225	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.90	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	602	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=246	max_left_minus=246	max_left_plus=233	max_min_left=118	max_min_left_minus=82	max_min_left_plus=118	max_min_right=118	max_min_right_minus=118	max_min_right_plus=118	max_pos_hash_score=492	max_right=246	max_right_minus=246	max_right_plus=240	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.79	new_junction_read_count=29	polymorphism_frequency=9.660e-01	pos_hash_score=25	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	603	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=11	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0	max_left=220	max_left_minus=191	max_left_plus=220	max_min_left=101	max_min_left_minus=98	max_min_left_plus=101	max_min_right=117	max_min_right_minus=107	max_min_right_plus=117	max_pos_hash_score=472	max_right=231	max_right_minus=194	max_right_plus=231	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.71	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=246	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	604	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=14	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=162	max_min_left=107	max_min_left_minus=107	max_min_left_plus=106	max_min_right=113	max_min_right_minus=113	max_min_right_plus=111	max_pos_hash_score=484	max_right=241	max_right_minus=241	max_right_plus=241	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.72	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=246	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	605	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0	max_left=243	max_left_minus=229	max_left_plus=243	max_min_left=122	max_min_left_minus=110	max_min_left_plus=122	max_min_right=104	max_min_right_minus=104	max_min_right_plus=94	max_pos_hash_score=490	max_right=230	max_right_minus=226	max_right_plus=230	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.63	new_junction_read_count=23	polymorphism_frequency=9.584e-01	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=1	side_1_possible_overlap_registers=246	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=245	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=22
JC	606	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=240	max_left_minus=240	max_left_plus=237	max_min_left=117	max_min_left_minus=117	max_min_left_plus=116	max_min_right=121	max_min_right_minus=121	max_min_right_plus=116	max_pos_hash_score=492	max_right=227	max_right_minus=227	max_right_plus=219	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.68	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=246	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	607	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=20	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0	max_left=236	max_left_minus=235	max_left_plus=236	max_min_left=117	max_min_left_minus=117	max_min_left_plus=96	max_min_right=92	max_min_right_minus=73	max_min_right_plus=92	max_pos_hash_score=488	max_right=246	max_right_minus=233	max_right_plus=246	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	608	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0	max_left=248	max_left_minus=248	max_left_plus=236	max_min_left=122	max_min_left_minus=106	max_min_left_plus=122	max_min_right=123	max_min_right_minus=123	max_min_right_plus=122	max_pos_hash_score=492	max_right=236	max_right_minus=236	max_right_plus=232	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.92	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	609	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=24	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0	max_left=246	max_left_minus=246	max_left_plus=211	max_min_left=123	max_min_left_minus=116	max_min_left_plus=123	max_min_right=113	max_min_right_minus=112	max_min_right_plus=113	max_pos_hash_score=490	max_right=244	max_right_minus=244	max_right_plus=242	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	610	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0	max_left=235	max_left_minus=234	max_left_plus=235	max_min_left=120	max_min_left_minus=120	max_min_left_plus=113	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=492	max_right=248	max_right_minus=248	max_right_plus=244	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.73	new_junction_read_count=27	polymorphism_frequency=9.631e-01	pos_hash_score=26	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=27
JC	611	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=232	max_left_minus=230	max_left_plus=232	max_min_left=111	max_min_left_minus=66	max_min_left_plus=111	max_min_right=124	max_min_right_minus=124	max_min_right_plus=124	max_pos_hash_score=492	max_right=243	max_right_minus=243	max_right_plus=163	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=246	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=34
JC	612	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0	max_left=246	max_left_minus=234	max_left_plus=246	max_min_left=118	max_min_left_minus=113	max_min_left_plus=118	max_min_right=122	max_min_right_minus=122	max_min_right_plus=117	max_pos_hash_score=492	max_right=250	max_right_minus=250	max_right_plus=250	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39
JC	613	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1	max_left=242	max_left_minus=242	max_left_plus=240	max_min_left=109	max_min_left_minus=50	max_min_left_plus=109	max_min_right=124	max_min_right_minus=96	max_min_right_plus=124	max_pos_hash_score=490	max_right=247	max_right_minus=247	max_right_plus=246	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35
JC	614	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=227	max_left_minus=227	max_left_plus=214	max_min_left=114	max_min_left_minus=114	max_min_left_plus=112	max_min_right=122	max_min_right_minus=115	max_min_right_plus=122	max_pos_hash_score=492	max_right=247	max_right_minus=247	max_right_plus=214	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.73	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	615	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0	max_left=231	max_left_minus=202	max_left_plus=231	max_min_left=124	max_min_left_minus=120	max_min_left_plus=124	max_min_right=105	max_min_right_minus=99	max_min_right_plus=105	max_pos_hash_score=490	max_right=244	max_right_minus=244	max_right_plus=239	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	616	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0	max_left=240	max_left_minus=202	max_left_plus=240	max_min_left=120	max_min_left_minus=120	max_min_left_plus=0	max_min_right=112	max_min_right_minus=112	max_min_right_plus=37	max_pos_hash_score=492	max_right=250	max_right_minus=250	max_right_plus=37	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.49	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18
JC	617	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1	max_left=248	max_left_minus=248	max_left_plus=226	max_min_left=92	max_min_left_minus=92	max_min_left_plus=69	max_min_right=117	max_min_right_minus=117	max_min_right_plus=93	max_pos_hash_score=492	max_right=234	max_right_minus=234	max_right_plus=182	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.57	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	618	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=24	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=165	max_min_left=116	max_min_left_minus=116	max_min_left_plus=102	max_min_right=118	max_min_right_minus=118	max_min_right_plus=99	max_pos_hash_score=476	max_right=239	max_right_minus=239	max_right_plus=226	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=246	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	619	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0	max_left=240	max_left_minus=220	max_left_plus=240	max_min_left=105	max_min_left_minus=105	max_min_left_plus=93	max_min_right=123	max_min_right_minus=89	max_min_right_plus=123	max_pos_hash_score=490	max_right=249	max_right_minus=249	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	620	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=19	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0	max_left=247	max_left_minus=246	max_left_plus=247	max_min_left=114	max_min_left_minus=114	max_min_left_plus=107	max_min_right=122	max_min_right_minus=76	max_min_right_plus=122	max_pos_hash_score=488	max_right=236	max_right_minus=236	max_right_plus=201	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.88	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=246	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	621	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1	max_left=249	max_left_minus=236	max_left_plus=249	max_min_left=124	max_min_left_minus=124	max_min_left_plus=124	max_min_right=125	max_min_right_minus=51	max_min_right_plus=125	max_pos_hash_score=492	max_right=242	max_right_minus=242	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=33
JC	622	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1	max_left=231	max_left_minus=231	max_left_plus=203	max_min_left=114	max_min_left_minus=114	max_min_left_plus=110	max_min_right=125	max_min_right_minus=108	max_min_right_plus=125	max_pos_hash_score=490	max_right=229	max_right_minus=229	max_right_plus=214	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.82	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	623	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=25	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=236	max_min_left=110	max_min_left_minus=110	max_min_left_plus=109	max_min_right=123	max_min_right_minus=112	max_min_right_plus=123	max_pos_hash_score=490	max_right=235	max_right_minus=231	max_right_plus=235	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.39	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=50
JC	624	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1	max_left=241	max_left_minus=241	max_left_plus=241	max_min_left=124	max_min_left_minus=124	max_min_left_plus=120	max_min_right=113	max_min_right_minus=113	max_min_right_plus=112	max_pos_hash_score=492	max_right=238	max_right_minus=203	max_right_plus=238	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.01	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35
JC	625	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=246	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=246	max_left_minus=238	max_left_plus=246	max_min_left=122	max_min_left_minus=88	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=116	max_pos_hash_score=492	max_right=248	max_right_minus=248	max_right_plus=210	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.82	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	626	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.857e-01	junction_possible_overlap_registers=237	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____251__251__0__0	max_left=154	max_left_minus=154	max_left_plus=131	max_min_left=78	max_min_left_minus=42	max_min_left_plus=78	max_min_right=112	max_min_right_minus=89	max_min_right_plus=112	max_pos_hash_score=474	max_right=224	max_right_minus=224	max_right_plus=219	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.23	new_junction_read_count=8	polymorphism_frequency=3.857e-01	pos_hash_score=8	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.38	side_1_overlap=9	side_1_possible_overlap_registers=246	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=8
UN	627	.	NC_000913	15609	16514
UN	628	.	NC_000913	16523	16523
UN	629	.	NC_000913	16525	16525
UN	630	.	NC_000913	20004	20006
UN	631	.	NC_000913	20008	20008
UN	632	.	NC_000913	20010	20010
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UN	634	.	NC_000913	20017	20336
UN	635	.	NC_000913	20340	20340
UN	636	.	NC_000913	223955	223956
UN	637	.	NC_000913	223958	224554
UN	638	.	NC_000913	224556	224557
UN	639	.	NC_000913	224564	224564
UN	640	.	NC_000913	224568	224568
UN	641	.	NC_000913	224574	224574
UN	642	.	NC_000913	225114	225403
UN	643	.	NC_000913	225405	225405
UN	644	.	NC_000913	225407	225407
UN	645	.	NC_000913	225416	225416
UN	646	.	NC_000913	227202	228438
UN	647	.	NC_000913	228441	228441
UN	648	.	NC_000913	228443	228443
UN	649	.	NC_000913	228445	228449
UN	650	.	NC_000913	228457	228457
UN	651	.	NC_000913	257908	258683
UN	652	.	NC_000913	270748	271072
UN	653	.	NC_000913	274172	274174
UN	654	.	NC_000913	274180	274927
UN	655	.	NC_000913	274929	274931
UN	656	.	NC_000913	274934	274935
UN	657	.	NC_000913	274940	274940
UN	658	.	NC_000913	274942	274942
UN	659	.	NC_000913	279368	279733
UN	660	.	NC_000913	290856	291193
UN	661	.	NC_000913	315412	316277
UN	662	.	NC_000913	316284	316284
UN	663	.	NC_000913	316286	316286
UN	664	.	NC_000913	357890	357890
UN	665	.	NC_000913	381489	382377
UN	666	.	NC_000913	391899	391899
UN	667	.	NC_000913	391913	392766
UN	668	.	NC_000913	392770	392770
UN	669	.	NC_000913	526101	526512
UN	670	.	NC_000913	526514	526516
UN	671	.	NC_000913	526518	526522
UN	672	.	NC_000913	566987	566987
UN	673	.	NC_000913	566995	567832
UN	674	.	NC_000913	574776	574782
UN	675	.	NC_000913	574785	575575
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UN	677	.	NC_000913	578571	578571
UN	678	.	NC_000913	578574	578574
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UN	680	.	NC_000913	579127	579127
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UN	683	.	NC_000913	579502	579502
UN	684	.	NC_000913	579651	579651
UN	685	.	NC_000913	579717	579717
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UN	687	.	NC_000913	580020	580020
UN	688	.	NC_000913	580115	580115
UN	689	.	NC_000913	580120	580120
UN	690	.	NC_000913	580302	580302
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UN	693	.	NC_000913	686040	686040
UN	694	.	NC_000913	686046	686046
UN	695	.	NC_000913	686049	686049
UN	696	.	NC_000913	686054	686057
UN	697	.	NC_000913	686059	686060
UN	698	.	NC_000913	686062	686070
UN	699	.	NC_000913	686073	686078
UN	700	.	NC_000913	686080	686082
UN	701	.	NC_000913	686089	686089
UN	702	.	NC_000913	688066	688066
UN	703	.	NC_000913	688068	688843
UN	704	.	NC_000913	807343	807343
UN	705	.	NC_000913	1094458	1094458
UN	706	.	NC_000913	1094460	1095293
UN	707	.	NC_000913	1196310	1211473
UN	708	.	NC_000913	1211475	1211475
UN	709	.	NC_000913	1211477	1211477
UN	710	.	NC_000913	1211480	1211480
UN	711	.	NC_000913	1294035	1294175
UN	712	.	NC_000913	1299499	1300697
UN	713	.	NC_000913	1303073	1303084
UN	714	.	NC_000913	1311257	1311257
UN	715	.	NC_000913	1311260	1311263
UN	716	.	NC_000913	1311265	1311265
UN	717	.	NC_000913	1311267	1311268
UN	718	.	NC_000913	1311272	1311272
UN	719	.	NC_000913	1311275	1311276
UN	720	.	NC_000913	1311279	1311285
UN	721	.	NC_000913	1311295	1311295
UN	722	.	NC_000913	1311297	1311297
UN	723	.	NC_000913	1311304	1311304
UN	724	.	NC_000913	1396233	1396233
UN	725	.	NC_000913	1396241	1396244
UN	726	.	NC_000913	1396246	1396246
UN	727	.	NC_000913	1396248	1397078
UN	728	.	NC_000913	1397084	1397084
UN	729	.	NC_000913	1429111	1429111
UN	730	.	NC_000913	1429128	1429128
UN	731	.	NC_000913	1429204	1429204
UN	732	.	NC_000913	1429207	1429207
UN	733	.	NC_000913	1432828	1432828
UN	734	.	NC_000913	1432836	1432836
UN	735	.	NC_000913	1432839	1432839
UN	736	.	NC_000913	1432841	1433002
UN	737	.	NC_000913	1433007	1433008
UN	738	.	NC_000913	1433847	1433847
UN	739	.	NC_000913	1433888	1433893
UN	740	.	NC_000913	1435706	1435706
UN	741	.	NC_000913	1468109	1468109
UN	742	.	NC_000913	1468112	1469039
UN	743	.	NC_000913	1469041	1469041
UN	744	.	NC_000913	1469043	1469045
UN	745	.	NC_000913	1469047	1469047
UN	746	.	NC_000913	1469051	1469057
UN	747	.	NC_000913	1469516	1469516
UN	748	.	NC_000913	1469518	1470314
UN	749	.	NC_000913	1528528	1528968
UN	750	.	NC_000913	1528974	1528974
UN	751	.	NC_000913	1528976	1528976
UN	752	.	NC_000913	1571014	1571129
UN	753	.	NC_000913	1622843	1622843
UN	754	.	NC_000913	1633382	1633385
UN	755	.	NC_000913	1633387	1633459
UN	756	.	NC_000913	1633461	1633461
UN	757	.	NC_000913	1633469	1633469
UN	758	.	NC_000913	1634202	1634202
UN	759	.	NC_000913	1634205	1634205
UN	760	.	NC_000913	1634207	1634209
UN	761	.	NC_000913	1634216	1634217
UN	762	.	NC_000913	1634220	1634439
UN	763	.	NC_000913	1634482	1634482
UN	764	.	NC_000913	1634484	1634484
UN	765	.	NC_000913	1634569	1634569
UN	766	.	NC_000913	1634571	1634571
UN	767	.	NC_000913	1634578	1634578
UN	768	.	NC_000913	1634597	1634597
UN	769	.	NC_000913	1634658	1634658
UN	770	.	NC_000913	1634661	1634661
UN	771	.	NC_000913	1634676	1634676
UN	772	.	NC_000913	1634699	1634699
UN	773	.	NC_000913	1634724	1634724
UN	774	.	NC_000913	1634769	1634769
UN	775	.	NC_000913	1634778	1634778
UN	776	.	NC_000913	1634799	1634799
UN	777	.	NC_000913	1640520	1640520
UN	778	.	NC_000913	1651061	1651346
UN	779	.	NC_000913	1739665	1739665
UN	780	.	NC_000913	1978495	1979270
UN	781	.	NC_000913	2052675	2052675
UN	782	.	NC_000913	2052682	2052682
UN	783	.	NC_000913	2052686	2052686
UN	784	.	NC_000913	2066915	2067095
UN	785	.	NC_000913	2069119	2070058
UN	786	.	NC_000913	2070060	2070062
UN	787	.	NC_000913	2070064	2070064
UN	788	.	NC_000913	2101961	2101965
UN	789	.	NC_000913	2101967	2102749
UN	790	.	NC_000913	2151575	2151575
UN	791	.	NC_000913	2151585	2151585
UN	792	.	NC_000913	2151681	2151681
UN	793	.	NC_000913	2151694	2151694
UN	794	.	NC_000913	2170380	2170380
UN	795	.	NC_000913	2170387	2170389
UN	796	.	NC_000913	2170392	2171249
UN	797	.	NC_000913	2289140	2289140
UN	798	.	NC_000913	2289144	2289899
UN	799	.	NC_000913	2289904	2289904
UN	800	.	NC_000913	2343416	2343416
UN	801	.	NC_000913	2421437	2421437
UN	802	.	NC_000913	2514487	2515413
UN	803	.	NC_000913	2515416	2515416
UN	804	.	NC_000913	2515420	2515421
UN	805	.	NC_000913	2515427	2515427
UN	806	.	NC_000913	2558699	2565488
UN	807	.	NC_000913	2726285	2729044
UN	808	.	NC_000913	2729046	2729047
UN	809	.	NC_000913	2729782	2729783
UN	810	.	NC_000913	2729785	2729787
UN	811	.	NC_000913	2729789	2730728
UN	812	.	NC_000913	2947481	2947481
UN	813	.	NC_000913	2947522	2947522
UN	814	.	NC_000913	2947526	2947530
UN	815	.	NC_000913	2947547	2947548
UN	816	.	NC_000913	2947550	2947550
UN	817	.	NC_000913	2947552	2947558
UN	818	.	NC_000913	2947560	2947561
UN	819	.	NC_000913	2947563	2947570
UN	820	.	NC_000913	2947572	2947580
UN	821	.	NC_000913	2947582	2947594
UN	822	.	NC_000913	2947596	2947596
UN	823	.	NC_000913	2947599	2947600
UN	824	.	NC_000913	2996532	2996533
UN	825	.	NC_000913	2996537	2997492
UN	826	.	NC_000913	3006012	3006012
UN	827	.	NC_000913	3105489	3105489
UN	828	.	NC_000913	3130324	3130324
UN	829	.	NC_000913	3130326	3131115
UN	830	.	NC_000913	3186297	3186297
UN	831	.	NC_000913	3186303	3187198
UN	832	.	NC_000913	3206446	3206446
UN	833	.	NC_000913	3270014	3270014
UN	834	.	NC_000913	3270025	3270026
UN	835	.	NC_000913	3270054	3270054
UN	836	.	NC_000913	3365786	3366559
UN	837	.	NC_000913	3423889	3424444
UN	838	.	NC_000913	3424843	3424844
UN	839	.	NC_000913	3424846	3426673
UN	840	.	NC_000913	3426967	3428341
UN	841	.	NC_000913	3428345	3428345
UN	842	.	NC_000913	3470370	3470370
UN	843	.	NC_000913	3470373	3470542
UN	844	.	NC_000913	3583593	3583594
UN	845	.	NC_000913	3583602	3583603
UN	846	.	NC_000913	3583605	3583998
UN	847	.	NC_000913	3619468	3619468
UN	848	.	NC_000913	3619470	3620862
UN	849	.	NC_000913	3620864	3620864
UN	850	.	NC_000913	3621302	3621303
UN	851	.	NC_000913	3621305	3621305
UN	852	.	NC_000913	3621308	3622104
UN	853	.	NC_000913	3637366	3637366
UN	854	.	NC_000913	3652248	3653024
UN	855	.	NC_000913	3666611	3666652
UN	856	.	NC_000913	3666657	3666657
UN	857	.	NC_000913	3682261	3682294
UN	858	.	NC_000913	3731713	3731713
UN	859	.	NC_000913	3762484	3763853
UN	860	.	NC_000913	3764312	3765069
UN	861	.	NC_000913	3862661	3862661
UN	862	.	NC_000913	3942250	3943184
UN	863	.	NC_000913	3943186	3943205
UN	864	.	NC_000913	3943207	3943211
UN	865	.	NC_000913	3943213	3943221
UN	866	.	NC_000913	3944278	3944279
UN	867	.	NC_000913	3944286	3945357
UN	868	.	NC_000913	4035358	4035507
UN	869	.	NC_000913	4035914	4035914
UN	870	.	NC_000913	4035927	4035927
UN	871	.	NC_000913	4035931	4035931
UN	872	.	NC_000913	4035935	4035935
UN	873	.	NC_000913	4035937	4035937
UN	874	.	NC_000913	4035941	4035941
UN	875	.	NC_000913	4035948	4036890
UN	876	.	NC_000913	4036902	4036902
UN	877	.	NC_000913	4036911	4036911
UN	878	.	NC_000913	4037328	4037335
UN	879	.	NC_000913	4037611	4037611
UN	880	.	NC_000913	4037613	4037613
UN	881	.	NC_000913	4037615	4037615
UN	882	.	NC_000913	4037625	4037626
UN	883	.	NC_000913	4038057	4038461
UN	884	.	NC_000913	4038938	4039185
UN	885	.	NC_000913	4039571	4039571
UN	886	.	NC_000913	4039573	4040406
UN	887	.	NC_000913	4166501	4168003
UN	888	.	NC_000913	4168810	4171429
UN	889	.	NC_000913	4171885	4171885
UN	890	.	NC_000913	4176719	4176885
UN	891	.	NC_000913	4176890	4176892
UN	892	.	NC_000913	4176901	4176901
UN	893	.	NC_000913	4208331	4209520
UN	894	.	NC_000913	4209522	4209522
UN	895	.	NC_000913	4210210	4212911
UN	896	.	NC_000913	4498378	4499286
UN	897	.	NC_000913	4499289	4499289
UN	898	.	NC_000913	4507659	4508477
UN	899	.	NC_000913	4508479	4508479
UN	900	.	NC_000913	4542683	4542683