| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 402,391 | Δ723 bp | coding (645‑1367/1416 nt) | phoA → | alkaline phosphatase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 402391 | 403113 | 723 | 34 [0] | [1] 35 | phoA | alkaline phosphatase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 402390 | 0 (0.000) | 34 (0.690) | 31/474 | 0.5 | 100% | coding (644/1416 nt) | phoA | alkaline phosphatase |
| ? | NC_000913 | 403114 = | 0 (0.000) | coding (1368/1416 nt) | phoA | alkaline phosphatase | |||||
GGCGCTGGAATTCGCTAAAAAGGAGGGTAACACGCTGGTCATAGTCACCGCTGATCACGCCCACGCCAGCCAGATTGTTGCGCCGGATACCAAAGCTCCGGGCCTCACCCAGGCGCTAAATACCAAAGATGGCGCAGTGATGGTGATGAGTTACGGGAACTCCGAAGAGGATTCACAAGAACATACCGGCAGTCAGTTGCGTATTGCGGCGTATGGCCCGCATGCCGCCAATGTTGTTGGACTGACCGACCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTTAACCACCGTCGGCGCTGCCGAGAGAACTTTAACC > NC_000913/402865‑403361 | aaccggtgtcaaaacctataacggcgcgctgggcgtcgatattcacgaaaaagatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgacc < 1:307945‑M2/2‑1 (MQ=255) aacctataacggcgcggtgggcgtcgatagtcaagaaaaagatccccccacgattctggaaattgcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagaggtgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatggccggttaacgctctggaaaaaggcggaaaaggatcgatttccgaCCAGACCGATctct < 2:439922‑M2/14‑1 (MQ=255) ctataacggcgcgctgggcgtcgatattcacgaaaaagatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCtcttct > 2:227155‑M2/235‑251 (MQ=255) ctgggcgtcgatattcacgaaaaagatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGc > 1:48269‑M2/222‑251 (MQ=255) cgtctatatgcacgaaaaagatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagaggtgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGTCCGATCTCTTCTACACCACGAAAGCCGctc < 2:360862‑M2/35‑1 (MQ=255) cgatattcacgaaaaagatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTg < 1:35061‑M2/37‑1 (MQ=255) aaaagatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATaaa < 1:227155‑M2/50‑1 (MQ=255) aaagatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATaaaa < 1:270292‑M2/51‑1 (MQ=255) agatcacccaacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAAcc < 1:40332‑M2/53‑1 (MQ=255) ctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGaa > 2:73145‑M2/183‑209 (MQ=255) ctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGaa < 1:73145‑M2/27‑1 (MQ=255) ctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAaaccgctctggggctgaaataacacagagcccagacgtgaat > 2:167729‑M2/183‑231 (MQ=255) aaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattacctaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACcg < 1:254712‑M2/54‑1 (MQ=255) aaaagccgcaggactggcgaccggaaacgtttctaccgcagcgttgcaggatgccacccccgatgcgctgggggcacatgcgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatttccgggtaacgctctggaaaaaggcggcaaaggatcgattaccgaCCAGGCCGGTCTCTTCTACACCATGAAagccgctctggggctgaaataaaaccgagatcggacgaccctcgtgtcgggt > 2:254712‑M2/172‑225 (MQ=255) aaaggcgcatgtctggcgaccgggatcgtttctaccgcagaggtgcaggttgccacggccgctgtgctggtggcacttgtgacctcgcgcaaatgatacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatggattaccgaCCAGTCCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGctgctgg < 2:261032‑M2/81‑4 (MQ=255) acgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGCTCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTAGCTGTTAGCAAcc > 2:562541‑M2/146‑250 (MQ=255) agagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgcaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGCTCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGccc > 1:41081‑M2/133‑191 (MQ=255) agagttgcaggatgacacgcccgctgcgctgtgtgcacatgtgacctcgcgcaaaggctacggtccgcgcgcgaccagtgaaaaatgcccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGACCTCTGCTACGCCATGAAAGCCGCTCTGGGGCTGAAATAAACCCTCGccc < 2:41081‑M2/59‑1 (MQ=255) tgcaggatgccacgcccgctgcgaaggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggttcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATACAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATAGCAGATCAc > 2:224126‑M2/128‑251 (MQ=255) gccgatctgggggcacatgtgccctctcgctaaggctacggtccgagcgggacctgtgaaaaatgtccggggaacgctctggaaaaaggctgaaaaggatcgattaccgaCCAGACCGAGCTCGTCTACTCCATGAACGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTGTTGCTGTTAGCATCCAGACTTAATGGCAGATCACGGGCTCATACGTTCATg < 2:564452‑M2/141‑1 (MQ=255) cgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTa < 1:562541‑M2/145‑1 (MQ=255) atgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAagag < 1:305031‑M2/157‑1 (MQ=255) ccgagcaactgctacgggccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattacctaCCAGGCCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAATCCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTGAATGGCAGATCACGGTCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTg < 2:96286‑M2/165‑1 (MQ=255) gcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATTCGCTCATGGTTAAAACATGAAAAGGGATGGTGCt > 2:254636‑M2/85‑251 (MQ=255) aaaaggttcgggttacgctctggaaaaaggtggaaatggatccattaccgaCCAGACCGATCTCTTCTACACTCTGAAAGTCGCTCTGGGGCTGGAATAAAACCGCGCCTGGCAGTGATTTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTGAATGGGAGATCACTGGCGCATACGCTTATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTTCTGGTTACCTTGCTTTTc < 2:62045‑M2/200‑1 (MQ=255) aaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCg > 1:509037‑M2/51‑251 (MQ=255) ccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTgg > 1:224982‑M2/45‑251 (MQ=255) ggtaacgctctggaagaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTGCTACACCATGAAAGCCGCTCTGGGGTTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAATCATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCttt < 2:396422‑M2/198‑1 (MQ=255) ggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCttt > 1:396422‑M2/42‑239 (MQ=255) ggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTGTCGGTCTGGttt < 1:138529‑M2/210‑1 (MQ=255) aaaacggcggaaacggatcgattaacgaACAGACCGATATCTTCTACACCATGAAAGCCGCTCTGGGGCTGAACTAACACCGCGCCCGGCAGTGAATTTTCGCTGACGGGTGGTTATTTTGCTGTTAGAGACCAGGCTTAATGGCAGATAACGGGCGCATAAGCTCATGGTTAAAACCTGAAGTGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTtacccacctt > 2:36495‑M2/29‑249 (MQ=255) aaaaggcggaaaaggagcgattaccgcCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAACCCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTTAACCACCGTc < 2:479777‑M2/224‑1 (MQ=255) ggaaaaggagcgcttaccgaCCAGAACGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGAAGTGAAGTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGTCTTAATGGAAGATCACGGGCGCATAAGCCCATGGTTAAAACATGAAGAGGGATGGAAATTTGAAAATAACATTCCTGGTTACCTTGCTTTTCGGTCTGTTTTTTTTAACCaccgtcgacggtg > 2:556202‑M2/21‑245 (MQ=255) aaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTTAACCACCGTCGGCGCTGcc > 1:244312‑M2/19‑251 (MQ=255) cgaccAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTTAACCACCGTCGGCGCTGCCGAGAGAACTTTAAcc > 1:561996/1‑251 (MQ=255) | GGCGCTGGAATTCGCTAAAAAGGAGGGTAACACGCTGGTCATAGTCACCGCTGATCACGCCCACGCCAGCCAGATTGTTGCGCCGGATACCAAAGCTCCGGGCCTCACCCAGGCGCTAAATACCAAAGATGGCGCAGTGATGGTGATGAGTTACGGGAACTCCGAAGAGGATTCACAAGAACATACCGGCAGTCAGTTGCGTATTGCGGCGTATGGCCCGCATGCCGCCAATGTTGTTGGACTGACCGACCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTTAACCACCGTCGGCGCTGCCGAGAGAACTTTAACC > NC_000913/402865‑403361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |