mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 40 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 311,717 | 0 | G | A | 75.9% | 46.3 / 14.8 | 31 | intergenic (‑381/‑395) | matA/ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| * | NC_000913 | 4,040,623 | 0 | G | A | 68.6% | 24.5 / 29.3 | 35 | noncoding (107/120 nt) | rrfA | 5S ribosomal RNA |
| * | NC_000913 | 367,573 | 0 | G | A | 61.2% | 43.0 / 68.2 | 68 | intergenic (‑63/+14) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| * | NC_000913 | 331,879 | 0 | G | A | 58.6% | 1.7 / 35.6 | 29 | intergenic (+3/‑492) | yahV/pdeL | protein YahV/DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL |
| * | NC_000913 | 343,523 | 0 | G | A | 58.5% | 20.1 / 42.1 | 41 | A214T (GCA→ACA) | yahK | aldehyde reductase, NADPH‑dependent |
| * | NC_000913 | 286,569 | 0 | G | A | 57.4% | 27.4 / 66.5 | 69 | S392N (AGC→AAC) | yagG | putative D‑xylonate transporter YagG |
| * | NC_000913 | 306,023 | 0 | G | A | 56.7% | 2.9 / 84.1 | 61 | T265T (ACC→ACT) | ecpD | fimbrial adhesin EcpD |
| * | NC_000913 | 303,541 | 0 | G | A | 55.6% | 8.0 / 42.9 | 36 | R184K (AGA→AAA) | yagU | DUF1440 domain‑containing inner membrane protein YagU |
| * | NC_000913 | 327,999 | 0 | G | A | 55.3% | ‑2.2 / 97.2 | 77 | S245S (TCC→TCT) | betB | betaine aldehyde dehydrogenase |
| * | NC_000913 | 292,433 | 0 | G | A | 54.8% | ‑5.8 / 58.6 | 42 | F172F (TTC→TTT) | yagK | uncharacterized protein YagK |
| * | NC_000913 | 4,094,547 | 0 | T | C | 53.3% | 1.6 / 16.1 | 15 | intergenic (‑275/+176) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| * | NC_000913 | 290,175 | 0 | G | A | 53.1% | ‑2.8 / 89.6 | 64 | T44I (ACC→ATC) | argF | ornithine carbamoyltransferase ArgF |
| * | NC_000913 | 276,899 | 0 | G | A | 50.8% | ‑5.2 / 81.5 | 62 | G62E (GGG→GAG) | mmuM | homocysteine S‑methyltransferase |
| * | NC_000913 | 298,441 | 0 | G | A | 50.0% | ‑0.5 / 106.2 | 76 | R96C (CGC→TGC) | paoD | molybdenum cofactor insertion chaperone PaoD |
| * | NC_000913 | 2,304,537 | 0 | A | G | 50.0% | ‑2.7 / 10.5 | 10 | intergenic (+144/+571) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 325,394 | 0 | G | A | 48.6% | 2.2 / 45.3 | 35 | intergenic (‑30/+183) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase |
| * | NC_000913 | 362,730 | 0 | G | A | 47.2% | 9.3 / 40.9 | 36 | G150G (GGC→GGT) | lacY | lactose permease |
| * | NC_000913 | 317,788 | 0 | C | T | 46.5% | 12.3 / 51.0 | 44 | A178T (GCG→ACG) | rclC | DUF417 domain‑containing inner membrane protein RclC |
| * | NC_000913 | 367,812 | 0 | G | A | 46.0% | 28.6 / 51.2 | 52 | G203G (GGC→GGT) | mhpR | DNA‑binding transcriptional activator MhpR |
| * | NC_000913 | 358,484 | 0 | G | A | 46.0% | 20.4 / 92.1 | 75 | S69S (AGC→AGT) | cynR | DNA‑binding transcriptional dual regulator CynR |