| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 402,391 | Δ723 bp | coding (645‑1367/1416 nt) | phoA → | alkaline phosphatase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 402391 | 403113 | 723 | 34 [0] | [1] 35 | phoA | alkaline phosphatase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 402390 | 0 (0.000) | 34 (0.690) | 31/474 | 0.5 | 100% | coding (644/1416 nt) | phoA | alkaline phosphatase |
| ? | NC_000913 | 403114 = | 0 (0.000) | coding (1368/1416 nt) | phoA | alkaline phosphatase | |||||
AACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCCGACGTTACGCTTGGCGGCGGCGCAAAAACCTTTGCTGAAACGGCAACCGCTGGTGAATGGCAGGGAAAAACGCTGCGTGAACAGGCACAGGCGCGTGGTTATCAGTTGGTGAGCGATGCTGCCTCACTGAATTCGGTGACGGAAGCGAATCAGCAAAAACCCCTGCTTGGCCTGTTTGCTGACGGCAATATGCCAGTGCGCTGGCTAGGAC > NC_000913/402142‑402623 | aaCCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAcc < 1:307945‑M1/251‑3 (MQ=255) aaCCTATAACGGCGCGGTGGGCGTCGATAGTCAAGAAAAAGATCCCCCCACGATTCTGGAAATTGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGGTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGGCCGGTTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTTCCGAccagaccgatctct < 2:439922‑M1/251‑15 (MQ=255) cTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttct > 2:227155‑M1/1‑234 (MQ=255) cTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagc > 1:48269‑M1/1‑221 (MQ=255) cGTCTATATGCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGGTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagtccgatctcttctacaccacgaaagccgctc < 2:360862‑M1/251‑36 (MQ=255) cGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctg < 1:35061‑M1/250‑38 (MQ=255) aaaaGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaa < 1:227155‑M1/251‑51 (MQ=255) aaaGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaa < 1:270292‑M1/251‑52 (MQ=255) aGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaacc < 1:40332‑M1/251‑54 (MQ=255) cTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaaaccgctctggggctgaaataacacagagcccagacgtgaat > 2:167729‑M1/1‑182 (MQ=255) cTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaa > 2:73145‑M1/1‑182 (MQ=255) cTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaa < 1:73145‑M1/209‑28 (MQ=255) aaaaGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCTAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccg < 1:254712‑M1/225‑55 (MQ=255) aaaaGCCGCAGGACTGGCGACCGGAAACGTTTCTACCGCAGCGTTGCAGGATGCCACCCCCGATGCGCTGGGG‑GCACATGCGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATTTCCGGGTAACGCTCTGGAAAAAGGCGGCAAAGGATCGATTACCGAccaggccggtctcttctacaccatgaaagccgctctggggctgaaataaaaccgagatcggacgaccctcgtgtcgggt > 2:254712‑M1/1‑171 (MQ=255) aaaGGCGCATGTCTGGCGACCGGGATCGTTTCTACCGCAGAGGTGCAGGTTGCCACGGCCGCTGTGCTGGTG‑GCACTTGTGACCTCGCGCAAATGATACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATGGATTACCGAccagtccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgctgg < 2:261032‑M1/251‑82 (MQ=255) aCGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgctctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggttttttagctgttagcaacc > 2:562541‑M1/1‑145 (MQ=255) agagTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGCAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgctctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgccc > 1:41081‑M1/1‑132 (MQ=255) agagTTGCAGGATGACACGCCCGCTGCGCT‑GTGTGCACATGTGACCTCGCGCAAAGGCTACGGTCCGCGCGCGACCAGTGAAAAATGCCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgacctctgctacgccatgaaagccgctctggggctgaaataaaccctcgccc < 2:41081‑M1/191‑60 (MQ=255) tGCAGGATGCCACGCCCGCTGCGAAGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGTTCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaatacaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatagcagatcac > 2:224126‑M1/1‑127 (MQ=255) gccgatctgggg‑gcaCATGTGCCCTCTCGCTAAGGCTACGGTCCGAGCGGGACCTGTGAAAAATGTCCGGGGAACGCTCTGGAAAAAGGCTGAAAAGGATCGATTACCGAccagaccgagctcgtctactccatgaacgccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggttttgttgctgttagcatccagacttaatggcagatcacgggctcatacgttcatg < 2:564452‑M1/245‑142 (MQ=255) cgctgGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggtta < 1:562541‑M1/251‑146 (MQ=255) aTGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagag < 1:305031‑M1/251‑158 (MQ=255) ccgagcaactGCTACGGGCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCTAccaggccgatctcttctacaccatgaaagccgctctggggctgaaataaatccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagactgaatggcagatcacggtcgcatacgctcatggttaaaacatgaagagggatggtg < 2:96286‑M1/247‑166 (MQ=255) gcgcAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcattcgctcatggttaaaacatgaaaagggatggtgct > 2:254636‑M1/1‑84 (MQ=255) aaaaggttcgggttacgCTCTGGAAAAAGGTGGAAATGGATCCATTACCGAccagaccgatctcttctacactctgaaagtcgctctggggctggaataaaaccgcgcctggcagtgatttttcgctgccgggtggtttttttgctgttagcaaccagactgaatgggagatcactggcgcatacgcttatggttaaaacatgaagagggatggtgctatgaaaataacatttctggttaccttgcttttc < 2:62045‑M1/243‑201 (MQ=255) aaaTGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatggtgctatgaaaataacattactggttaccttgcttttcg > 1:509037‑M1/1‑50 (MQ=255) ccGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatggtgctatgaaaataacattactggttaccttgcttttcggtctgg > 1:224982‑M1/1‑44 (MQ=255) ggTAACGCTCTGGAAGAAGGCGGAAAAGGATCGATTACCGAccagaccgatctctgctacaccatgaaagccgctctggggttgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaatcatgaagagggatggtgctatgaaaataacattactggttaccttgcttt < 2:396422‑M1/239‑199 (MQ=255) ggTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatggtgctatgaaaataacattactggttaccttgcttt > 1:396422‑M1/1‑41 (MQ=255) ggTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatggtgctatgaaaataacattactggttaccttgcttgtcggtctggttt < 1:138529‑M1/251‑211 (MQ=255) aaaacGGCGGAAACGGATCGATTAACGAacagaccgatatcttctacaccatgaaagccgctctggggctgaactaacaccgcgcccggcagtgaattttcgctgacgggtggttattttgctgttagagaccaggcttaatggcagataacgggcgcataagctcatggttaaaacctgaagtgggatggtgctatgaaaataacattactggttaccttgcttttcggtctggtttttttacccacctt > 2:36495‑M1/1‑28 (MQ=255) aaaaGGCGGAAAAGGAGCGATTACCGCccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaacccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatggtgctatgaaaataacattactggttaccttgcttttcggtctggtttttttaaccaccgtc < 2:479777‑M1/251‑225 (MQ=255) ggAAAAGGAGCGCTTACCGAccagaacgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggaagtgaagtttcgctgccgggtggtttttttgctgttagcaaccagtcttaatggaagatcacgggcgcataagcccatggttaaaacatgaagagggatggaaatttgaaaataacattcctggttaccttgcttttcggtctgttttttttaaccaccgtcgacggtg > 2:556202‑M1/1‑20 (MQ=255) aaaaGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatggtgctatgaaaataacattactggttaccttgcttttcggtctggtttttttaaccaccgtcggcgctgcc > 1:244312‑M1/1‑18 (MQ=255) | AACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTG‑GCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCCGACGTTACGCTTGGCGGCGGCGCAAAAACCTTTGCTGAAACGGCAACCGCTGGTGAATGGCAGGGAAAAACGCTGCGTGAACAGGCACAGGCGCGTGGTTATCAGTTGGTGAGCGATGCTGCCTCACTGAATTCGGTGACGGAAGCGAATCAGCAAAAACCCCTGCTTGGCCTGTTTGCTGACGGCAATATGCCAGTGCGCTGGCTAGGAC > NC_000913/402142‑402623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |