mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 43 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,067 | 0 | C | . | 78.3% | 50.4 / 16.8 | 23 | intergenic (+47/‑167) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein YaaX |
| * | NC_000913 | 4,509,556 | 0 | T | C | 54.5% | 10.9 / 113.4 | 105 | pseudogene (78/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,562 | 0 | T | C | 53.9% | 1.9 / 120.7 | 106 | pseudogene (84/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,623 | 0 | G | A | 52.9% | ‑2.1 / 107.8 | 87 | pseudogene (145/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,632 | 0 | A | G | 51.8% | ‑2.0 / 107.1 | 86 | pseudogene (154/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,592 | 0 | G | A | 50.5% | ‑3.2 / 122.0 | 97 | pseudogene (114/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,628 | 0 | A | G | 49.4% | 0.6 / 109.7 | 84 | pseudogene (150/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,537 | 0 | G | A | 49.0% | 14.2 / 125.2 | 106 | pseudogene (59/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,524 | 0 | C | T | 47.7% | 24.6 / 132.3 | 110 | pseudogene (46/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,586 | 0 | A | C | 47.4% | 16.7 / 116.0 | 97 | pseudogene (108/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,633 | 0 | C | T | 47.0% | 12.5 / 93.1 | 86 | pseudogene (155/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,667 | 0 | A | C | 47.0% | ‑6.1 / 123.8 | 83 | pseudogene (189/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,544 | 0 | G | A | 46.7% | 23.6 / 127.3 | 108 | pseudogene (66/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,640 | 0 | T | C | 46.5% | 13.0 / 100.8 | 87 | pseudogene (162/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 271,817 | 0 | G | A | 46.3% | 12.5 / 102.2 | 82 | pseudogene (54/427 nt) | insN | IS911A regulator fragment |
| * | NC_000913 | 4,509,630 | 0 | C | T | 46.3% | 1.6 / 95.2 | 85 | pseudogene (152/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 271,838 | 0 | T | A | 46.1% | 32.2 / 94.9 | 79 | pseudogene (75/427 nt) | insN | IS911A regulator fragment |
| * | NC_000913 | 4,509,487 | 0 | A | G | 46.0% | 31.4 / 126.0 | 112 | pseudogene (9/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,637 | 0 | C | T | 45.9% | 6.0 / 103.2 | 87 | pseudogene (159/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 271,822 | 0 | G | A | 45.8% | 20.7 / 96.6 | 83 | pseudogene (59/427 nt) | insN | IS911A regulator fragment |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3652036 = | NA (NA) | 3 (0.070) | 3/476 | 3.9 | 5.1% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3938725 = | 56 (1.220) | coding (499/993 nt) | rbsR | DNA‑binding transcriptional dual regulator RbsR | |||||
| * | ? | NC_000913 | = 2500718 | 44 (0.960) | 3 (0.070) | 3/464 | 3.9 | 5.5% | coding (336/735 nt) | pyrR | DNA‑binding transcriptional activator PyrR |
| ? | NC_000913 | 2501412 = | 60 (1.350) | coding (283/858 nt) | ypdC | putative AraC‑type DNA‑binding transcriptional regulator YpdC | |||||
| * | ? | NC_000913 | 224140 = | NA (NA) | 3 (0.070) | 3/476 | 3.9 | 7.2% | noncoding (370/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | = 1408753 | 39 (0.850) | coding (704/984 nt) | zntB | Zn(2(+)):H(+) symporter | |||||