#=GENOME_DIFF	1.0
#=CREATED	10:49:46 29 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20240527run10/CV76_S10_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20240527run10/CV76_S10_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20240527run10/CV76_S10_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV76_S10_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV76_S10_L001_R2_001.fastq.gz
#=CONVERTED-BASES	150101782
#=CONVERTED-READS	616487
#=INPUT-BASES	150104337
#=INPUT-READS	616560
#=MAPPED-BASES	135282231
#=MAPPED-READS	557978
SNP	1	331	NC_000913	1903	A
SNP	2	332	NC_000913	10696	T
SNP	3	333	NC_000913	23501	T
SNP	4	334	NC_000913	31683	T
SNP	5	335	NC_000913	42108	A
SNP	6	336	NC_000913	59968	T
SNP	7	337	NC_000913	76249	A
SNP	8	338	NC_000913	88571	A
SNP	9	339	NC_000913	113695	A
SNP	10	340	NC_000913	156068	G
SNP	11	341	NC_000913	157585	T
SNP	12	342	NC_000913	224625	A
SNP	13	348	NC_000913	284535	G
SNP	14	360	NC_000913	313543	A
DEL	15	375	NC_000913	366212	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=G
SNP	16	382	NC_000913	390087	A
SNP	17	383	NC_000913	466148	A
SNP	18	384	NC_000913	469271	A
SUB	19	385,386	NC_000913	480295	2	AA
SNP	20	387	NC_000913	502232	A
SNP	21	388	NC_000913	662269	T
SNP	22	389	NC_000913	696470	T
SNP	23	390	NC_000913	784677	A
SNP	24	391	NC_000913	881531	T
SNP	25	392	NC_000913	1015891	T
SNP	26	393	NC_000913	1037292	T
MOB	27	705,708	NC_000913	1091173	IS5	-1	4
SNP	28	394	NC_000913	1137212	T
SNP	29	395	NC_000913	1138130	T
SNP	30	396	NC_000913	1147196	T
SNP	31	397	NC_000913	1156913	A
SNP	32	398	NC_000913	1169836	G
SNP	33	399	NC_000913	1174883	T
SNP	34	400	NC_000913	1175517	G
SNP	35	401	NC_000913	1188861	T
SNP	36	402	NC_000913	1189980	G
SNP	37	403	NC_000913	1191644	T
SNP	38	404	NC_000913	1197637	T
MOB	39	709,711	NC_000913	1199869	IS3	1	4	ins_start=GA
SNP	40	405	NC_000913	1235755	T
SNP	41	406	NC_000913	1239343	T
SNP	42	407	NC_000913	1250264	T
SNP	43	408	NC_000913	1257135	T
SNP	44	409	NC_000913	1268367	T
SNP	45	410	NC_000913	1269702	T
SNP	46	411	NC_000913	1282627	T
SNP	47	412	NC_000913	1290669	A
SNP	48	413	NC_000913	1297496	A
DEL	49	697,714	NC_000913	1299499	1199
SNP	50	414	NC_000913	1301750	T
SNP	51	415	NC_000913	1301992	T
SNP	52	416	NC_000913	1306710	T
SNP	53	417	NC_000913	1306736	G
SNP	54	418	NC_000913	1317613	T
SNP	55	419	NC_000913	1321672	T
SNP	56	420	NC_000913	1322759	A
SNP	57	421	NC_000913	1335123	T
SNP	58	422	NC_000913	1336353	T
SNP	59	423	NC_000913	1337394	G
SNP	60	424	NC_000913	1358859	C
SNP	61	425	NC_000913	1384652	G
SNP	62	426	NC_000913	1387908	T
SNP	63	427	NC_000913	1395566	T
SNP	64	428	NC_000913	1399069	T
MOB	65	715,716	NC_000913	1399590	IS5	1	4
SNP	66	429	NC_000913	1401893	A
SNP	67	430	NC_000913	1405569	T
SNP	68	431	NC_000913	1418807	T
SNP	69	432	NC_000913	1419414	T
SNP	70	433	NC_000913	1428107	T
SNP	71	434	NC_000913	1430310	T
SNP	72	435	NC_000913	1441765	T
SNP	73	436	NC_000913	1453992	A
SNP	74	437	NC_000913	1460345	T
SNP	75	438	NC_000913	1491105	T
SNP	76	439	NC_000913	1501974	T
SNP	77	440	NC_000913	1514985	T
SNP	78	441	NC_000913	1520526	T
SNP	79	442	NC_000913	1531318	T
SNP	80	443	NC_000913	1534321	T
SNP	81	444	NC_000913	1536304	T
SNP	82	445	NC_000913	1587323	T
SNP	83	446	NC_000913	1597364	C
SNP	84	447	NC_000913	1626475	T
SNP	85	448	NC_000913	1643679	T
SNP	86	449	NC_000913	1652331	C
SNP	87	450	NC_000913	1715661	T
SNP	88	451	NC_000913	1738631	C
SNP	89	452	NC_000913	1743164	T
SNP	90	453	NC_000913	1776100	A
SNP	91	454	NC_000913	1786965	T
SNP	92	455	NC_000913	1790949	T
SNP	93	456	NC_000913	1791057	T
SNP	94	457	NC_000913	1795562	T
SNP	95	458	NC_000913	1798171	T
SNP	96	459	NC_000913	1812346	T
SNP	97	460	NC_000913	1828654	T
SNP	98	461	NC_000913	1844146	T
SNP	99	462	NC_000913	1847969	T
SNP	100	463	NC_000913	1853057	T
SNP	101	464	NC_000913	1853977	T
SNP	102	465	NC_000913	1866420	T
SNP	103	466	NC_000913	1876099	T
SNP	104	467	NC_000913	1878855	T
SNP	105	468	NC_000913	1881623	T
SNP	106	469	NC_000913	1894839	C
SNP	107	470	NC_000913	1906796	T
MOB	108	717,718	NC_000913	1909925	IS5	1	4
SNP	109	471	NC_000913	1940095	T
SNP	110	472	NC_000913	1948824	T
SNP	111	473	NC_000913	1955010	A
SNP	112	474	NC_000913	1969982	T
DEL	113	698,719	NC_000913	1978503	776
SNP	114	475	NC_000913	1994637	G
SNP	115	476	NC_000913	2033271	T
SNP	116	477	NC_000913	2040289	T
SNP	117	478	NC_000913	2040433	A
SNP	118	479	NC_000913	2041411	A
SNP	119	480	NC_000913	2046506	T
SNP	120	481	NC_000913	2064246	T
SNP	121	482	NC_000913	2064616	T
SNP	122	483	NC_000913	2080405	T
SNP	123	484	NC_000913	2082863	T
SNP	124	485	NC_000913	2083929	T
SNP	125	486	NC_000913	2084330	T
SNP	126	487	NC_000913	2085319	A
SNP	127	488	NC_000913	2086634	A
SNP	128	489	NC_000913	2103891	A
DEL	129	490	NC_000913	2111259	1
SNP	130	491	NC_000913	2122908	A
SNP	131	492	NC_000913	2134498	A
SNP	132	493	NC_000913	2137543	A
DEL	133	494,495	NC_000913	2173363	2
SNP	134	496	NC_000913	2173448	T
MOB	135	721,722	NC_000913	2174359	IS5	1	4
SNP	136	497	NC_000913	2188087	C
SNP	137	499	NC_000913	2329209	G
SNP	138	500	NC_000913	2339162	T
SNP	139	501	NC_000913	2384808	T
SNP	140	502	NC_000913	2410419	A
SNP	141	503	NC_000913	2484827	T
SNP	142	504	NC_000913	2510609	T
DEL	143	699,723	NC_000913	2558699	6790
SNP	144	505	NC_000913	2587112	T
SNP	145	506	NC_000913	2732992	A
SNP	146	507	NC_000913	2789286	A
SNP	147	508	NC_000913	2804133	T
DEL	148	509	NC_000913	2814459	1
SNP	149	510	NC_000913	2814461	T
SNP	150	511	NC_000913	2817197	A
SNP	151	512	NC_000913	2823288	T
SNP	152	513	NC_000913	2866744	A
SNP	153	514	NC_000913	2867454	A
SNP	154	515	NC_000913	2871153	G
SUB	155	516,517	NC_000913	2926543	2	TT
SNP	156	518	NC_000913	2926772	A
SNP	157	519	NC_000913	3009566	A
SNP	158	520	NC_000913	3028546	A
SNP	159	521	NC_000913	3050472	A
SNP	160	522	NC_000913	3061916	T
SNP	161	523	NC_000913	3065449	A
SNP	162	524	NC_000913	3065861	A
SNP	163	525	NC_000913	3089260	C
SNP	164	526	NC_000913	3090968	A
SNP	165	527	NC_000913	3104887	A
SNP	166	528	NC_000913	3120786	A
SNP	167	529	NC_000913	3121033	C
SNP	168	530	NC_000913	3127981	A
SNP	169	531	NC_000913	3130161	A
SNP	170	532	NC_000913	3132077	A
SNP	171	533	NC_000913	3133175	A
SNP	172	534	NC_000913	3134263	A
SNP	173	535	NC_000913	3145944	A
SNP	174	536	NC_000913	3150316	A
SNP	175	537	NC_000913	3162216	A
SNP	176	538	NC_000913	3176625	A
SNP	177	539	NC_000913	3179383	A
SNP	178	540	NC_000913	3186297	A
SNP	179	541	NC_000913	3193351	A
SNP	180	542	NC_000913	3204617	A
DEL	181	543	NC_000913	3207549	1
SNP	182	544	NC_000913	3219128	A
SNP	183	545	NC_000913	3224895	T
SNP	184	546	NC_000913	3227339	T
SNP	185	547	NC_000913	3240423	T
SNP	186	548	NC_000913	3256157	T
SNP	187	549	NC_000913	3259283	A
SNP	188	550	NC_000913	3270497	T
SNP	189	551	NC_000913	3275902	T
SNP	190	552	NC_000913	3292312	T
SNP	191	553	NC_000913	3304647	C
SNP	192	554	NC_000913	3329743	T
SNP	193	555	NC_000913	3388041	G
SNP	194	556	NC_000913	3413696	C
SNP	195	557	NC_000913	3506393	C
SNP	196	558	NC_000913	3518501	T
SNP	197	559	NC_000913	3524184	T
SNP	198	560	NC_000913	3536038	A
SNP	199	561	NC_000913	3558291	T
SNP	200	562	NC_000913	3559621	T
SNP	201	563	NC_000913	3560119	G
INS	202	564	NC_000913	3560455	G
SNP	203	565	NC_000913	3576313	G
SNP	204	566	NC_000913	3579050	A
SNP	205	567	NC_000913	3581316	A
SNP	206	568	NC_000913	3581850	A
SNP	207	569	NC_000913	3585517	A
SNP	208	570	NC_000913	3587531	A
SNP	209	571	NC_000913	3588787	A
SNP	210	572	NC_000913	3589956	A
SNP	211	573	NC_000913	3590251	T
SNP	212	574	NC_000913	3618836	T
SNP	213	575	NC_000913	3621090	T
SNP	214	576	NC_000913	3633749	T
SNP	215	577	NC_000913	3647677	T
SNP	216	578	NC_000913	3684443	T
SNP	217	579	NC_000913	3707947	A
SNP	218	580	NC_000913	3713979	T
SNP	219	581	NC_000913	3725176	G
SNP	220	582	NC_000913	3744369	T
SNP	221	583	NC_000913	3781049	T
SNP	222	584	NC_000913	3803453	T
SNP	223	585	NC_000913	3803945	T
SNP	224	586	NC_000913	3809942	T
INS	225	587	NC_000913	3815883	C
SNP	226	588	NC_000913	3827026	T
SNP	227	589	NC_000913	3829385	T
SNP	228	590	NC_000913	3834845	T
SNP	229	591	NC_000913	3850507	T
SNP	230	592	NC_000913	3870464	T
SNP	231	593	NC_000913	3900610	T
SNP	232	594	NC_000913	3904907	T
SNP	233	595	NC_000913	3914648	T
SNP	234	596	NC_000913	3926894	T
SNP	235	597	NC_000913	3927292	C
SNP	236	598	NC_000913	3937909	A
SNP	237	599	NC_000913	3937997	A
DEL	238	600	NC_000913	3938441	1
SNP	239	601	NC_000913	3941874	T
SNP	240	602	NC_000913	3946246	A
SNP	241	603	NC_000913	3950099	T
SNP	242	604	NC_000913	3956003	A
SNP	243	606	NC_000913	4084932	T
SNP	244	608	NC_000913	4139298	A
SNP	245	609	NC_000913	4160157	A
SNP	246	610	NC_000913	4171728	T
SNP	247	611	NC_000913	4175827	T
SNP	248	612	NC_000913	4178883	T
SNP	249	613	NC_000913	4179001	T
SNP	250	614	NC_000913	4185777	T
SNP	251	615	NC_000913	4193177	T
SNP	252	616	NC_000913	4193707	G
SNP	253	617	NC_000913	4193820	T
SNP	254	618	NC_000913	4219752	T
SNP	255	619	NC_000913	4222743	T
SNP	256	620	NC_000913	4223638	C
SNP	257	621	NC_000913	4224483	T
SNP	258	622	NC_000913	4234479	T
SNP	259	623	NC_000913	4249684	T
SNP	260	624	NC_000913	4265668	T
SNP	261	625	NC_000913	4269449	T
SNP	262	626	NC_000913	4271130	T
SNP	263	627	NC_000913	4278488	T
SNP	264	628	NC_000913	4282536	T
SNP	265	629	NC_000913	4284077	T
SNP	266	630	NC_000913	4286033	T
SNP	267	631	NC_000913	4296187	T
SNP	268	632	NC_000913	4296300	T
INS	269	633,634	NC_000913	4296381	GC
SNP	270	635	NC_000913	4297469	T
SNP	271	636	NC_000913	4298199	T
SNP	272	637	NC_000913	4301071	T
SNP	273	638	NC_000913	4303755	T
SNP	274	639	NC_000913	4311337	T
SNP	275	640	NC_000913	4320079	T
SNP	276	641	NC_000913	4320785	T
SNP	277	642	NC_000913	4322605	T
SNP	278	643	NC_000913	4325644	T
SNP	279	644	NC_000913	4325837	T
SNP	280	645	NC_000913	4332310	T
SNP	281	646	NC_000913	4337864	T
SNP	282	647	NC_000913	4342825	T
SNP	283	648	NC_000913	4349259	T
SNP	284	649	NC_000913	4351519	T
SNP	285	650	NC_000913	4351590	T
SNP	286	651	NC_000913	4359909	T
SNP	287	652	NC_000913	4364798	T
SNP	288	653	NC_000913	4366668	T
SNP	289	654	NC_000913	4371401	T
SNP	290	655	NC_000913	4373421	T
SNP	291	656	NC_000913	4380469	T
SNP	292	657	NC_000913	4388120	T
SNP	293	658	NC_000913	4389838	T
SNP	294	659	NC_000913	4401607	T
SNP	295	660	NC_000913	4403010	T
SNP	296	661	NC_000913	4407045	T
SNP	297	662	NC_000913	4414625	T
SNP	298	663	NC_000913	4418862	T
SNP	299	664	NC_000913	4426929	T
SNP	300	665	NC_000913	4433459	T
MOB	301	720,724	NC_000913	4434629	IS1	-1	8
SNP	302	666	NC_000913	4435124	T
SNP	303	667	NC_000913	4435750	T
SNP	304	668	NC_000913	4451280	T
SNP	305	669	NC_000913	4457392	T
SNP	306	671	NC_000913	4482901	T
SNP	307	672	NC_000913	4486869	A
SNP	308	673	NC_000913	4487022	T
SNP	309	674	NC_000913	4489775	T
SNP	310	675	NC_000913	4494499	T
SNP	311	676	NC_000913	4501500	T
SNP	312	677	NC_000913	4510238	G
SNP	313	678	NC_000913	4517355	T
SNP	314	679	NC_000913	4524401	T
SNP	315	680	NC_000913	4524596	T
SNP	316	681	NC_000913	4529039	T
SNP	317	682	NC_000913	4530797	T
SNP	318	683	NC_000913	4541261	T
MOB	319	725,726	NC_000913	4542042	IS1	1	8
SNP	320	684	NC_000913	4553671	T
SNP	321	685	NC_000913	4564385	T
SNP	322	686	NC_000913	4570550	T
SNP	323	687	NC_000913	4571280	T
SNP	324	688	NC_000913	4585673	T
SNP	325	689	NC_000913	4587365	T
SNP	326	690	NC_000913	4604517	T
SNP	327	691	NC_000913	4630295	T
SNP	328	692	NC_000913	4636925	C
SNP	329	693	NC_000913	4638058	T
SNP	330	694	NC_000913	4638240	A
RA	331	.	NC_000913	1903	0	G	A	consensus_score=157.2	frequency=1	major_base=A	major_cov=20/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/26
RA	332	.	NC_000913	10696	0	C	T	consensus_score=88.9	frequency=1	major_base=T	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	333	.	NC_000913	23501	0	C	T	bias_e_value=3747710	bias_p_value=0.807408	consensus_score=168.7	fisher_strand_p_value=0.45283	frequency=1	ks_quality_p_value=0.988456	major_base=T	major_cov=29/23	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=29/23	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	334	.	NC_000913	31683	0	C	T	consensus_score=83.7	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	335	.	NC_000913	42108	0	G	A	consensus_score=61.9	frequency=1	major_base=A	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	336	.	NC_000913	59968	0	C	T	consensus_score=94.0	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	337	.	NC_000913	76249	0	G	A	consensus_score=103.6	frequency=1	major_base=A	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	338	.	NC_000913	88571	0	G	A	consensus_score=141.7	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	339	.	NC_000913	113695	0	G	A	bias_e_value=3863270	bias_p_value=0.832305	consensus_score=78.0	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/11	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=13/11	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/13
RA	340	.	NC_000913	156068	0	A	G	consensus_score=36.8	frequency=1	major_base=G	major_cov=4/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/8
RA	341	.	NC_000913	157585	0	C	T	consensus_score=84.3	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	342	.	NC_000913	224625	0	T	A	bias_e_value=4640890	bias_p_value=0.999837	consensus_score=21.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.981982	major_base=A	major_cov=5/5	major_frequency=9.091e-01	minor_base=T	minor_cov=0/1	new_cov=5/5	polymorphism_frequency=9.091e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=5/6
RA	343	.	NC_000913	246747	0	G	T	bias_e_value=1757940	bias_p_value=0.378733	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.5	fisher_strand_p_value=0.566101	frequency=4.314e-01	ks_quality_p_value=0.215574	major_base=G	major_cov=17/12	major_frequency=5.686e-01	minor_base=T	minor_cov=15/7	new_cov=15/7	polymorphism_frequency=4.314e-01	polymorphism_score=61.9	prediction=polymorphism	ref_cov=17/12	total_cov=32/19
RA	344	.	NC_000913	266442	0	T	G	bias_e_value=983.061	bias_p_value=0.000211791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.2	fisher_strand_p_value=1.77383e-05	frequency=2.075e-01	ks_quality_p_value=1	major_base=T	major_cov=12/30	major_frequency=7.925e-01	minor_base=G	minor_cov=11/0	new_cov=11/0	polymorphism_frequency=2.075e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=12/30	total_cov=23/30
RA	345	.	NC_000913	276899	0	G	A	bias_e_value=4227780	bias_p_value=0.910836	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.2	fisher_strand_p_value=0.799672	frequency=5.082e-01	ks_quality_p_value=0.761083	major_base=A	major_cov=17/14	major_frequency=5.082e-01	minor_base=G	minor_cov=15/15	new_cov=17/14	polymorphism_frequency=5.082e-01	polymorphism_score=81.5	prediction=polymorphism	ref_cov=15/15	total_cov=33/29
RA	346	.	NC_000913	281291	0	G	A	bias_e_value=3973900	bias_p_value=0.85614	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=1	frequency=2.963e-01	ks_quality_p_value=0.514085	major_base=G	major_cov=40/17	major_frequency=7.037e-01	minor_base=A	minor_cov=17/7	new_cov=17/7	polymorphism_frequency=2.963e-01	polymorphism_score=57.0	prediction=polymorphism	ref_cov=40/17	total_cov=57/24
RA	347	.	NC_000913	283338	0	G	A	bias_e_value=4457880	bias_p_value=0.960409	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.8	fisher_strand_p_value=0.84967	frequency=4.248e-01	ks_quality_p_value=0.861675	major_base=G	major_cov=33/32	major_frequency=5.752e-01	minor_base=A	minor_cov=23/25	new_cov=23/25	polymorphism_frequency=4.248e-01	polymorphism_score=128.9	prediction=polymorphism	ref_cov=33/32	total_cov=56/58
RA	348	.	NC_000913	284535	0	T	G	consensus_score=452.4	frequency=1	major_base=G	major_cov=52/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/71
RA	349	.	NC_000913	286569	0	G	A	bias_e_value=3973330	bias_p_value=0.856016	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.4	fisher_strand_p_value=1	frequency=5.735e-01	ks_quality_p_value=0.513898	major_base=A	major_cov=17/22	major_frequency=5.735e-01	minor_base=G	minor_cov=12/17	new_cov=17/22	polymorphism_frequency=5.735e-01	polymorphism_score=66.5	prediction=polymorphism	ref_cov=12/17	total_cov=30/39
RA	350	.	NC_000913	287247	0	G	C	bias_e_value=14.0882	bias_p_value=3.03518e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.2	fisher_strand_p_value=1.83848e-07	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=24/45	major_frequency=7.931e-01	minor_base=C	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=24/45	total_cov=43/45
RA	351	.	NC_000913	288382	0	A	C	bias_e_value=2732.12	bias_p_value=0.000588608	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.2	fisher_strand_p_value=5.44048e-05	frequency=3.421e-01	ks_quality_p_value=1	major_base=A	major_cov=27/23	major_frequency=6.579e-01	minor_base=C	minor_cov=2/24	new_cov=2/24	polymorphism_frequency=3.421e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=27/23	total_cov=29/47
RA	352	.	NC_000913	290175	0	G	A	bias_e_value=2937100	bias_p_value=0.63277	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.8	fisher_strand_p_value=0.799859	frequency=5.312e-01	ks_quality_p_value=0.346481	major_base=A	major_cov=13/21	major_frequency=5.312e-01	minor_base=G	minor_cov=13/17	new_cov=13/21	polymorphism_frequency=5.312e-01	polymorphism_score=89.6	prediction=polymorphism	ref_cov=13/17	total_cov=26/38
RA	353	.	NC_000913	292433	0	G	A	bias_e_value=1551390	bias_p_value=0.334231	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.232089	frequency=5.476e-01	ks_quality_p_value=0.438332	major_base=A	major_cov=13/10	major_frequency=5.476e-01	minor_base=G	minor_cov=7/12	new_cov=13/10	polymorphism_frequency=5.476e-01	polymorphism_score=58.6	prediction=polymorphism	ref_cov=7/12	total_cov=20/22
RA	354	.	NC_000913	298441	0	G	A	bias_e_value=4041600	bias_p_value=0.870724	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.5	fisher_strand_p_value=0.817764	frequency=5.000e-01	ks_quality_p_value=0.656356	major_base=G	major_cov=22/16	major_frequency=5.000e-01	minor_base=A	minor_cov=20/18	new_cov=20/18	polymorphism_frequency=5.000e-01	polymorphism_score=106.2	prediction=polymorphism	ref_cov=22/16	total_cov=42/34
RA	355	.	NC_000913	302186	0	C	T	bias_e_value=2753640	bias_p_value=0.593246	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.3	fisher_strand_p_value=0.77016	frequency=4.255e-01	ks_quality_p_value=0.321502	major_base=C	major_cov=14/13	major_frequency=5.745e-01	minor_base=T	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=4.255e-01	polymorphism_score=56.1	prediction=polymorphism	ref_cov=14/13	total_cov=23/24
RA	356	.	NC_000913	303541	0	G	A	bias_e_value=68288.5	bias_p_value=0.0147121	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.0	fisher_strand_p_value=0.0020456	frequency=5.556e-01	ks_quality_p_value=1	major_base=A	major_cov=5/15	major_frequency=5.556e-01	minor_base=G	minor_cov=13/3	new_cov=5/15	polymorphism_frequency=5.556e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=13/3	total_cov=18/18
RA	357	.	NC_000913	306023	0	G	A	bias_e_value=494288	bias_p_value=0.10649	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.9	fisher_strand_p_value=0.602457	frequency=5.667e-01	ks_quality_p_value=0.0367444	major_base=A	major_cov=18/16	major_frequency=5.667e-01	minor_base=G	minor_cov=16/10	new_cov=18/16	polymorphism_frequency=5.667e-01	polymorphism_score=84.1	prediction=polymorphism	ref_cov=16/10	total_cov=34/27
RA	358	.	NC_000913	311717	0	G	A	bias_e_value=4467380	bias_p_value=0.962455	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.3	fisher_strand_p_value=1	frequency=7.586e-01	ks_quality_p_value=0.738797	major_base=A	major_cov=13/9	major_frequency=7.586e-01	minor_base=G	minor_cov=4/3	new_cov=13/9	polymorphism_frequency=7.586e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=4/3	total_cov=18/13
RA	359	.	NC_000913	312865	0	G	A	bias_e_value=2170440	bias_p_value=0.467602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.5	fisher_strand_p_value=0.189359	frequency=3.175e-01	ks_quality_p_value=0.886979	major_base=G	major_cov=20/23	major_frequency=6.825e-01	minor_base=A	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=3.175e-01	polymorphism_score=49.4	prediction=polymorphism	ref_cov=20/23	total_cov=33/31
RA	360	.	NC_000913	313543	0	G	A	consensus_score=127.2	frequency=1	major_base=A	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	361	.	NC_000913	317788	0	C	T	bias_e_value=3363220	bias_p_value=0.724574	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.366219	frequency=4.651e-01	ks_quality_p_value=0.974447	major_base=C	major_cov=14/9	major_frequency=5.349e-01	minor_base=T	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=4.651e-01	polymorphism_score=51.0	prediction=polymorphism	ref_cov=14/9	total_cov=23/21
RA	362	.	NC_000913	325394	0	G	A	bias_e_value=3039090	bias_p_value=0.654744	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=0.317539	frequency=4.857e-01	ks_quality_p_value=0.928025	major_base=G	major_cov=11/7	major_frequency=5.143e-01	minor_base=A	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=4.857e-01	polymorphism_score=45.3	prediction=polymorphism	ref_cov=11/7	total_cov=18/17
RA	363	.	NC_000913	327999	0	G	A	bias_e_value=2377170	bias_p_value=0.512138	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.2	fisher_strand_p_value=0.489075	frequency=5.526e-01	ks_quality_p_value=0.396664	major_base=A	major_cov=24/18	major_frequency=5.526e-01	minor_base=G	minor_cov=16/18	new_cov=24/18	polymorphism_frequency=5.526e-01	polymorphism_score=97.2	prediction=polymorphism	ref_cov=16/18	total_cov=41/36
RA	364	.	NC_000913	331879	0	G	A	bias_e_value=2238270	bias_p_value=0.482214	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.7	fisher_strand_p_value=0.273172	frequency=5.862e-01	ks_quality_p_value=0.645239	major_base=A	major_cov=8/9	major_frequency=5.862e-01	minor_base=G	minor_cov=3/9	new_cov=8/9	polymorphism_frequency=5.862e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=3/9	total_cov=11/18
RA	365	.	NC_000913	338069	0	A	G	bias_e_value=7.86749	bias_p_value=1.69498e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.0	fisher_strand_p_value=9.8956e-08	frequency=2.353e-01	ks_quality_p_value=1	major_base=A	major_cov=14/38	major_frequency=7.647e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.353e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=14/38	total_cov=30/39
RA	366	.	NC_000913	338656	0	G	A	bias_e_value=4199310	bias_p_value=0.904701	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.5	fisher_strand_p_value=0.665438	frequency=4.186e-01	ks_quality_p_value=0.896413	major_base=G	major_cov=25/25	major_frequency=5.814e-01	minor_base=A	minor_cov=16/20	new_cov=16/20	polymorphism_frequency=4.186e-01	polymorphism_score=93.3	prediction=polymorphism	ref_cov=25/25	total_cov=41/45
RA	367	.	NC_000913	340202	0	G	A	bias_e_value=3485500	bias_p_value=0.750917	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.9	fisher_strand_p_value=0.421964	frequency=3.729e-01	ks_quality_p_value=0.908511	major_base=G	major_cov=21/16	major_frequency=6.271e-01	minor_base=A	minor_cov=15/7	new_cov=15/7	polymorphism_frequency=3.729e-01	polymorphism_score=53.2	prediction=polymorphism	ref_cov=21/16	total_cov=37/23
RA	368	.	NC_000913	340248	0	G	A	bias_e_value=3326030	bias_p_value=0.716562	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.6	fisher_strand_p_value=0.423964	frequency=3.651e-01	ks_quality_p_value=0.823576	major_base=G	major_cov=23/17	major_frequency=6.349e-01	minor_base=A	minor_cov=16/7	new_cov=16/7	polymorphism_frequency=3.651e-01	polymorphism_score=61.9	prediction=polymorphism	ref_cov=23/17	total_cov=41/24
RA	369	.	NC_000913	343523	0	G	A	bias_e_value=2298000	bias_p_value=0.495083	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.1	fisher_strand_p_value=0.183788	frequency=5.854e-01	ks_quality_p_value=0.99988	major_base=A	major_cov=5/19	major_frequency=5.854e-01	minor_base=G	minor_cov=7/10	new_cov=5/19	polymorphism_frequency=5.854e-01	polymorphism_score=42.1	prediction=polymorphism	ref_cov=7/10	total_cov=12/29
RA	370	.	NC_000913	349013	0	G	A	bias_e_value=1616530	bias_p_value=0.348265	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.8	fisher_strand_p_value=1	frequency=4.574e-01	ks_quality_p_value=0.107954	major_base=G	major_cov=31/20	major_frequency=5.426e-01	minor_base=A	minor_cov=26/17	new_cov=26/17	polymorphism_frequency=4.574e-01	polymorphism_score=123.8	prediction=polymorphism	ref_cov=31/20	total_cov=58/37
RA	371	.	NC_000913	358484	0	G	A	bias_e_value=230117	bias_p_value=0.0495765	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.4	fisher_strand_p_value=0.0659285	frequency=4.595e-01	ks_quality_p_value=0.130684	major_base=G	major_cov=23/17	major_frequency=5.405e-01	minor_base=A	minor_cov=12/22	new_cov=12/22	polymorphism_frequency=4.595e-01	polymorphism_score=92.1	prediction=polymorphism	ref_cov=23/17	total_cov=35/40
RA	372	.	NC_000913	358962	0	G	A	bias_e_value=144641	bias_p_value=0.0311616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.0	fisher_strand_p_value=0.068721	frequency=4.074e-01	ks_quality_p_value=0.0718527	major_base=G	major_cov=23/25	major_frequency=5.926e-01	minor_base=A	minor_cov=23/10	new_cov=23/10	polymorphism_frequency=4.074e-01	polymorphism_score=84.9	prediction=polymorphism	ref_cov=23/25	total_cov=46/37
RA	373	.	NC_000913	362730	0	G	A	bias_e_value=4636100	bias_p_value=0.998805	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.3	fisher_strand_p_value=1	frequency=4.722e-01	ks_quality_p_value=0.951508	major_base=G	major_cov=9/10	major_frequency=5.278e-01	minor_base=A	minor_cov=8/9	new_cov=8/9	polymorphism_frequency=4.722e-01	polymorphism_score=40.9	prediction=polymorphism	ref_cov=9/10	total_cov=17/19
RA	374	.	NC_000913	365307	0	G	A	bias_e_value=3532190	bias_p_value=0.760977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.2	fisher_strand_p_value=0.529189	frequency=4.348e-01	ks_quality_p_value=0.744544	major_base=G	major_cov=22/30	major_frequency=5.652e-01	minor_base=A	minor_cov=20/20	new_cov=20/20	polymorphism_frequency=4.348e-01	polymorphism_score=105.5	prediction=polymorphism	ref_cov=22/30	total_cov=42/50
RA	375	.	NC_000913	366212	0	G	.	bias_e_value=4449020	bias_p_value=0.958499	consensus_score=134.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.726094	major_base=.	major_cov=17/15	major_frequency=9.697e-01	minor_base=G	minor_cov=1/0	new_cov=17/15	polymorphism_frequency=9.697e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/0	total_cov=18/15
RA	376	.	NC_000913	367573	0	G	A	bias_e_value=2799230	bias_p_value=0.603067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.0	fisher_strand_p_value=0.451589	frequency=6.119e-01	ks_quality_p_value=0.564043	major_base=A	major_cov=16/25	major_frequency=6.119e-01	minor_base=G	minor_cov=13/13	new_cov=16/25	polymorphism_frequency=6.119e-01	polymorphism_score=68.2	prediction=polymorphism	ref_cov=13/13	total_cov=30/38
RA	377	.	NC_000913	367812	0	G	A	bias_e_value=4640140	bias_p_value=0.999674	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=1	frequency=4.600e-01	ks_quality_p_value=0.974564	major_base=G	major_cov=16/11	major_frequency=5.400e-01	minor_base=A	minor_cov=13/10	new_cov=13/10	polymorphism_frequency=4.600e-01	polymorphism_score=51.2	prediction=polymorphism	ref_cov=16/11	total_cov=31/21
RA	378	.	NC_000913	377402	0	G	A	bias_e_value=2689400	bias_p_value=0.579406	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.7	fisher_strand_p_value=1	frequency=2.581e-01	ks_quality_p_value=0.237833	major_base=G	major_cov=10/13	major_frequency=7.419e-01	minor_base=A	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.581e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=10/13	total_cov=14/17
RA	379	.	NC_000913	377407	0	C	T	bias_e_value=4091960	bias_p_value=0.881573	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.5	fisher_strand_p_value=1	frequency=2.581e-01	ks_quality_p_value=0.554654	major_base=C	major_cov=10/13	major_frequency=7.419e-01	minor_base=T	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.581e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=10/13	total_cov=14/17
RA	380	.	NC_000913	377423	0	G	T	bias_e_value=2975120	bias_p_value=0.640962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=0.402858	frequency=2.414e-01	ks_quality_p_value=0.703915	major_base=G	major_cov=8/14	major_frequency=7.586e-01	minor_base=T	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.414e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=8/14	total_cov=12/17
RA	381	.	NC_000913	377425	0	C	T	bias_e_value=3268960	bias_p_value=0.704267	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.5	fisher_strand_p_value=0.418357	frequency=2.500e-01	ks_quality_p_value=0.807118	major_base=C	major_cov=8/13	major_frequency=7.500e-01	minor_base=T	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.500e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=8/13	total_cov=12/17
RA	382	.	NC_000913	390087	0	G	A	consensus_score=74.1	frequency=1	major_base=A	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	383	.	NC_000913	466148	0	G	A	consensus_score=57.6	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	384	.	NC_000913	469271	0	G	A	consensus_score=119.5	frequency=1	major_base=A	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	385	.	NC_000913	480295	0	G	A	consensus_score=48.3	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	386	.	NC_000913	480296	0	G	A	consensus_score=49.7	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	387	.	NC_000913	502232	0	G	A	consensus_score=107.6	frequency=1	major_base=A	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	388	.	NC_000913	662269	0	C	T	consensus_score=66.3	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	389	.	NC_000913	696470	0	C	T	consensus_score=65.9	frequency=1	major_base=T	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	390	.	NC_000913	784677	0	G	A	consensus_score=85.6	frequency=1	major_base=A	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	391	.	NC_000913	881531	0	A	T	consensus_score=105.2	frequency=1	major_base=T	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	392	.	NC_000913	1015891	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=74.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/13	major_frequency=9.583e-01	minor_base=G	minor_cov=0/1	new_cov=10/13	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/14
RA	393	.	NC_000913	1037292	0	G	T	consensus_score=108.2	frequency=1	major_base=T	major_cov=9/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/23
RA	394	.	NC_000913	1137212	0	C	T	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=76.4	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/15	major_frequency=9.583e-01	minor_base=G	minor_cov=1/0	new_cov=8/15	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	395	.	NC_000913	1138130	0	C	T	consensus_score=57.3	frequency=1	major_base=T	major_cov=15/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/4
RA	396	.	NC_000913	1147196	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=45.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/10	major_frequency=9.412e-01	minor_base=G	minor_cov=0/1	new_cov=6/10	polymorphism_frequency=9.412e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	397	.	NC_000913	1156913	0	G	A	bias_e_value=4641240	bias_p_value=0.999912	consensus_score=75.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986755	major_base=A	major_cov=12/12	major_frequency=9.600e-01	minor_base=C	minor_cov=1/0	new_cov=12/12	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	398	.	NC_000913	1169836	0	A	G	consensus_score=82.1	frequency=1	major_base=G	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	399	.	NC_000913	1174883	0	C	T	consensus_score=68.9	frequency=1	major_base=T	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	400	.	NC_000913	1175517	0	A	G	consensus_score=59.0	frequency=1	major_base=G	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	401	.	NC_000913	1188861	0	C	T	consensus_score=76.8	frequency=1	major_base=T	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	402	.	NC_000913	1189980	0	A	G	consensus_score=30.2	frequency=1	major_base=G	major_cov=7/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/3
RA	403	.	NC_000913	1191644	0	C	T	bias_e_value=3808530	bias_p_value=0.820511	consensus_score=82.9	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/12	major_frequency=9.643e-01	minor_base=G	minor_cov=0/1	new_cov=15/12	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	404	.	NC_000913	1197637	0	C	T	consensus_score=29.4	frequency=1	major_base=T	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	405	.	NC_000913	1235755	0	C	T	bias_e_value=3202630	bias_p_value=0.689976	consensus_score=51.5	fisher_strand_p_value=0.333333	frequency=1	ks_quality_p_value=0.974195	major_base=T	major_cov=5/12	major_frequency=9.444e-01	minor_base=G	minor_cov=1/0	new_cov=5/12	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/12
RA	406	.	NC_000913	1239343	0	C	T	consensus_score=62.0	frequency=1	major_base=T	major_cov=14/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/5
RA	407	.	NC_000913	1250264	0	C	T	consensus_score=73.6	frequency=1	major_base=T	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	408	.	NC_000913	1257135	0	C	T	consensus_score=56.1	frequency=1	major_base=T	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	409	.	NC_000913	1268367	0	C	T	consensus_score=48.4	frequency=1	major_base=T	major_cov=11/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/4
RA	410	.	NC_000913	1269702	0	C	T	consensus_score=56.6	frequency=1	major_base=T	major_cov=13/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/7
RA	411	.	NC_000913	1282627	0	C	T	bias_e_value=351218	bias_p_value=0.0756666	consensus_score=42.4	fisher_strand_p_value=0.0144479	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=4/12	major_frequency=8.000e-01	minor_base=C	minor_cov=4/0	new_cov=4/12	polymorphism_frequency=8.000e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=4/0	total_cov=8/12
RA	412	.	NC_000913	1290669	0	G	A	consensus_score=36.4	frequency=1	major_base=A	major_cov=9/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/4
RA	413	.	NC_000913	1297496	0	G	A	consensus_score=47.7	frequency=1	major_base=A	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	414	.	NC_000913	1301750	0	C	T	consensus_score=76.6	frequency=1	major_base=T	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	415	.	NC_000913	1301992	0	A	T	consensus_score=73.7	frequency=1	major_base=T	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	416	.	NC_000913	1306710	0	C	T	consensus_score=13.9	frequency=1	major_base=T	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	417	.	NC_000913	1306736	0	T	G	consensus_score=19.1	frequency=1	major_base=G	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	418	.	NC_000913	1317613	0	C	T	consensus_score=47.6	frequency=1	major_base=T	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	419	.	NC_000913	1321672	0	C	T	consensus_score=90.7	frequency=1	major_base=T	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	420	.	NC_000913	1322759	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=45.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/7	major_frequency=9.375e-01	minor_base=T	minor_cov=1/0	new_cov=8/7	polymorphism_frequency=9.375e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	421	.	NC_000913	1335123	0	C	T	consensus_score=46.7	frequency=1	major_base=T	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	422	.	NC_000913	1336353	0	C	T	consensus_score=107.3	frequency=1	major_base=T	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	423	.	NC_000913	1337394	0	A	G	bias_e_value=3644910	bias_p_value=0.785262	consensus_score=60.8	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=7/11	major_frequency=9.474e-01	minor_base=A	minor_cov=1/0	new_cov=7/11	polymorphism_frequency=9.474e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/0	total_cov=8/11
RA	424	.	NC_000913	1358859	0	T	C	consensus_score=62.8	frequency=1	major_base=C	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	425	.	NC_000913	1384652	0	A	G	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=104.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997704	major_base=G	major_cov=12/17	major_frequency=9.667e-01	minor_base=T	minor_cov=0/1	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	426	.	NC_000913	1387908	0	C	T	bias_e_value=3872630	bias_p_value=0.834322	consensus_score=94.3	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	427	.	NC_000913	1395566	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=44.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/6	major_frequency=9.333e-01	minor_base=G	minor_cov=1/0	new_cov=8/6	polymorphism_frequency=9.333e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	428	.	NC_000913	1399069	0	C	T	consensus_score=48.4	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	429	.	NC_000913	1401893	0	G	A	consensus_score=71.7	frequency=1	major_base=A	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	430	.	NC_000913	1405569	0	C	T	consensus_score=14.6	frequency=1	major_base=T	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	431	.	NC_000913	1418807	0	C	T	consensus_score=59.5	frequency=1	major_base=T	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	432	.	NC_000913	1419414	0	C	T	consensus_score=22.1	frequency=1	major_base=T	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	433	.	NC_000913	1428107	0	C	T	bias_e_value=4582180	bias_p_value=0.987186	consensus_score=69.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.844245	major_base=T	major_cov=14/13	major_frequency=9.643e-01	minor_base=C	minor_cov=0/1	new_cov=14/13	polymorphism_frequency=9.643e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=14/14
RA	434	.	NC_000913	1430310	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=95.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/15	major_frequency=9.677e-01	minor_base=A	minor_cov=1/0	new_cov=15/15	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	435	.	NC_000913	1441765	0	C	T	consensus_score=56.2	frequency=1	major_base=T	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	436	.	NC_000913	1453992	0	G	A	consensus_score=47.6	frequency=1	major_base=A	major_cov=12/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/4
RA	437	.	NC_000913	1460345	0	C	T	consensus_score=99.2	frequency=1	major_base=T	major_cov=21/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/9
RA	438	.	NC_000913	1491105	0	C	T	consensus_score=47.8	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	439	.	NC_000913	1501974	0	C	T	consensus_score=33.3	frequency=1	major_base=T	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	440	.	NC_000913	1514985	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=32.4	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/9	major_frequency=9.333e-01	minor_base=G	minor_cov=1/0	new_cov=5/9	polymorphism_frequency=9.333e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	441	.	NC_000913	1520526	0	C	T	consensus_score=38.0	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	442	.	NC_000913	1531318	0	C	T	bias_e_value=3331830	bias_p_value=0.717811	consensus_score=47.7	fisher_strand_p_value=0.352941	frequency=1	ks_quality_p_value=0.992674	major_base=T	major_cov=11/5	major_frequency=9.412e-01	minor_base=G	minor_cov=0/1	new_cov=11/5	polymorphism_frequency=9.412e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	443	.	NC_000913	1534321	0	C	T	consensus_score=33.1	frequency=1	major_base=T	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	444	.	NC_000913	1536304	0	C	T	bias_e_value=3793610	bias_p_value=0.817297	consensus_score=84.0	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.996928	major_base=T	major_cov=14/11	major_frequency=9.615e-01	minor_base=G	minor_cov=0/1	new_cov=14/11	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	445	.	NC_000913	1587323	0	C	T	consensus_score=20.4	frequency=1	major_base=T	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	446	.	NC_000913	1597364	0	T	C	consensus_score=73.1	frequency=1	major_base=C	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	447	.	NC_000913	1626475	0	C	T	consensus_score=13.6	frequency=1	major_base=T	major_cov=5/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/1
RA	448	.	NC_000913	1643679	0	A	T	consensus_score=64.5	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	449	.	NC_000913	1652331	0	T	C	consensus_score=47.8	frequency=1	major_base=C	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	450	.	NC_000913	1715661	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=48.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/9	major_frequency=9.375e-01	minor_base=G	minor_cov=0/1	new_cov=6/9	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	451	.	NC_000913	1738631	0	T	C	consensus_score=84.2	frequency=1	major_base=C	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	452	.	NC_000913	1743164	0	C	T	consensus_score=69.4	frequency=1	major_base=T	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	453	.	NC_000913	1776100	0	G	A	consensus_score=57.3	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	454	.	NC_000913	1786965	0	C	T	bias_e_value=3841560	bias_p_value=0.827628	consensus_score=47.5	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/10	major_frequency=9.000e-01	minor_base=G	minor_cov=2/0	new_cov=8/10	polymorphism_frequency=9.000e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	455	.	NC_000913	1790949	0	C	T	consensus_score=80.5	frequency=1	major_base=T	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	456	.	NC_000913	1791057	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=79.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/13	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=11/13	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	457	.	NC_000913	1795562	0	C	T	consensus_score=73.8	frequency=1	major_base=T	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	458	.	NC_000913	1798171	0	C	T	bias_e_value=3607140	bias_p_value=0.777125	consensus_score=46.7	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/6	major_frequency=9.412e-01	minor_base=C	minor_cov=0/1	new_cov=10/6	polymorphism_frequency=9.412e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=11/7
RA	459	.	NC_000913	1812346	0	C	T	consensus_score=55.7	frequency=1	major_base=T	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	460	.	NC_000913	1828654	0	C	T	bias_e_value=1642960	bias_p_value=0.353961	consensus_score=52.0	fisher_strand_p_value=0.110526	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/5	major_frequency=9.000e-01	minor_base=C	minor_cov=0/2	new_cov=13/5	polymorphism_frequency=9.000e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/2	total_cov=13/7
RA	461	.	NC_000913	1844146	0	C	T	bias_e_value=4641270	bias_p_value=0.999919	consensus_score=33.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987261	major_base=T	major_cov=3/9	major_frequency=9.231e-01	minor_base=C	minor_cov=0/1	new_cov=3/9	polymorphism_frequency=9.231e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=3/10
RA	462	.	NC_000913	1847969	0	C	T	bias_e_value=3709480	bias_p_value=0.799172	consensus_score=48.8	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/6	major_frequency=9.375e-01	minor_base=G	minor_cov=0/1	new_cov=9/6	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	463	.	NC_000913	1853057	0	C	T	consensus_score=54.3	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	464	.	NC_000913	1853977	0	C	T	consensus_score=44.2	frequency=1	major_base=T	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	465	.	NC_000913	1866420	0	C	T	consensus_score=15.3	frequency=1	major_base=T	major_cov=1/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/7
RA	466	.	NC_000913	1876099	0	C	T	consensus_score=64.6	frequency=1	major_base=T	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	467	.	NC_000913	1878855	0	C	T	consensus_score=13.6	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	468	.	NC_000913	1881623	0	C	T	consensus_score=41.5	frequency=1	major_base=T	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	469	.	NC_000913	1894839	0	T	C	consensus_score=63.9	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	470	.	NC_000913	1906796	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=71.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/13	major_frequency=9.583e-01	minor_base=G	minor_cov=0/1	new_cov=10/13	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/14
RA	471	.	NC_000913	1940095	0	C	T	consensus_score=83.6	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	472	.	NC_000913	1948824	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=82.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/14	major_frequency=9.667e-01	minor_base=C	minor_cov=1/0	new_cov=15/14	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=16/14
RA	473	.	NC_000913	1955010	0	G	A	consensus_score=44.9	frequency=1	major_base=A	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	474	.	NC_000913	1969982	0	C	T	consensus_score=66.7	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	475	.	NC_000913	1994637	0	A	G	consensus_score=64.8	frequency=1	major_base=G	major_cov=6/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/12
RA	476	.	NC_000913	2033271	0	C	T	consensus_score=95.8	frequency=1	major_base=T	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	477	.	NC_000913	2040289	0	C	T	consensus_score=67.6	frequency=1	major_base=T	major_cov=14/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/7
RA	478	.	NC_000913	2040433	0	C	A	consensus_score=106.3	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	479	.	NC_000913	2041411	0	G	A	consensus_score=55.0	frequency=1	major_base=A	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	480	.	NC_000913	2046506	0	G	T	consensus_score=79.6	frequency=1	major_base=T	major_cov=17/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/9
RA	481	.	NC_000913	2064246	0	C	T	consensus_score=65.0	frequency=1	major_base=T	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	482	.	NC_000913	2064616	0	C	T	consensus_score=69.0	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	483	.	NC_000913	2080405	0	C	T	consensus_score=43.0	frequency=1	major_base=T	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	484	.	NC_000913	2082863	0	C	T	consensus_score=91.3	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	485	.	NC_000913	2083929	0	C	T	bias_e_value=4641610	bias_p_value=0.999991	consensus_score=67.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99568	major_base=T	major_cov=9/12	major_frequency=9.545e-01	minor_base=C	minor_cov=0/1	new_cov=9/12	polymorphism_frequency=9.545e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=9/13
RA	486	.	NC_000913	2084330	0	C	T	consensus_score=43.9	frequency=1	major_base=T	major_cov=7/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/7
RA	487	.	NC_000913	2085319	0	G	A	consensus_score=25.6	frequency=1	major_base=A	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	488	.	NC_000913	2086634	0	G	A	bias_e_value=3781140	bias_p_value=0.81461	consensus_score=68.2	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=0.996383	major_base=A	major_cov=10/13	major_frequency=9.583e-01	minor_base=G	minor_cov=1/0	new_cov=10/13	polymorphism_frequency=9.583e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=11/13
RA	489	.	NC_000913	2103891	0	G	A	consensus_score=30.4	frequency=1	major_base=A	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	490	.	NC_000913	2111259	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=104.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=13/10	major_frequency=9.583e-01	minor_base=G	minor_cov=1/0	new_cov=13/10	polymorphism_frequency=9.583e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=14/10
RA	491	.	NC_000913	2122908	0	G	A	consensus_score=75.1	frequency=1	major_base=A	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	492	.	NC_000913	2134498	0	G	A	consensus_score=71.9	frequency=1	major_base=A	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	493	.	NC_000913	2137543	0	G	A	bias_e_value=3841560	bias_p_value=0.827628	consensus_score=57.6	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/10	major_frequency=9.474e-01	minor_base=C	minor_cov=1/0	new_cov=8/10	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	494	.	NC_000913	2173363	0	C	.	bias_e_value=708441	bias_p_value=0.152627	consensus_score=77.5	fisher_strand_p_value=0.177866	frequency=1	ks_quality_p_value=0.197269	major_base=.	major_cov=13/8	major_frequency=9.130e-01	minor_base=C	minor_cov=0/2	new_cov=13/8	polymorphism_frequency=9.130e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=0/2	total_cov=13/10
RA	495	.	NC_000913	2173364	0	C	.	bias_e_value=1723550	bias_p_value=0.371322	consensus_score=78.4	fisher_strand_p_value=0.177866	frequency=1	ks_quality_p_value=0.666445	major_base=.	major_cov=13/8	major_frequency=9.130e-01	minor_base=C	minor_cov=0/2	new_cov=13/8	polymorphism_frequency=9.130e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=0/2	total_cov=13/10
RA	496	.	NC_000913	2173448	0	C	T	consensus_score=74.6	frequency=1	major_base=T	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	497	.	NC_000913	2188087	0	T	C	bias_e_value=4598570	bias_p_value=0.990718	consensus_score=18.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.866878	major_base=C	major_cov=3/4	major_frequency=8.750e-01	minor_base=T	minor_cov=1/0	new_cov=3/4	polymorphism_frequency=8.750e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=4/4
RA	498	.	NC_000913	2304537	0	A	G	bias_e_value=4560320	bias_p_value=0.982477	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.7	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.818731	major_base=A	major_cov=2/3	major_frequency=5.000e-01	minor_base=G	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=5.000e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=2/3	total_cov=5/5
RA	499	.	NC_000913	2329209	0	A	G	consensus_score=107.5	frequency=1	major_base=G	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	500	.	NC_000913	2339162	0	C	T	consensus_score=62.8	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	501	.	NC_000913	2384808	0	C	T	consensus_score=49.5	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	502	.	NC_000913	2410419	0	G	A	consensus_score=71.2	frequency=1	major_base=A	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	503	.	NC_000913	2484827	0	C	T	consensus_score=81.7	frequency=1	major_base=T	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	504	.	NC_000913	2510609	0	C	T	bias_e_value=2873810	bias_p_value=0.619135	consensus_score=41.6	fisher_strand_p_value=0.266667	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/3	major_frequency=9.333e-01	minor_base=G	minor_cov=0/1	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/4
RA	505	.	NC_000913	2587112	0	C	T	consensus_score=74.1	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	506	.	NC_000913	2732992	0	G	A	consensus_score=119.2	frequency=1	major_base=A	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	507	.	NC_000913	2789286	0	G	A	consensus_score=102.0	frequency=1	major_base=A	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	508	.	NC_000913	2804133	0	C	T	consensus_score=100.5	frequency=1	major_base=T	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	509	.	NC_000913	2814459	0	A	.	consensus_score=117.2	frequency=1	major_base=.	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	510	.	NC_000913	2814461	0	C	T	consensus_score=80.9	frequency=1	major_base=T	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	511	.	NC_000913	2817197	0	G	A	consensus_score=45.1	frequency=1	major_base=A	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	512	.	NC_000913	2823288	0	C	T	consensus_score=88.8	frequency=1	major_base=T	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	513	.	NC_000913	2866744	0	G	A	bias_e_value=2032250	bias_p_value=0.437829	consensus_score=96.1	fisher_strand_p_value=0.151724	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/18	major_frequency=9.333e-01	minor_base=C	minor_cov=2/0	new_cov=10/18	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	514	.	NC_000913	2867454	0	T	A	consensus_score=53.5	frequency=1	major_base=A	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	515	.	NC_000913	2871153	0	T	G	consensus_score=111.3	frequency=1	major_base=G	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	516	.	NC_000913	2926543	0	C	T	consensus_score=72.6	frequency=1	major_base=T	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	517	.	NC_000913	2926544	0	C	T	consensus_score=75.5	frequency=1	major_base=T	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	518	.	NC_000913	2926772	0	C	A	consensus_score=64.1	frequency=1	major_base=A	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	519	.	NC_000913	3009566	0	G	A	consensus_score=95.5	frequency=1	major_base=A	major_cov=9/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/21
RA	520	.	NC_000913	3028546	0	G	A	consensus_score=74.1	frequency=1	major_base=A	major_cov=14/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	521	.	NC_000913	3050472	0	G	A	consensus_score=128.1	frequency=1	major_base=A	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	522	.	NC_000913	3061916	0	C	T	bias_e_value=3898800	bias_p_value=0.83996	consensus_score=129.7	fisher_strand_p_value=0.490587	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/21	major_frequency=9.535e-01	minor_base=G	minor_cov=0/2	new_cov=20/21	polymorphism_frequency=9.535e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	523	.	NC_000913	3065449	0	G	A	bias_e_value=3695930	bias_p_value=0.796253	consensus_score=100.3	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.991968	major_base=A	major_cov=18/13	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=18/13	polymorphism_frequency=9.688e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	524	.	NC_000913	3065861	0	G	A	bias_e_value=3816980	bias_p_value=0.822332	consensus_score=148.2	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/24	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	525	.	NC_000913	3089260	0	T	C	consensus_score=120.0	frequency=1	major_base=C	major_cov=13/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/22
RA	526	.	NC_000913	3090968	0	G	A	consensus_score=130.5	frequency=1	major_base=A	major_cov=16/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	527	.	NC_000913	3104887	0	G	A	consensus_score=105.9	frequency=1	major_base=A	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	528	.	NC_000913	3120786	0	G	A	consensus_score=70.9	frequency=1	major_base=A	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	529	.	NC_000913	3121033	0	T	C	consensus_score=89.9	frequency=1	major_base=C	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	530	.	NC_000913	3127981	0	G	A	consensus_score=133.9	frequency=1	major_base=A	major_cov=17/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/23
RA	531	.	NC_000913	3130161	0	G	A	consensus_score=80.8	frequency=1	major_base=A	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	532	.	NC_000913	3132077	0	G	A	consensus_score=90.2	frequency=1	major_base=A	major_cov=17/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/11
RA	533	.	NC_000913	3133175	0	G	A	bias_e_value=3545490	bias_p_value=0.763843	consensus_score=79.2	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=0.974685	major_base=A	major_cov=16/10	major_frequency=9.630e-01	minor_base=T	minor_cov=0/1	new_cov=16/10	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	534	.	NC_000913	3134263	0	G	A	consensus_score=106.7	frequency=1	major_base=A	major_cov=23/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/11
RA	535	.	NC_000913	3145944	0	G	A	consensus_score=105.5	frequency=1	major_base=A	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	536	.	NC_000913	3150316	0	G	A	consensus_score=107.8	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	537	.	NC_000913	3162216	0	G	A	bias_e_value=4641610	bias_p_value=0.999991	consensus_score=64.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99568	major_base=A	major_cov=10/11	major_frequency=9.545e-01	minor_base=T	minor_cov=0/1	new_cov=10/11	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	538	.	NC_000913	3176625	0	G	A	bias_e_value=3640680	bias_p_value=0.78435	consensus_score=170.1	fisher_strand_p_value=0.42	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/29	major_frequency=9.800e-01	minor_base=C	minor_cov=1/0	new_cov=20/29	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	539	.	NC_000913	3179383	0	G	A	consensus_score=165.0	frequency=1	major_base=A	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	540	.	NC_000913	3186297	0	G	A	consensus_score=21.5	frequency=1	major_base=A	major_cov=7/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/3
RA	541	.	NC_000913	3193351	0	G	A	consensus_score=84.4	frequency=1	major_base=A	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	542	.	NC_000913	3204617	0	G	A	consensus_score=113.5	frequency=1	major_base=A	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	543	.	NC_000913	3207549	0	G	.	consensus_score=190.0	frequency=1	major_base=.	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	544	.	NC_000913	3219128	0	G	A	consensus_score=78.4	frequency=1	major_base=A	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	545	.	NC_000913	3224895	0	C	T	bias_e_value=4641050	bias_p_value=0.999871	consensus_score=147.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983968	major_base=T	major_cov=25/19	major_frequency=9.778e-01	minor_base=A	minor_cov=1/0	new_cov=25/19	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	546	.	NC_000913	3227339	0	C	T	bias_e_value=3137690	bias_p_value=0.675985	consensus_score=41.0	fisher_strand_p_value=0.3125	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/4	major_frequency=9.375e-01	minor_base=C	minor_cov=0/1	new_cov=11/4	polymorphism_frequency=9.375e-01	polymorphism_score=-6.9	prediction=consensus	ref_cov=0/1	total_cov=11/5
RA	547	.	NC_000913	3240423	0	C	T	consensus_score=122.1	frequency=1	major_base=T	major_cov=18/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	548	.	NC_000913	3256157	0	C	T	consensus_score=110.1	frequency=1	major_base=T	major_cov=13/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/20
RA	549	.	NC_000913	3259283	0	G	A	consensus_score=121.0	frequency=1	major_base=A	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	550	.	NC_000913	3270497	0	C	T	consensus_score=60.0	frequency=1	major_base=T	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	551	.	NC_000913	3275902	0	A	T	bias_e_value=3258890	bias_p_value=0.702097	consensus_score=69.6	fisher_strand_p_value=0.347826	frequency=1	ks_quality_p_value=0.965052	major_base=T	major_cov=7/15	major_frequency=9.565e-01	minor_base=G	minor_cov=1/0	new_cov=7/15	polymorphism_frequency=9.565e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	552	.	NC_000913	3292312	0	C	T	bias_e_value=3607140	bias_p_value=0.777125	consensus_score=112.2	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/13	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=20/13	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/14
RA	553	.	NC_000913	3304647	0	T	C	consensus_score=146.2	frequency=1	major_base=C	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	554	.	NC_000913	3329743	0	G	T	bias_e_value=4640360	bias_p_value=0.999721	consensus_score=87.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.976472	major_base=T	major_cov=11/16	major_frequency=9.643e-01	minor_base=G	minor_cov=0/1	new_cov=11/16	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=11/17
RA	555	.	NC_000913	3388041	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=168.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99915	major_base=G	major_cov=24/24	major_frequency=9.796e-01	minor_base=T	minor_cov=0/1	new_cov=24/24	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/25
RA	556	.	NC_000913	3413696	0	T	C	consensus_score=120.9	frequency=1	major_base=C	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	557	.	NC_000913	3506393	0	T	C	consensus_score=125.7	frequency=1	major_base=C	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	558	.	NC_000913	3518501	0	C	T	consensus_score=99.5	frequency=1	major_base=T	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	559	.	NC_000913	3524184	0	C	T	consensus_score=182.6	frequency=1	major_base=T	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	560	.	NC_000913	3536038	0	C	A	bias_e_value=3901800	bias_p_value=0.840607	consensus_score=153.3	fisher_strand_p_value=0.491497	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/24	major_frequency=9.592e-01	minor_base=G	minor_cov=0/2	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	561	.	NC_000913	3558291	0	C	T	consensus_score=50.4	frequency=1	major_base=T	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	562	.	NC_000913	3559621	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=144.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/14	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=30/14	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/14
RA	563	.	NC_000913	3560119	0	A	G	bias_e_value=4636860	bias_p_value=0.998967	consensus_score=130.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.954895	major_base=G	major_cov=15/24	major_frequency=9.750e-01	minor_base=T	minor_cov=0/1	new_cov=15/24	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/25
RA	564	.	NC_000913	3560455	1	.	G	bias_e_value=3803400	bias_p_value=0.819407	consensus_score=149.8	fisher_strand_p_value=0.463415	frequency=1	ks_quality_p_value=0.998781	major_base=G	major_cov=18/22	major_frequency=9.756e-01	minor_base=.	minor_cov=1/0	new_cov=18/22	polymorphism_frequency=9.756e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=19/22
RA	565	.	NC_000913	3576313	0	A	G	consensus_score=149.0	frequency=1	major_base=G	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	566	.	NC_000913	3579050	0	G	A	bias_e_value=2564550	bias_p_value=0.552509	consensus_score=77.4	fisher_strand_p_value=0.224138	frequency=1	ks_quality_p_value=0.979773	major_base=A	major_cov=15/12	major_frequency=9.310e-01	minor_base=G	minor_cov=0/2	new_cov=15/12	polymorphism_frequency=9.310e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/2	total_cov=15/14
RA	567	.	NC_000913	3581316	0	G	A	consensus_score=148.0	frequency=1	major_base=A	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	568	.	NC_000913	3581850	0	G	A	consensus_score=70.0	frequency=1	major_base=A	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	569	.	NC_000913	3585517	0	G	A	consensus_score=132.5	frequency=1	major_base=A	major_cov=15/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/25
RA	570	.	NC_000913	3587531	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=117.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/11	major_frequency=9.722e-01	minor_base=C	minor_cov=1/0	new_cov=24/11	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	571	.	NC_000913	3588787	0	G	A	consensus_score=193.4	frequency=1	major_base=A	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	572	.	NC_000913	3589956	0	G	A	consensus_score=194.9	frequency=1	major_base=A	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	573	.	NC_000913	3590251	0	C	T	consensus_score=214.6	frequency=1	major_base=T	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	574	.	NC_000913	3618836	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=151.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/25	major_frequency=9.787e-01	minor_base=G	minor_cov=0/1	new_cov=21/25	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/26
RA	575	.	NC_000913	3621090	0	C	T	bias_e_value=3872630	bias_p_value=0.834322	consensus_score=102.3	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/30	major_frequency=9.828e-01	minor_base=C	minor_cov=1/0	new_cov=27/30	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=29/30
RA	576	.	NC_000913	3633749	0	C	T	consensus_score=54.0	frequency=1	major_base=T	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	577	.	NC_000913	3647677	0	C	T	consensus_score=127.3	frequency=1	major_base=T	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	578	.	NC_000913	3684443	0	C	T	bias_e_value=4207900	bias_p_value=0.906553	consensus_score=161.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.600112	major_base=T	major_cov=30/17	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=30/17	polymorphism_frequency=9.792e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=31/17
RA	579	.	NC_000913	3707947	0	C	A	consensus_score=85.3	frequency=1	major_base=A	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	580	.	NC_000913	3713979	0	C	T	bias_e_value=1750370	bias_p_value=0.3771	consensus_score=82.6	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.251851	major_base=T	major_cov=12/14	major_frequency=9.630e-01	minor_base=C	minor_cov=1/0	new_cov=12/14	polymorphism_frequency=9.630e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=13/15
RA	581	.	NC_000913	3725176	0	T	G	consensus_score=91.8	frequency=1	major_base=G	major_cov=12/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/16
RA	582	.	NC_000913	3744369	0	C	T	consensus_score=65.5	frequency=1	major_base=T	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	583	.	NC_000913	3781049	0	C	T	bias_e_value=3882580	bias_p_value=0.836465	consensus_score=105.6	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/16	major_frequency=9.444e-01	minor_base=C	minor_cov=0/2	new_cov=18/16	polymorphism_frequency=9.444e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/2	total_cov=18/19
RA	584	.	NC_000913	3803453	0	C	T	consensus_score=101.0	frequency=1	major_base=T	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	585	.	NC_000913	3803945	0	C	T	consensus_score=79.7	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	586	.	NC_000913	3809942	0	C	T	consensus_score=173.4	frequency=1	major_base=T	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	587	.	NC_000913	3815883	1	.	C	bias_e_value=4641650	bias_p_value=1	consensus_score=97.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=19/11	major_frequency=9.677e-01	minor_base=.	minor_cov=1/0	new_cov=19/11	polymorphism_frequency=9.677e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=20/11
RA	588	.	NC_000913	3827026	0	C	T	bias_e_value=3596090	bias_p_value=0.774744	consensus_score=136.0	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/26	major_frequency=9.773e-01	minor_base=C	minor_cov=1/0	new_cov=17/26	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/26
RA	589	.	NC_000913	3829385	0	C	T	consensus_score=179.5	frequency=1	major_base=T	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	590	.	NC_000913	3834845	0	C	T	bias_e_value=3598630	bias_p_value=0.77529	consensus_score=129.8	fisher_strand_p_value=0.410256	frequency=1	ks_quality_p_value=0.998651	major_base=T	major_cov=15/23	major_frequency=9.744e-01	minor_base=G	minor_cov=1/0	new_cov=15/23	polymorphism_frequency=9.744e-01	polymorphism_score=-6.9	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	591	.	NC_000913	3850507	0	C	T	consensus_score=106.6	frequency=1	major_base=T	major_cov=13/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/22
RA	592	.	NC_000913	3870464	0	C	T	consensus_score=159.5	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	593	.	NC_000913	3900610	0	C	T	consensus_score=92.2	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	594	.	NC_000913	3904907	0	C	T	consensus_score=93.5	frequency=1	major_base=T	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	595	.	NC_000913	3914648	0	C	T	bias_e_value=4638970	bias_p_value=0.999421	consensus_score=92.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966177	major_base=T	major_cov=13/17	major_frequency=9.677e-01	minor_base=G	minor_cov=0/1	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	596	.	NC_000913	3926894	0	C	T	consensus_score=108.2	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	597	.	NC_000913	3927292	0	T	C	consensus_score=110.2	frequency=1	major_base=C	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	598	.	NC_000913	3937909	0	G	A	consensus_score=143.3	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	599	.	NC_000913	3937997	0	G	A	consensus_score=131.5	frequency=1	major_base=A	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	600	.	NC_000913	3938441	0	C	.	consensus_score=120.7	frequency=1	major_base=.	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	601	.	NC_000913	3941874	0	C	T	consensus_score=47.8	frequency=1	major_base=T	major_cov=16/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/5
RA	602	.	NC_000913	3946246	0	G	A	bias_e_value=4641590	bias_p_value=0.999987	consensus_score=67.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994885	major_base=A	major_cov=19/20	major_frequency=9.750e-01	minor_base=C	minor_cov=0/1	new_cov=19/20	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=19/22
RA	603	.	NC_000913	3950099	0	C	T	consensus_score=87.7	frequency=1	major_base=T	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	604	.	NC_000913	3956003	0	G	A	consensus_score=155.0	frequency=1	major_base=A	major_cov=16/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/32
RA	605	.	NC_000913	4040623	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=1	frequency=6.857e-01	ks_quality_p_value=1	major_base=A	major_cov=11/13	major_frequency=6.857e-01	minor_base=G	minor_cov=5/6	new_cov=11/13	polymorphism_frequency=6.857e-01	polymorphism_score=29.3	prediction=polymorphism	ref_cov=5/6	total_cov=16/19
RA	606	.	NC_000913	4084932	0	G	T	consensus_score=142.2	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	607	.	NC_000913	4094547	0	T	C	bias_e_value=586023	bias_p_value=0.126253	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.6	fisher_strand_p_value=0.314685	frequency=5.333e-01	ks_quality_p_value=0.087327	major_base=C	major_cov=3/5	major_frequency=5.333e-01	minor_base=T	minor_cov=5/2	new_cov=3/5	polymorphism_frequency=5.333e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=5/2	total_cov=8/7
RA	608	.	NC_000913	4139298	0	G	A	consensus_score=181.9	frequency=1	major_base=A	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	609	.	NC_000913	4160157	0	G	A	consensus_score=150.0	frequency=1	major_base=A	major_cov=16/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/29
RA	610	.	NC_000913	4171728	0	C	T	bias_e_value=4620390	bias_p_value=0.99542	consensus_score=14.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.905832	major_base=T	major_cov=5/8	major_frequency=9.286e-01	minor_base=C	minor_cov=0/1	new_cov=5/8	polymorphism_frequency=9.286e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=5/9
RA	611	.	NC_000913	4175827	0	C	T	consensus_score=127.9	frequency=1	major_base=T	major_cov=24/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/15
RA	612	.	NC_000913	4178883	0	C	T	bias_e_value=3785680	bias_p_value=0.815589	consensus_score=154.5	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=0.999114	major_base=T	major_cov=26/21	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=26/21	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	613	.	NC_000913	4179001	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=132.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/17	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=25/17	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/17
RA	614	.	NC_000913	4185777	0	C	T	bias_e_value=3594300	bias_p_value=0.774357	consensus_score=146.3	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=0.998943	major_base=T	major_cov=26/17	major_frequency=9.773e-01	minor_base=G	minor_cov=0/1	new_cov=26/17	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	615	.	NC_000913	4193177	0	C	T	consensus_score=136.9	frequency=1	major_base=T	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	616	.	NC_000913	4193707	0	A	G	bias_e_value=4641210	bias_p_value=0.999905	consensus_score=181.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986249	major_base=G	major_cov=34/16	major_frequency=9.615e-01	minor_base=T	minor_cov=1/1	new_cov=34/16	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/17
RA	617	.	NC_000913	4193820	0	C	T	bias_e_value=2900180	bias_p_value=0.624817	consensus_score=164.6	fisher_strand_p_value=0.403846	frequency=1	ks_quality_p_value=0.671028	major_base=T	major_cov=31/20	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=31/20	polymorphism_frequency=9.808e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	618	.	NC_000913	4219752	0	C	T	consensus_score=75.6	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	619	.	NC_000913	4222743	0	C	T	consensus_score=86.5	frequency=1	major_base=T	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	620	.	NC_000913	4223638	0	T	C	consensus_score=71.9	frequency=1	major_base=C	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	621	.	NC_000913	4224483	0	C	T	bias_e_value=3395330	bias_p_value=0.731491	consensus_score=148.5	fisher_strand_p_value=0.363636	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/15	major_frequency=9.773e-01	minor_base=G	minor_cov=0/1	new_cov=28/15	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/16
RA	622	.	NC_000913	4234479	0	C	T	consensus_score=158.9	frequency=1	major_base=T	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	623	.	NC_000913	4249684	0	C	T	consensus_score=108.1	frequency=1	major_base=T	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	624	.	NC_000913	4265668	0	C	T	consensus_score=110.3	frequency=1	major_base=T	major_cov=12/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/22
RA	625	.	NC_000913	4269449	0	C	T	consensus_score=43.3	frequency=1	major_base=T	major_cov=11/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/4
RA	626	.	NC_000913	4271130	0	C	T	consensus_score=190.3	frequency=1	major_base=T	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	627	.	NC_000913	4278488	0	C	T	consensus_score=38.5	frequency=1	major_base=T	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	628	.	NC_000913	4282536	0	C	T	consensus_score=53.9	frequency=1	major_base=T	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	629	.	NC_000913	4284077	0	C	T	consensus_score=97.3	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	630	.	NC_000913	4286033	0	C	T	bias_e_value=3893170	bias_p_value=0.838748	consensus_score=137.4	fisher_strand_p_value=0.488889	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/21	major_frequency=9.565e-01	minor_base=G	minor_cov=0/2	new_cov=23/21	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	631	.	NC_000913	4296187	0	C	T	consensus_score=20.2	frequency=1	major_base=T	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	632	.	NC_000913	4296300	0	C	T	consensus_score=21.6	frequency=1	major_base=T	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	633	.	NC_000913	4296380	1	.	C	consensus_score=71.3	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	634	.	NC_000913	4296380	2	.	G	consensus_score=69.2	frequency=1	major_base=G	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	635	.	NC_000913	4297469	0	C	T	consensus_score=123.5	frequency=1	major_base=T	major_cov=19/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/19
RA	636	.	NC_000913	4298199	0	C	T	consensus_score=165.5	frequency=1	major_base=T	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	637	.	NC_000913	4301071	0	C	T	bias_e_value=2873810	bias_p_value=0.619135	consensus_score=34.0	fisher_strand_p_value=0.266667	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=3/11	major_frequency=9.333e-01	minor_base=G	minor_cov=1/0	new_cov=3/11	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	638	.	NC_000913	4303755	0	C	T	bias_e_value=3862340	bias_p_value=0.832104	consensus_score=96.4	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.991435	major_base=T	major_cov=16/14	major_frequency=9.677e-01	minor_base=C	minor_cov=0/1	new_cov=16/14	polymorphism_frequency=9.677e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	639	.	NC_000913	4311337	0	C	T	consensus_score=109.4	frequency=1	major_base=T	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	640	.	NC_000913	4320079	0	C	T	consensus_score=213.5	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	641	.	NC_000913	4320785	0	C	T	consensus_score=238.9	frequency=1	major_base=T	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	642	.	NC_000913	4322605	0	C	T	consensus_score=149.1	frequency=1	major_base=T	major_cov=24/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/20
RA	643	.	NC_000913	4325644	0	C	T	consensus_score=119.2	frequency=1	major_base=T	major_cov=22/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/13
RA	644	.	NC_000913	4325837	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=125.8	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/15	major_frequency=9.750e-01	minor_base=G	minor_cov=0/1	new_cov=24/15	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	645	.	NC_000913	4332310	0	C	T	consensus_score=37.8	frequency=1	major_base=T	major_cov=12/0	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/0	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/0
RA	646	.	NC_000913	4337864	0	C	T	consensus_score=47.5	frequency=1	major_base=T	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	647	.	NC_000913	4342825	0	C	T	consensus_score=81.4	frequency=1	major_base=T	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	648	.	NC_000913	4349259	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=37.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=7/5	major_frequency=9.231e-01	minor_base=A	minor_cov=1/0	new_cov=7/5	polymorphism_frequency=9.231e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	649	.	NC_000913	4351519	0	C	T	bias_e_value=4472230	bias_p_value=0.963501	consensus_score=87.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.742279	major_base=T	major_cov=11/17	major_frequency=9.655e-01	minor_base=C	minor_cov=0/1	new_cov=11/17	polymorphism_frequency=9.655e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=11/18
RA	650	.	NC_000913	4351590	0	C	T	bias_e_value=4601520	bias_p_value=0.991354	consensus_score=86.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.871417	major_base=T	major_cov=13/17	major_frequency=9.677e-01	minor_base=C	minor_cov=0/1	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=13/19
RA	651	.	NC_000913	4359909	0	C	T	bias_e_value=4639240	bias_p_value=0.99948	consensus_score=67.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967917	major_base=T	major_cov=12/11	major_frequency=9.583e-01	minor_base=C	minor_cov=1/0	new_cov=12/11	polymorphism_frequency=9.583e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=13/11
RA	652	.	NC_000913	4364798	0	C	T	bias_e_value=2769090	bias_p_value=0.596574	consensus_score=131.9	fisher_strand_p_value=0.25	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/30	major_frequency=9.750e-01	minor_base=A	minor_cov=1/0	new_cov=9/30	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/30
RA	653	.	NC_000913	4366668	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=47.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=7/8	major_frequency=9.375e-01	minor_base=G	minor_cov=1/0	new_cov=7/8	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	654	.	NC_000913	4371401	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=148.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/22	major_frequency=9.778e-01	minor_base=A	minor_cov=1/0	new_cov=22/22	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	655	.	NC_000913	4373421	0	C	T	bias_e_value=3744460	bias_p_value=0.806707	consensus_score=126.4	fisher_strand_p_value=0.447368	frequency=1	ks_quality_p_value=0.998579	major_base=T	major_cov=21/16	major_frequency=9.737e-01	minor_base=G	minor_cov=0/1	new_cov=21/16	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	656	.	NC_000913	4380469	0	C	T	consensus_score=148.0	frequency=1	major_base=T	major_cov=25/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/17
RA	657	.	NC_000913	4388120	0	C	T	consensus_score=97.9	frequency=1	major_base=T	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	658	.	NC_000913	4389838	0	C	T	consensus_score=122.3	frequency=1	major_base=T	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	659	.	NC_000913	4401607	0	C	T	consensus_score=164.1	frequency=1	major_base=T	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	660	.	NC_000913	4403010	0	C	T	consensus_score=158.4	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	661	.	NC_000913	4407045	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=155.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/21	major_frequency=9.792e-01	minor_base=G	minor_cov=1/0	new_cov=26/21	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	662	.	NC_000913	4414625	0	C	T	bias_e_value=3824330	bias_p_value=0.823915	consensus_score=95.8	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/17	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	663	.	NC_000913	4418862	0	C	T	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=101.8	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/11	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=20/11	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/12
RA	664	.	NC_000913	4426929	0	C	T	consensus_score=80.8	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	665	.	NC_000913	4433459	0	C	T	consensus_score=107.0	frequency=1	major_base=T	major_cov=24/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/9
RA	666	.	NC_000913	4435124	0	C	T	consensus_score=97.4	frequency=1	major_base=T	major_cov=22/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/9
RA	667	.	NC_000913	4435750	0	C	T	consensus_score=116.4	frequency=1	major_base=T	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	668	.	NC_000913	4451280	0	C	T	bias_e_value=4638090	bias_p_value=0.999233	consensus_score=112.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.961095	major_base=T	major_cov=18/17	major_frequency=9.722e-01	minor_base=G	minor_cov=1/0	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	669	.	NC_000913	4457392	0	C	T	bias_e_value=3782830	bias_p_value=0.814976	consensus_score=118.9	fisher_strand_p_value=0.457143	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/15	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=19/15	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	670	.	NC_000913	4465787	0	G	A	bias_e_value=8101.53	bias_p_value=0.0017454	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.1	fisher_strand_p_value=0.000181548	frequency=4.444e-01	ks_quality_p_value=1	major_base=G	major_cov=11/4	major_frequency=5.556e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=4.444e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=11/4	total_cov=11/17
RA	671	.	NC_000913	4482901	0	C	T	consensus_score=144.4	frequency=1	major_base=T	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	672	.	NC_000913	4486869	0	T	A	bias_e_value=3316280	bias_p_value=0.714462	consensus_score=202.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.347176	major_base=A	major_cov=29/31	major_frequency=9.836e-01	minor_base=T	minor_cov=0/1	new_cov=29/31	polymorphism_frequency=9.836e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=29/32
RA	673	.	NC_000913	4487022	0	C	T	consensus_score=173.8	frequency=1	major_base=T	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	674	.	NC_000913	4489775	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=155.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/26	major_frequency=9.608e-01	minor_base=C	minor_cov=1/1	new_cov=23/26	polymorphism_frequency=9.608e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=24/28
RA	675	.	NC_000913	4494499	0	C	T	consensus_score=85.7	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	676	.	NC_000913	4501500	0	C	T	bias_e_value=3405710	bias_p_value=0.733728	consensus_score=131.5	fisher_strand_p_value=0.365854	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/14	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=26/14	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/15
RA	677	.	NC_000913	4510238	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=86.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=8/16	major_frequency=9.600e-01	minor_base=T	minor_cov=0/1	new_cov=8/16	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=8/17
RA	678	.	NC_000913	4517355	0	C	T	consensus_score=145.0	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	679	.	NC_000913	4524401	0	C	T	bias_e_value=886958	bias_p_value=0.191087	consensus_score=92.2	fisher_strand_p_value=0.047124	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/20	major_frequency=8.974e-01	minor_base=C	minor_cov=4/0	new_cov=15/20	polymorphism_frequency=8.974e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	680	.	NC_000913	4524596	0	C	T	consensus_score=87.5	frequency=1	major_base=T	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	681	.	NC_000913	4529039	0	C	T	consensus_score=114.0	frequency=1	major_base=T	major_cov=22/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/13
RA	682	.	NC_000913	4530797	0	C	T	consensus_score=126.6	frequency=1	major_base=T	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	683	.	NC_000913	4541261	0	C	T	consensus_score=95.7	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	684	.	NC_000913	4553671	0	C	T	consensus_score=171.5	frequency=1	major_base=T	major_cov=31/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/20
RA	685	.	NC_000913	4564385	0	C	T	consensus_score=175.3	frequency=1	major_base=T	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	686	.	NC_000913	4570550	0	C	T	consensus_score=103.7	frequency=1	major_base=T	major_cov=15/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/16
RA	687	.	NC_000913	4571280	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=74.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/17	major_frequency=9.583e-01	minor_base=G	minor_cov=0/1	new_cov=6/17	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/18
RA	688	.	NC_000913	4585673	0	C	T	consensus_score=176.6	frequency=1	major_base=T	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	689	.	NC_000913	4587365	0	C	T	bias_e_value=2605170	bias_p_value=0.561259	consensus_score=113.4	fisher_strand_p_value=0.228571	frequency=1	ks_quality_p_value=0.986243	major_base=T	major_cov=18/15	major_frequency=9.429e-01	minor_base=G	minor_cov=0/2	new_cov=18/15	polymorphism_frequency=9.429e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	690	.	NC_000913	4604517	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=91.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/12	major_frequency=9.655e-01	minor_base=G	minor_cov=1/0	new_cov=16/12	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	691	.	NC_000913	4630295	0	C	T	bias_e_value=3935970	bias_p_value=0.847967	consensus_score=91.6	fisher_strand_p_value=0.502016	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/17	major_frequency=9.375e-01	minor_base=G	minor_cov=0/2	new_cov=13/17	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	692	.	NC_000913	4636925	0	G	C	consensus_score=127.2	frequency=1	major_base=C	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	693	.	NC_000913	4638058	0	C	T	consensus_score=83.9	frequency=1	major_base=T	major_cov=6/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/19
RA	694	.	NC_000913	4638240	0	G	A	consensus_score=104.7	frequency=1	major_base=A	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
MC	695	.	NC_000913	257908	258682	0	0	left_inside_cov=1	left_outside_cov=64	right_inside_cov=2	right_outside_cov=3
MC	696	.	NC_000913	565829	577187	0	0	left_inside_cov=0	left_outside_cov=25	right_inside_cov=0	right_outside_cov=22
MC	697	.	NC_000913	1299499	1300697	1197	0	left_inside_cov=0	left_outside_cov=12	right_inside_cov=1	right_outside_cov=13
MC	698	.	NC_000913	1978503	1979278	0	0	left_inside_cov=0	left_outside_cov=10	right_inside_cov=0	right_outside_cov=10
MC	699	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=26	right_inside_cov=2	right_outside_cov=28
MC	700	.	NC_000913	3423880	3424406	347	168	left_inside_cov=2	left_outside_cov=3	right_inside_cov=2	right_outside_cov=3
JC	701	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=242	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=221	max_left_minus=214	max_left_plus=221	max_min_left=123	max_min_left_minus=123	max_min_left_plus=96	max_min_right=114	max_min_right_minus=113	max_min_right_plus=114	max_pos_hash_score=484	max_right=223	max_right_minus=193	max_right_plus=223	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.59	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=17
JC	702	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=39	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=238	max_left_minus=225	max_left_plus=238	max_min_left=119	max_min_left_minus=119	max_min_left_plus=108	max_min_right=121	max_min_right_minus=121	max_min_right_plus=116	max_pos_hash_score=468	max_right=234	max_right_minus=234	max_right_plus=233	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.21	new_junction_read_count=62	polymorphism_frequency=9.923e-01	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	703	.	NC_000913	273955	1	NC_000913	295085	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=3.810e-01	junction_possible_overlap_registers=242	key=NC_000913__273955__1__NC_000913__295085__-1__0____251__251__1__0	max_left=247	max_left_minus=148	max_left_plus=247	max_min_left=107	max_min_left_minus=73	max_min_left_plus=107	max_min_right=117	max_min_right_minus=103	max_min_right_plus=117	max_pos_hash_score=484	max_right=242	max_right_minus=242	max_right_plus=240	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.55	new_junction_read_count=16	polymorphism_frequency=3.810e-01	pos_hash_score=15	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=15
JC	704	.	NC_000913	273955	1	NC_000913	565828	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__273955__1__NC_000913__565828__-1__0____251__251__1__0	max_left=246	max_left_minus=246	max_left_plus=246	max_min_left=102	max_min_left_minus=102	max_min_left_plus=86	max_min_right=113	max_min_right_minus=113	max_min_right_plus=107	max_pos_hash_score=484	max_right=231	max_right_minus=214	max_right_plus=231	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	705	.	NC_000913	273955	1	NC_000913	1091176	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__273955__1__NC_000913__1091176__-1__0____251__251__1__0	max_left=238	max_left_minus=238	max_left_plus=132	max_min_left=121	max_min_left_minus=87	max_min_left_plus=121	max_min_right=119	max_min_right_minus=109	max_min_right_plus=119	max_pos_hash_score=484	max_right=244	max_right_minus=244	max_right_plus=243	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.73	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20
JC	706	.	NC_000913	275149	-1	NC_000913	295082	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=4.800e-01	junction_possible_overlap_registers=242	key=NC_000913__275149__-1__NC_000913__295082__1__0____251__251__1__0	max_left=240	max_left_minus=240	max_left_plus=230	max_min_left=117	max_min_left_minus=92	max_min_left_plus=117	max_min_right=117	max_min_right_minus=117	max_min_right_plus=99	max_pos_hash_score=484	max_right=237	max_right_minus=212	max_right_plus=237	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=24	polymorphism_frequency=4.800e-01	pos_hash_score=21	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=22
JC	707	.	NC_000913	275149	-1	NC_000913	577188	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__275149__-1__NC_000913__577188__1__0____251__251__1__0	max_left=229	max_left_minus=229	max_left_plus=226	max_min_left=117	max_min_left_minus=80	max_min_left_plus=117	max_min_right=118	max_min_right_minus=118	max_min_right_plus=110	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=243	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	708	.	NC_000913	275149	-1	NC_000913	1091173	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__275149__-1__NC_000913__1091173__1__0____251__251__1__0	max_left=240	max_left_minus=231	max_left_plus=240	max_min_left=125	max_min_left_minus=122	max_min_left_plus=125	max_min_right=102	max_min_right_minus=83	max_min_right_plus=102	max_pos_hash_score=484	max_right=246	max_right_minus=243	max_right_plus=246	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.59	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=17
JC	709	.	NC_000913	315229	1	NC_000913	1199872	-1	-2	alignment_overlap=-2	coverage_minus=8	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__315229__1__NC_000913__1199872__-1__-2__TC__251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=240	max_min_left=108	max_min_left_minus=103	max_min_left_plus=108	max_min_right=124	max_min_right_minus=108	max_min_right_plus=124	max_pos_hash_score=480	max_right=233	max_right_minus=190	max_right_plus=233	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.87	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=TC
JC	710	.	NC_000913	366180	-1	NC_000913	366274	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=4.733e-01	junction_possible_overlap_registers=242	key=NC_000913__366180__-1__NC_000913__366274__1__0____251__251__0__0	max_left=244	max_left_minus=244	max_left_plus=221	max_min_left=121	max_min_left_minus=121	max_min_left_plus=100	max_min_right=118	max_min_right_minus=118	max_min_right_plus=112	max_pos_hash_score=484	max_right=237	max_right_minus=235	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=31	polymorphism_frequency=4.733e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=31
JC	711	.	NC_000913	1094245	1	NC_000913	1199869	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1094245__1__NC_000913__1199869__1__0____251__251__1__0	max_left=246	max_left_minus=241	max_left_plus=246	max_min_left=108	max_min_left_minus=108	max_min_left_plus=84	max_min_right=117	max_min_right_minus=117	max_min_right_plus=103	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=234	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.62	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18
JC	712	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=4	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.522e-01	junction_possible_overlap_registers=226	key=NC_000913__1207790__1__NC_000913__1209603__1__16____251__251__0__0	max_left=162	max_left_minus=162	max_left_plus=117	max_min_left=104	max_min_left_minus=104	max_min_left_plus=0	max_min_right=116	max_min_right_minus=96	max_min_right_plus=116	max_pos_hash_score=452	max_right=189	max_right_minus=189	max_right_plus=116	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.22	new_junction_read_count=6	polymorphism_frequency=4.522e-01	pos_hash_score=5	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.24	side_1_overlap=16	side_1_possible_overlap_registers=242	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.30	side_2_overlap=0	side_2_possible_overlap_registers=226	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=5
JC	713	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=6.228e-01	junction_possible_overlap_registers=226	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=216	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=104	max_min_right_minus=75	max_min_right_plus=104	max_pos_hash_score=452	max_right=222	max_right_minus=75	max_right_plus=222	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.44	new_junction_read_count=12	polymorphism_frequency=6.228e-01	pos_hash_score=10	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.24	side_1_overlap=16	side_1_possible_overlap_registers=242	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.30	side_2_overlap=0	side_2_possible_overlap_registers=226	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=12
JC	714	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=9	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=209	max_left_minus=205	max_left_plus=209	max_min_left=103	max_min_left_minus=102	max_min_left_plus=103	max_min_right=96	max_min_right_minus=96	max_min_right_plus=37	max_pos_hash_score=476	max_right=243	max_right_minus=243	max_right_plus=221	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.42	new_junction_read_count=12	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	715	.	NC_000913	1399590	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1399590__1__NC_000913__2101749__1__0____251__251__0__1	max_left=222	max_left_minus=222	max_left_plus=152	max_min_left=114	max_min_left_minus=114	max_min_left_plus=108	max_min_right=117	max_min_right_minus=98	max_min_right_plus=117	max_pos_hash_score=484	max_right=232	max_right_minus=232	max_right_plus=186	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.69	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	716	.	NC_000913	1399593	-1	NC_000913	2290113	-1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1399594__-1__NC_000913__2290113__-1__1____251__251__0__1	max_left=205	max_left_minus=133	max_left_plus=205	max_min_left=95	max_min_left_minus=95	max_min_left_plus=75	max_min_right=124	max_min_right_minus=124	max_min_right_plus=45	max_pos_hash_score=482	max_right=224	max_right_minus=224	max_right_plus=199	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.42	new_junction_read_count=12	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	717	.	NC_000913	1909925	1	NC_000913	2101749	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1909924__1__NC_000913__2101749__1__1____251__251__0__1	max_left=207	max_left_minus=207	max_left_plus=173	max_min_left=102	max_min_left_minus=86	max_min_left_plus=102	max_min_right=113	max_min_right_minus=113	max_min_right_plus=78	max_pos_hash_score=482	max_right=218	max_right_minus=218	max_right_plus=196	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.52	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	718	.	NC_000913	1909928	-1	NC_000913	2290113	-1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__1909930__-1__NC_000913__2290113__-1__2____251__251__0__1	max_left=232	max_left_minus=232	max_left_plus=222	max_min_left=122	max_min_left_minus=122	max_min_left_plus=121	max_min_right=116	max_min_right_minus=116	max_min_right_plus=71	max_pos_hash_score=480	max_right=231	max_right_minus=231	max_right_plus=221	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.70	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	719	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=4	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0	max_left=238	max_left_minus=198	max_left_plus=238	max_min_left=113	max_min_left_minus=95	max_min_left_plus=113	max_min_right=83	max_min_right_minus=81	max_min_right_plus=83	max_pos_hash_score=468	max_right=199	max_right_minus=199	max_right_plus=172	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.36	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	720	.	NC_000913	1978503	1	NC_000913	4434636	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1978503__1__NC_000913__4434636__-1__0____251__251__1__0	max_left=245	max_left_minus=191	max_left_plus=245	max_min_left=122	max_min_left_minus=102	max_min_left_plus=122	max_min_right=106	max_min_right_minus=88	max_min_right_plus=106	max_pos_hash_score=484	max_right=245	max_right_minus=245	max_right_plus=216	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	721	.	NC_000913	2101749	1	NC_000913	2174359	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2101749__1__NC_000913__2174359__1__0____251__251__1__0	max_left=234	max_left_minus=80	max_left_plus=234	max_min_left=92	max_min_left_minus=80	max_min_left_plus=92	max_min_right=122	max_min_right_minus=0	max_min_right_plus=122	max_pos_hash_score=484	max_right=186	max_right_minus=170	max_right_plus=186	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.35	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=9	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	722	.	NC_000913	2174362	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2174362__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=229	max_left_minus=229	max_left_plus=227	max_min_left=111	max_min_left_minus=106	max_min_left_plus=111	max_min_right=102	max_min_right_minus=102	max_min_right_plus=92	max_pos_hash_score=484	max_right=245	max_right_minus=245	max_right_plus=235	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.86	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	723	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=15	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=223	max_left_minus=218	max_left_plus=223	max_min_left=112	max_min_left_minus=112	max_min_left_plus=86	max_min_right=116	max_min_right_minus=61	max_min_right_plus=116	max_pos_hash_score=468	max_right=240	max_right_minus=239	max_right_plus=240	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.93	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	724	.	NC_000913	3583428	1	NC_000913	4434629	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3583428__1__NC_000913__4434629__1__0____251__251__1__0	max_left=248	max_left_minus=248	max_left_plus=246	max_min_left=118	max_min_left_minus=118	max_min_left_plus=118	max_min_right=110	max_min_right_minus=89	max_min_right_plus=110	max_pos_hash_score=484	max_right=245	max_right_minus=245	max_right_plus=223	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	725	.	NC_000913	3583428	1	NC_000913	4542049	-1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__3583428__1__NC_000913__4542050__-1__1____251__251__1__0	max_left=238	max_left_minus=198	max_left_plus=238	max_min_left=117	max_min_left_minus=90	max_min_left_plus=117	max_min_right=115	max_min_right_minus=97	max_min_right_plus=115	max_pos_hash_score=482	max_right=221	max_right_minus=221	max_right_plus=219	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	726	.	NC_000913	3584195	-1	NC_000913	4542042	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3584195__-1__NC_000913__4542042__1__0____251__251__1__0	max_left=232	max_left_minus=225	max_left_plus=232	max_min_left=119	max_min_left_minus=119	max_min_left_plus=112	max_min_right=120	max_min_right_minus=120	max_min_right_plus=120	max_pos_hash_score=484	max_right=236	max_right_minus=236	max_right_plus=201	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	727	.	NC_000913	4094340	1	NC_000913	4094552	-1	-5	alignment_overlap=-5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=2.495e-01	junction_possible_overlap_registers=237	key=NC_000913__4094340__1__NC_000913__4094552__-1__-5__ACGCT__251__251__0__0	max_left=176	max_left_minus=9	max_left_plus=176	max_min_left=64	max_min_left_minus=9	max_min_left_plus=64	max_min_right=62	max_min_right_minus=0	max_min_right_plus=62	max_pos_hash_score=474	max_right=241	max_right_minus=241	max_right_plus=230	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.25	new_junction_read_count=7	polymorphism_frequency=2.495e-01	pos_hash_score=6	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=ACGCT
JC	728	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.482e-01	junction_possible_overlap_registers=233	key=NC_000913__4542682__1__NC_000913__4542987__1__9____251__251__0__0	max_left=223	max_left_minus=223	max_left_plus=152	max_min_left=78	max_min_left_minus=59	max_min_left_plus=78	max_min_right=90	max_min_right_minus=19	max_min_right_plus=90	max_pos_hash_score=466	max_right=183	max_right_minus=183	max_right_plus=164	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.18	new_junction_read_count=5	polymorphism_frequency=2.482e-01	pos_hash_score=5	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=9	side_1_possible_overlap_registers=242	side_1_read_count=19	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=5
JC	729	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.093e-01	junction_possible_overlap_registers=233	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=140	max_min_left=85	max_min_left_minus=85	max_min_left_plus=59	max_min_right=114	max_min_right_minus=7	max_min_right_plus=114	max_pos_hash_score=466	max_right=237	max_right_minus=157	max_right_plus=237	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.25	new_junction_read_count=7	polymorphism_frequency=3.093e-01	pos_hash_score=7	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=9	side_1_possible_overlap_registers=242	side_1_read_count=20	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=7
UN	730	.	NC_000913	15585	15585
UN	731	.	NC_000913	15595	16541
UN	732	.	NC_000913	16545	16545
UN	733	.	NC_000913	16549	16549
UN	734	.	NC_000913	19981	19981
UN	735	.	NC_000913	19984	19984
UN	736	.	NC_000913	19986	20340
UN	737	.	NC_000913	20342	20346
UN	738	.	NC_000913	20348	20350
UN	739	.	NC_000913	223919	223919
UN	740	.	NC_000913	223922	224577
UN	741	.	NC_000913	225097	225371
UN	742	.	NC_000913	225373	225373
UN	743	.	NC_000913	225375	225376
UN	744	.	NC_000913	225380	225380
UN	745	.	NC_000913	226714	226714
UN	746	.	NC_000913	226720	226721
UN	747	.	NC_000913	226728	226728
UN	748	.	NC_000913	226731	226731
UN	749	.	NC_000913	226733	226733
UN	750	.	NC_000913	226749	226749
UN	751	.	NC_000913	226754	226754
UN	752	.	NC_000913	227188	227189
UN	753	.	NC_000913	227191	227192
UN	754	.	NC_000913	227194	227194
UN	755	.	NC_000913	227196	228485
UN	756	.	NC_000913	257908	258683
UN	757	.	NC_000913	270747	271085
UN	758	.	NC_000913	274175	274175
UN	759	.	NC_000913	274178	274935
UN	760	.	NC_000913	274938	274948
UN	761	.	NC_000913	274951	274952
UN	762	.	NC_000913	276899	276899
UN	763	.	NC_000913	279402	279705
UN	764	.	NC_000913	290175	290175
UN	765	.	NC_000913	290831	290831
UN	766	.	NC_000913	290839	291174
UN	767	.	NC_000913	292433	292433
UN	768	.	NC_000913	298441	298441
UN	769	.	NC_000913	303541	303541
UN	770	.	NC_000913	306023	306023
UN	771	.	NC_000913	315465	316260
UN	772	.	NC_000913	316262	316264
UN	773	.	NC_000913	325394	325394
UN	774	.	NC_000913	327999	327999
UN	775	.	NC_000913	331879	331879
UN	776	.	NC_000913	357887	357887
UN	777	.	NC_000913	362730	362730
UN	778	.	NC_000913	381453	382369
UN	779	.	NC_000913	382376	382377
UN	780	.	NC_000913	382379	382380
UN	781	.	NC_000913	382383	382383
UN	782	.	NC_000913	382385	382385
UN	783	.	NC_000913	382387	382388
UN	784	.	NC_000913	382392	382392
UN	785	.	NC_000913	391905	392776
UN	786	.	NC_000913	392779	392779
UN	787	.	NC_000913	392784	392784
UN	788	.	NC_000913	401252	401252
UN	789	.	NC_000913	503807	503807
UN	790	.	NC_000913	526083	526084
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UN	792	.	NC_000913	526088	526509
UN	793	.	NC_000913	527611	527611
UN	794	.	NC_000913	527624	527624
UN	795	.	NC_000913	527626	527626
UN	796	.	NC_000913	528632	528638
UN	797	.	NC_000913	528640	528641
UN	798	.	NC_000913	528644	528662
UN	799	.	NC_000913	528673	528673
UN	800	.	NC_000913	528701	528702
UN	801	.	NC_000913	528704	528705
UN	802	.	NC_000913	528707	528707
UN	803	.	NC_000913	565829	577187
UN	804	.	NC_000913	585335	585335
UN	805	.	NC_000913	585346	585349
UN	806	.	NC_000913	585353	585354
UN	807	.	NC_000913	585367	585367
UN	808	.	NC_000913	585371	585373
UN	809	.	NC_000913	585377	585377
UN	810	.	NC_000913	585381	585384
UN	811	.	NC_000913	585390	585390
UN	812	.	NC_000913	594008	594008
UN	813	.	NC_000913	608205	608208
UN	814	.	NC_000913	608210	608210
UN	815	.	NC_000913	608212	608212
UN	816	.	NC_000913	608216	609194
UN	817	.	NC_000913	686033	686034
UN	818	.	NC_000913	686037	686084
UN	819	.	NC_000913	686086	686086
UN	820	.	NC_000913	686092	686092
UN	821	.	NC_000913	686146	686146
UN	822	.	NC_000913	688049	688049
UN	823	.	NC_000913	688060	688060
UN	824	.	NC_000913	688068	688831
UN	825	.	NC_000913	688833	688833
UN	826	.	NC_000913	688835	688835
UN	827	.	NC_000913	688838	688838
UN	828	.	NC_000913	729164	729164
UN	829	.	NC_000913	729169	729170
UN	830	.	NC_000913	729175	729176
UN	831	.	NC_000913	729178	729179
UN	832	.	NC_000913	729181	729182
UN	833	.	NC_000913	729186	729186
UN	834	.	NC_000913	729191	729191
UN	835	.	NC_000913	729202	729202
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UN	837	.	NC_000913	729208	729208
UN	838	.	NC_000913	729211	729212
UN	839	.	NC_000913	729225	729228
UN	840	.	NC_000913	729232	729237
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UN	844	.	NC_000913	743705	743705
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UN	846	.	NC_000913	753076	753076
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UN	849	.	NC_000913	753090	753091
UN	850	.	NC_000913	753095	753096
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UN	853	.	NC_000913	753140	753140
UN	854	.	NC_000913	753150	753150
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UN	859	.	NC_000913	801532	801532
UN	860	.	NC_000913	801544	801544
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UN	863	.	NC_000913	801556	801556
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UN	865	.	NC_000913	801568	801568
UN	866	.	NC_000913	801570	801571
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UN	868	.	NC_000913	801579	801579
UN	869	.	NC_000913	801582	801582
UN	870	.	NC_000913	801584	801585
UN	871	.	NC_000913	801587	801587
UN	872	.	NC_000913	801591	801593
UN	873	.	NC_000913	805572	805591
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UN	875	.	NC_000913	805600	805600
UN	876	.	NC_000913	805606	805607
UN	877	.	NC_000913	807228	807228
UN	878	.	NC_000913	820626	820626
UN	879	.	NC_000913	820641	820642
UN	880	.	NC_000913	820644	820644
UN	881	.	NC_000913	820647	820647
UN	882	.	NC_000913	820654	820654
UN	883	.	NC_000913	820672	820672
UN	884	.	NC_000913	838101	838101
UN	885	.	NC_000913	838131	838131
UN	886	.	NC_000913	882392	882392
UN	887	.	NC_000913	922885	922885
UN	888	.	NC_000913	922896	922896
UN	889	.	NC_000913	922899	922899
UN	890	.	NC_000913	922906	922906
UN	891	.	NC_000913	922975	922975
UN	892	.	NC_000913	922980	922980
UN	893	.	NC_000913	922982	922982
UN	894	.	NC_000913	922992	922992
UN	895	.	NC_000913	954776	954776
UN	896	.	NC_000913	954780	954780
UN	897	.	NC_000913	954785	954786
UN	898	.	NC_000913	954788	954788
UN	899	.	NC_000913	954791	954791
UN	900	.	NC_000913	954794	954794
UN	901	.	NC_000913	954800	954800
UN	902	.	NC_000913	954803	954803
UN	903	.	NC_000913	954813	954813
UN	904	.	NC_000913	954817	954818
UN	905	.	NC_000913	959731	959731
UN	906	.	NC_000913	959733	959734
UN	907	.	NC_000913	959737	959737
UN	908	.	NC_000913	959742	959742
UN	909	.	NC_000913	959753	959753
UN	910	.	NC_000913	959757	959758
UN	911	.	NC_000913	959760	959761
UN	912	.	NC_000913	959764	959785
UN	913	.	NC_000913	959787	959789
UN	914	.	NC_000913	987154	987155
UN	915	.	NC_000913	987157	987157
UN	916	.	NC_000913	987159	987160
UN	917	.	NC_000913	987476	987476
UN	918	.	NC_000913	987479	987479
UN	919	.	NC_000913	987482	987507
UN	920	.	NC_000913	987512	987512
UN	921	.	NC_000913	987516	987523
UN	922	.	NC_000913	987526	987527
UN	923	.	NC_000913	987529	987530
UN	924	.	NC_000913	987532	987533
UN	925	.	NC_000913	1004012	1004012
UN	926	.	NC_000913	1015516	1015516
UN	927	.	NC_000913	1029356	1029356
UN	928	.	NC_000913	1029370	1029370
UN	929	.	NC_000913	1029389	1029389
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UN	932	.	NC_000913	1064044	1064045
UN	933	.	NC_000913	1064047	1064048
UN	934	.	NC_000913	1064053	1064053
UN	935	.	NC_000913	1064058	1064058
UN	936	.	NC_000913	1064062	1064062
UN	937	.	NC_000913	1064127	1064149
UN	938	.	NC_000913	1064153	1064154
UN	939	.	NC_000913	1064160	1064163
UN	940	.	NC_000913	1064167	1064167
UN	941	.	NC_000913	1064169	1064170
UN	942	.	NC_000913	1064172	1064173
UN	943	.	NC_000913	1064178	1064178
UN	944	.	NC_000913	1064180	1064181
UN	945	.	NC_000913	1064183	1064184
UN	946	.	NC_000913	1064190	1064190
UN	947	.	NC_000913	1064202	1064202
UN	948	.	NC_000913	1064205	1064205
UN	949	.	NC_000913	1064254	1064254
UN	950	.	NC_000913	1094369	1094369
UN	951	.	NC_000913	1094379	1094379
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UN	954	.	NC_000913	1095302	1095302
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UN	958	.	NC_000913	1100871	1100871
UN	959	.	NC_000913	1101332	1101332
UN	960	.	NC_000913	1101342	1101342
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UN	1743	.	NC_000913	4507685	4508499
UN	1744	.	NC_000913	4508504	4508504
UN	1745	.	NC_000913	4508506	4508506
UN	1746	.	NC_000913	4508508	4508508