Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,590,854	Δ7,233 bp		[hipA]–hipB	[hipA], hipB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1590854	1598086	7233	43 [0]	[0] 43	[hipA]–hipB	[hipA],hipB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1590853	0 (0.000)	43 (0.660)	42/478	0.2	100%	intergenic (‑852/+1)	ydeT/hipA	fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA
	?	NC_000913	1598087 =	0 (0.000)					intergenic (‑5645/+530)	hipB/lsrK	antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase

GTAGGCATCATAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGTTATTGTTGCTTAATAAGAAAACTGTTTCTTTCAATAGGAAAA  >  NC_000913/1597838‑1598332                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      cagacactgcgctcttggcatggggcagggaataaccaggctatttctccatgcacaggccaattatgaaagaggagaggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcAt                                                                                                                                                                                                                                                      <  2:450244‑M2/2‑1 (MQ=255)                      ggggcagggaataaccaggctatttctccatgcacaggccaattatgaaagaggagaggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATacaaaca                                                                                                                                                                                                                                  <  2:55786‑M2/22‑1 (MQ=255)                                                 ccatgcccaggccacttatgaaagaggagaggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCCCGAAAGCGAAGAgtcgtc                                                                                                                                                                                                       >  2:437217‑M2/202‑250 (MQ=255)                                                 ccatgcacaggccaattatgaaagaggagaggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAgtcg                                                                                                                                                                                                         <  2:83154‑M2/47‑1 (MQ=255)                                                 ccatgcacaggccaattatgaaagaggagaggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCa                                                                                                                                                                                                      <  1:89281‑M2/50‑1 (MQ=255)                                                 ccatgcacaggccaattatgaaagaggagaggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatataATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAgtcg                                                                                                                                                                                                         <  2:328811‑M2/47‑1 (MQ=255)                                                                  atgaaagaggagaggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGaaa                                                                                                                                                                                      <  1:274221‑M2/66‑1 (MQ=255)                                                                              aggcttaagttcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCCCCATCTACAAACAATACAGCCACGACAGAGTTGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGt                                                                                                                                                                         >  2:126534‑M2/173‑251 (MQ=255)                                                                               ggcttaagttcttgaacctttaacgaatactgactaccagaaaagcacttcgcataacacagacatgatttaacataatatacattatgctcaccaatataaaccaaggaagaatccagtcgttggcgggcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCAATATACAAACAATACAGCCACGAAAGAGATGAGTCGTAAGACATTAAAAATGAAACTTATTAAAATGTc                                                                                                                                                                        <  2:328895‑M2/80‑1 (MQ=255)                                                                                        tcttgaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTg                                                                                                                                                               >  2:208635‑M2/163‑251 (MQ=255)                                                                                            gaaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTAt                                                                                                                                                            <  1:149048‑M2/92‑1 (MQ=255)                                                                                             aaccctgaacgaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTg                                                                                                                                                          >  1:244696‑M2/158‑251 (MQ=255)                                                                                                       gaataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcacaaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGtt                                                                                                                                                <  1:126534‑M2/104‑1 (MQ=255)                                                                                                         ataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAANTTGTCAGAGGTCTGTATTGAGTGTTAGTTgg                                                                                                                                              >  2:254124‑M2/146‑251 (MQ=255)                                                                                                         ataacgactaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTgg                                                                                                                                              <  1:240028‑M2/106‑1 (MQ=255)                                                                                                               actaccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTgg                                                                                                                                        <  1:13463‑M2/112‑1 (MQ=255)                                                                                                                   ccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACAtt                                                                                                                                                                                                <  2:243614‑M2/56‑1 (MQ=255)                                                                                                                   ccagaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACAtt                                                                                                                                                                                                >  1:243614‑M2/136‑191 (MQ=255)                                                                                                                     agaaaagcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGgt                                                                                                                                  >  1:220204‑M2/134‑251 (MQ=255)                                                                                                                       aaaagcacttcgcatcactcagacatgatttnacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGgtgt                                                                                                                                <  2:244696‑M2/120‑1 (MQ=255)                                                                                                                          agcacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCa                                                                                                                              >  1:322616‑M2/129‑250 (MQ=255)                                                                                                                            cacttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAAtt                                                                                                                           <  2:332545‑M2/125‑1 (MQ=255)                                                                                                                               ttcgcatcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTgg                                                                                                                        >  2:181203‑M2/124‑251 (MQ=255)                                                                                                                                    atcactcagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCCGAGGACTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAAt                                                                                                                   >  2:311412‑M2/119‑251 (MQ=255)                                                                                                                                          cagacatgatttaacataatatacattatgcgcaccaatataaaccaaggaagaatcccgtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCt                                                                                                              <  2:418193‑M2/138‑1 (MQ=255)                                                                                                                                                      aacataatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcgttcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCTTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGaa                                                                                                  <  1:255528‑M2/150‑1 (MQ=255)                                                                                                                                                           aatatacattatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGAt                                                                                             <  1:239512‑M2/155‑1 (MQ=255)                                                                                                                                                                  attatgcgcaccaatataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAGGGGATGAGTCGTAAGACATTAAAAATGAACCTTATTAATTTGCAAGAGGTCTGTATTGGTTGTTAGTGGGGGGGGGGAAGGGGTCATTTTGGCTAATTTGCTAATGCTTTGGAATTGATAGATTaa                                                                                      >  1:338031‑M2/89‑250 (MQ=255)                                                                                                                                                                             caatataaaccaaggaagaattcatgcgttggcggtcatgagtgtcatgctcattaacaatgaccaaaccccataacATAAACGCTCCATATAAAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACAGTAAAAATGAAACGTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGt                                                                          <  2:101926‑M2/174‑1 (MQ=255)                                                                                                                                                                               atataaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTc                                                                        >  1:195356‑M2/76‑251 (MQ=255)                                                                                                                                                                                   aaaccaaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCttat                                                                    <  1:284189‑M2/180‑1 (MQ=255)                                                                                                                                                                                      ccaaggaagaatccaggcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCttatttt                                                                 <  1:192881‑M2/183‑1 (MQ=255)                                                                                                                                                                                       caaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTcttattttt                                                                >  2:200285‑M2/68‑250 (MQ=255)                                                                                                                                                                                        aaggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCttattttat                                                               <  1:437217‑M2/185‑1 (MQ=255)                                                                                                                                                                                          ggaagaatccagtcgttggcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTtattttattt                                                             >  1:156916‑M2/65‑251 (MQ=255)                                                                                                                                                                                                            gcggtcatgattgtcatgctcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGtt                                           <  1:185834‑M2/205‑1 (MQ=255)                                                                                                                                                                                                                               tcattaacaatgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGTTATTGTTGCTTAATAAGaa                         >  1:321409‑M2/28‑250 (MQ=255)                                                                                                                                                                                                                                        atgaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCTAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGTTATTGTTGCTTAATAAGAAAACTGtttct               <  1:457290‑M2/233‑1 (MQ=255)                                                                                                                                                                                                                                          gaccaaaccccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGTTATTGTTGCTTAATAAGAAAACTGtttcttt             <  1:416419‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                                  cccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAata                                                        >  2:126756‑M2/9‑200 (MQ=255)                                                                                                                                                                                                                                                  cccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAata                                                        <  1:126756‑M2/192‑1 (MQ=255)                                                                                                                                                                                                                                                  cccatatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGTTATTGTTGCTTAATAAGAAAACTGTTTCTTTCAATAGGa     <  1:491901‑M2/243‑1 (MQ=255)                                                                                                                                                                                                                                                     atatcATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGGCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTGGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGTTATTGTTGCTTAATAAGAAAACTGTTTCTTTCAATAGGaaaa  <  2:195356‑M2/246‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      GTAGGCATCATAAGCAACATCAGTATCAATATTGGTAATCTGATCATTATCAACTTCCAGACTTGCACCAGACGCTGAACCGCTTAGTGCCAGCAAAACACCCAGCGTCAATCTACTGAATTTCGTTGTCAGTCCAGAGGATTTACGCAAATTAACCGTCGATGTTTTACCTGCCCTGCGAGTTAATTCCGAGCAGGCCTGAAATACCTGTAGAGTGCAATTCCATATCACGCGATAGATTCTATTCATATAAACGCTCCATATACAAACAATACAGCCACGAAAGAGATGAGTCGTCAGACATTAAAAATGAAACTTATTAAATTGTCAGAGGTCTGTATTGAGTGTTAGTTGGAGGTGGGAAGGTGTCAATTTGGCTAATTTGCTAATGCTTTCGAATTGATAGATTAAAAATTGCATAGTTCTTATTTTATTTAAATATGAACTATGAGTTATTGTTGCTTAATAAGAAAACTGTTTCTTTCAATAGGAAAA  >  NC_000913/1597838‑1598332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑