mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,878,947 | 0 | C | T | 42.9% | 22.6 / 11.8 | 28 | E276K (GAA→AAA) | cas1 | multifunctional nuclease Cas1 |
| * | NC_000913 | 3,675,411 | 0 | T | G | 32.7% | 70.3 / 10.7 | 52 | V209G (GTC→GGC) | yhjE | putative transporter YhjE |
| * | NC_000913 | 1,174,626 | 0 | G | A | 30.0% | 87.4 / 13.7 | 50 | F180F (TTC→TTT) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 974,449 | 0 | A | G | 28.8% | 96.3 / 18.7 | 59 | D44G (GAT→GGT) | mukF | chromosome partitioning protein MukF |
| * | NC_000913 | 1,658,167 | 0 | G | T | 25.0% | 45.4 / 10.2 | 40 | L33F (TTG→TTT) | ynfE | putative selenate reductase YnfE |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3873740 | 63 (1.370) | 3 (0.070) | 3/478 | 3.9 | 4.1% | coding (735/879 nt) | dgoK | 2‑dehydro‑3‑deoxygalactonokinase |
| ? | NC_000913 | 4131650 = | 77 (1.700) | coding (1816/2433 nt) | metL | fused aspartate kinase/homoserine dehydrogenase 2 | |||||