#=GENOME_DIFF	1.0
#=CREATED	18:34:35 28 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20231211run9/CV58_S14_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20231211run9/CV58_S14_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20231211run9/CV58_S14_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV58_S14_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV58_S14_L001_R2_001.fastq.gz
#=CONVERTED-BASES	233622123
#=CONVERTED-READS	972027
#=INPUT-BASES	233634526
#=INPUT-READS	972134
#=MAPPED-BASES	210804767
#=MAPPED-READS	884092
DEL	1	970	NC_000913	310	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	2	971	NC_000913	393	G
SNP	3	972	NC_000913	588	A
SNP	4	973	NC_000913	774	C
SNP	5	974	NC_000913	867	T
SNP	6	975	NC_000913	939	A
SNP	7	976	NC_000913	966	C
SNP	8	977	NC_000913	969	G
SNP	9	978	NC_000913	1206	T
SNP	10	979	NC_000913	1278	T
SNP	11	980	NC_000913	1299	C
SNP	12	981	NC_000913	1302	C
SNP	13	982	NC_000913	1323	T
SNP	14	983	NC_000913	1341	G
SNP	15	984	NC_000913	1407	T
SNP	16	985	NC_000913	1425	G
SNP	17	986	NC_000913	1509	G
SNP	18	987	NC_000913	1593	G
SNP	19	988	NC_000913	1797	A
SNP	20	989	NC_000913	1860	A
SNP	21	990	NC_000913	1875	G
SNP	22	991	NC_000913	1884	A
SNP	23	992	NC_000913	2038	T
SNP	24	993	NC_000913	2108	T
SNP	25	994	NC_000913	2116	C
SNP	26	995	NC_000913	2211	T
SNP	27	996	NC_000913	2247	A
SNP	28	997	NC_000913	2307	T
SNP	29	998	NC_000913	2310	T
SNP	30	999	NC_000913	2343	T
SNP	31	1000	NC_000913	2373	A
SNP	32	1001	NC_000913	2382	G
SNP	33	1002	NC_000913	2469	T
SNP	34	1003	NC_000913	2508	G
SNP	35	1004	NC_000913	2595	T
SNP	36	1005	NC_000913	2597	C
SNP	37	1006	NC_000913	2676	T
SNP	38	1007	NC_000913	2709	G
SNP	39	1008	NC_000913	2760	C
SNP	40	1009	NC_000913	3025	G
SNP	41	1010	NC_000913	3028	T
SNP	42	1011	NC_000913	3031	C
SNP	43	1012	NC_000913	3055	T
SNP	44	1013	NC_000913	3073	A
SNP	45	1014	NC_000913	3097	C
SNP	46	1015	NC_000913	3142	T
SNP	47	1016	NC_000913	3196	A
SNP	48	1017	NC_000913	3199	A
SNP	49	1018	NC_000913	3244	T
SNP	50	1019	NC_000913	3424	T
SNP	51	1020	NC_000913	3520	T
SNP	52	1021	NC_000913	3547	T
SNP	53	1022	NC_000913	3622	T
SNP	54	1023	NC_000913	3763	T
SNP	55	1024	NC_000913	3937	G
SNP	56	1025	NC_000913	4102	C
SNP	57	1026	NC_000913	4336	G
SNP	58	1027	NC_000913	4351	G
SNP	59	1028	NC_000913	4363	A
SNP	60	1029	NC_000913	4420	A
SUB	61	1030,1031	NC_000913	4441	2	AG
SNP	62	1032	NC_000913	4780	C
SNP	63	1033	NC_000913	4804	G
SNP	64	1034	NC_000913	4822	C
SNP	65	1036	NC_000913	5099	C
SNP	66	1037	NC_000913	5171	T
SNP	67	1038	NC_000913	5183	C
SNP	68	1039	NC_000913	5234	A
SNP	69	1040	NC_000913	5442	C
SNP	70	1041	NC_000913	5603	G
SNP	71	1042	NC_000913	5642	C
SNP	72	1043	NC_000913	5732	G
SNP	73	1044	NC_000913	5806	A
SNP	74	1045	NC_000913	5851	T
SNP	75	1046	NC_000913	6106	C
SNP	76	1047	NC_000913	6239	T
SNP	77	1048	NC_000913	6349	T
SNP	78	1049	NC_000913	6502	A
SNP	79	1050	NC_000913	6574	G
SNP	80	1051	NC_000913	6595	C
SNP	81	1052	NC_000913	6748	A
SNP	82	1053	NC_000913	6850	G
SNP	83	1054	NC_000913	6898	G
SNP	84	1055	NC_000913	6933	A
SNP	85	1056	NC_000913	7132	C
SNP	86	1057	NC_000913	7297	C
SNP	87	1058	NC_000913	7342	C
SNP	88	1059	NC_000913	7384	C
SNP	89	1060	NC_000913	7395	C
SNP	90	1061	NC_000913	7414	A
SNP	91	1062	NC_000913	7456	T
SNP	92	1063	NC_000913	7459	C
SNP	93	1064	NC_000913	7474	C
SNP	94	1065	NC_000913	7479	T
SNP	95	1066	NC_000913	7498	G
SNP	96	1067	NC_000913	7598	G
SNP	97	1068	NC_000913	7600	A
SNP	98	1069	NC_000913	7618	C
SNP	99	1070	NC_000913	7624	G
SNP	100	1071	NC_000913	7627	G
SNP	101	1072	NC_000913	7681	G
SNP	102	1073	NC_000913	7711	T
SNP	103	1074	NC_000913	7939	A
SNP	104	1075	NC_000913	8963	T
SUB	105	1076,1077	NC_000913	8975	2	TA
SNP	106	1078	NC_000913	8996	T
SNP	107	1079	NC_000913	9488	A
SNP	108	1080	NC_000913	9623	A
SNP	109	1081	NC_000913	9665	T
SNP	110	1082	NC_000913	9668	T
SNP	111	1083	NC_000913	9754	C
SNP	112	1084	NC_000913	9839	A
SNP	113	1085	NC_000913	9851	T
SNP	114	1086	NC_000913	10006	A
SNP	115	1087	NC_000913	10015	A
SNP	116	1088	NC_000913	10024	A
SNP	117	1089	NC_000913	10099	A
SNP	118	1090	NC_000913	10260	A
SNP	119	1091	NC_000913	10336	G
SNP	120	1092	NC_000913	10548	A
SNP	121	1093	NC_000913	10637	A
SNP	122	1094	NC_000913	10642	G
SNP	123	1095	NC_000913	10703	T
SNP	124	1096	NC_000913	10718	A
SNP	125	1097	NC_000913	10747	A
SNP	126	1098	NC_000913	10751	T
SNP	127	1099	NC_000913	10754	G
SNP	128	1100	NC_000913	10757	C
SNP	129	1101	NC_000913	10772	A
SNP	130	1102	NC_000913	10802	C
SNP	131	1103	NC_000913	10840	A
SNP	132	1104	NC_000913	10865	G
SNP	133	1105	NC_000913	10973	A
SNP	134	1106	NC_000913	10985	G
SNP	135	1107	NC_000913	11021	C
SNP	136	1108	NC_000913	11063	T
SNP	137	1109	NC_000913	11156	A
SNP	138	1110	NC_000913	11225	T
SNP	139	1111	NC_000913	11366	T
SNP	140	1112	NC_000913	11439	G
SNP	141	1113	NC_000913	11481	A
SNP	142	1114	NC_000913	11541	A
SNP	143	1115	NC_000913	11695	A
SNP	144	1116	NC_000913	11814	A
SNP	145	1117	NC_000913	11854	G
SNP	146	1118	NC_000913	11861	T
SNP	147	1119	NC_000913	11925	C
SNP	148	1120	NC_000913	12026	G
SNP	149	1121	NC_000913	12237	T
SNP	150	1122	NC_000913	12309	G
SNP	151	1123	NC_000913	12357	C
SNP	152	1124	NC_000913	12384	C
SNP	153	1125	NC_000913	12507	C
SNP	154	1126	NC_000913	12714	T
SNP	155	1127	NC_000913	12846	T
SNP	156	1128	NC_000913	12879	C
SNP	157	1129	NC_000913	13014	G
SNP	158	1130	NC_000913	13029	T
SNP	159	1131	NC_000913	13320	G
SNP	160	1132	NC_000913	13539	G
SNP	161	1133	NC_000913	13866	A
SNP	162	1134	NC_000913	13932	G
SNP	163	1135	NC_000913	14223	A
SNP	164	1136	NC_000913	14232	A
SNP	165	1137	NC_000913	14401	T
SNP	166	1138	NC_000913	14647	C
SNP	167	1139	NC_000913	14686	T
SNP	168	1140	NC_000913	14698	T
SNP	169	1141	NC_000913	14701	C
SNP	170	1142	NC_000913	14704	G
SNP	171	1143	NC_000913	14956	C
SNP	172	1144	NC_000913	15073	T
SNP	173	1145	NC_000913	15172	G
SNP	174	1146	NC_000913	15174	A
SNP	175	1147	NC_000913	15226	T
SNP	176	1148	NC_000913	15328	T
SNP	177	1149	NC_000913	15338	T
SNP	178	1150	NC_000913	15369	A
SNP	179	1151	NC_000913	16749	A
SNP	180	1152	NC_000913	16966	G
SNP	181	1153	NC_000913	16981	A
SNP	182	1154	NC_000913	17039	T
SNP	183	1155	NC_000913	17085	C
SNP	184	1156	NC_000913	17175	T
SNP	185	1157	NC_000913	17219	T
SUB	186	1158,1159	NC_000913	17228	2	AT
SNP	187	1160	NC_000913	17231	A
SNP	188	1161	NC_000913	17245	G
SNP	189	1162	NC_000913	17281	A
SNP	190	1163	NC_000913	17309	G
INS	191	1164	NC_000913	17348	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SNP	192	1165	NC_000913	17350	T
SNP	193	1166	NC_000913	17383	G
SNP	194	1167	NC_000913	17385	A
SNP	195	1168	NC_000913	17399	G
SNP	196	1169	NC_000913	17436	T
SNP	197	1170	NC_000913	17578	T
SNP	198	1171	NC_000913	17809	T
SNP	199	1172	NC_000913	17830	C
SNP	200	1173	NC_000913	17893	C
SNP	201	1174	NC_000913	17908	G
SNP	202	1175	NC_000913	18093	T
SNP	203	1176	NC_000913	18118	G
SNP	204	1177	NC_000913	18127	A
SNP	205	1178	NC_000913	18169	C
SNP	206	1179	NC_000913	18253	A
SNP	207	1180	NC_000913	18322	T
SNP	208	1181	NC_000913	18477	C
SNP	209	1182	NC_000913	19014	T
SNP	210	1183	NC_000913	19398	G
SNP	211	1184	NC_000913	19613	C
SNP	212	1185	NC_000913	19627	C
INS	213	1186	NC_000913	19634	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	214	1187	NC_000913	19670	A
SNP	215	1188	NC_000913	19715	A
SNP	216	1189	NC_000913	20590	C
SNP	217	1190	NC_000913	20600	A
DEL	218	1191	NC_000913	20605	1
INS	219	2017	NC_000913	20703	GCAAGAACCTGCAA
SNP	220	1192	NC_000913	21617	C
SNP	221	1193	NC_000913	21619	G
SNP	222	1194	NC_000913	21750	T
SNP	223	1195	NC_000913	21895	T
SNP	224	1196	NC_000913	21910	T
SNP	225	1197	NC_000913	21922	G
SNP	226	1198	NC_000913	21925	G
SNP	227	1199	NC_000913	21952	A
SNP	228	1200	NC_000913	22048	A
SNP	229	1201	NC_000913	22373	C
SNP	230	1202	NC_000913	22468	G
SNP	231	1203	NC_000913	22942	G
SNP	232	1204	NC_000913	22945	A
SNP	233	1205	NC_000913	23032	T
SNP	234	1206	NC_000913	23038	G
SNP	235	1207	NC_000913	23104	G
SNP	236	1208	NC_000913	23116	T
SNP	237	1209	NC_000913	23137	G
SNP	238	1210	NC_000913	23161	T
SNP	239	1211	NC_000913	23270	A
SNP	240	1212	NC_000913	23297	T
SNP	241	1213	NC_000913	23803	C
SNP	242	1214	NC_000913	23860	C
SUB	243	1215,1216	NC_000913	23896	2	TA
SNP	244	1217	NC_000913	23899	C
SNP	245	1218	NC_000913	23956	C
SNP	246	1219	NC_000913	23962	T
SNP	247	1220	NC_000913	23977	T
SUB	248	1221,1222	NC_000913	23980	2	TC
SNP	249	1223	NC_000913	23983	C
SNP	250	1224	NC_000913	23986	C
SNP	251	1225	NC_000913	24085	G
SNP	252	1226	NC_000913	24091	T
SNP	253	1227	NC_000913	24094	T
SNP	254	1228	NC_000913	24133	A
SNP	255	1229	NC_000913	24136	C
SNP	256	1230	NC_000913	24217	C
SNP	257	1231	NC_000913	24340	C
SNP	258	1232	NC_000913	24616	C
SNP	259	1233	NC_000913	24646	G
SNP	260	1234	NC_000913	24670	T
SNP	261	1235	NC_000913	24781	T
SNP	262	1236	NC_000913	24799	A
SNP	263	1237	NC_000913	24935	G
SNP	264	1238	NC_000913	24977	T
SNP	265	1239	NC_000913	25598	G
SNP	266	1240	NC_000913	25677	A
SNP	267	1241	NC_000913	25685	A
SNP	268	1242	NC_000913	26534	C
SNP	269	1243	NC_000913	26606	C
SNP	270	1244	NC_000913	26609	T
SNP	271	1245	NC_000913	26621	G
SNP	272	1246	NC_000913	26624	G
SNP	273	1247	NC_000913	26636	C
SNP	274	1248	NC_000913	26648	T
SNP	275	1249	NC_000913	26663	T
SNP	276	1250	NC_000913	26666	G
SNP	277	1251	NC_000913	27026	T
SNP	278	1252	NC_000913	27104	A
SNP	279	1253	NC_000913	27367	C
SNP	280	1254	NC_000913	45950	A
SNP	281	1255	NC_000913	45978	T
SNP	282	1256	NC_000913	46028	C
SNP	283	1257	NC_000913	46247	C
SNP	284	1258	NC_000913	46253	C
SNP	285	1259	NC_000913	46277	C
SNP	286	1260	NC_000913	46448	A
SNP	287	1261	NC_000913	46634	T
SNP	288	1262	NC_000913	46652	G
SNP	289	1263	NC_000913	46655	G
SNP	290	1264	NC_000913	46661	C
SNP	291	1265	NC_000913	46790	G
SNP	292	1266	NC_000913	46943	C
SNP	293	1267	NC_000913	46976	G
SNP	294	1268	NC_000913	47099	A
SNP	295	1269	NC_000913	47434	C
SNP	296	1270	NC_000913	48033	G
SNP	297	1271	NC_000913	66635	T
SNP	298	1272	NC_000913	71170	C
SNP	299	1273	NC_000913	81102	A
SNP	300	1274	NC_000913	154182	T
SNP	301	1275	NC_000913	156068	G
DEL	302	1989,2019	NC_000913	257908	776
SNP	303	1286	NC_000913	472849	G
SNP	304	1287	NC_000913	495622	T
SNP	305	1288	NC_000913	500988	T
SNP	306	1289	NC_000913	514434	T
SNP	307	1290	NC_000913	534742	A
DEL	308	1996,2022	NC_000913	575786	3398	mediated=IS5
SNP	309	1291	NC_000913	582597	T
SNP	310	1292	NC_000913	602835	A
SNP	311	1293	NC_000913	674259	A
SNP	312	1294	NC_000913	677829	C
SNP	313	1295	NC_000913	694941	A
SNP	314	1296	NC_000913	696470	T
SNP	315	1297	NC_000913	708774	A
SNP	316	1298	NC_000913	721604	A
SNP	317	1299	NC_000913	780624	T
SNP	318	1300	NC_000913	789580	A
MOB	319	2021,2023	NC_000913	820914	IS5	1	4
SNP	320	1301	NC_000913	822527	T
SNP	321	1302	NC_000913	883396	T
SNP	322	1303	NC_000913	908169	T
SNP	323	1304	NC_000913	968252	A
SNP	324	1305	NC_000913	1054855	A
SNP	325	1306	NC_000913	1066699	T
SNP	326	1307	NC_000913	1075234	T
SNP	327	1308	NC_000913	1075528	T
SNP	328	1309	NC_000913	1078268	T
SNP	329	1310	NC_000913	1086153	T
SNP	330	1311	NC_000913	1090508	T
MOB	331	2025,2026	NC_000913	1105699	IS1	1	9
SNP	332	1312	NC_000913	1107209	T
SNP	333	1313	NC_000913	1109740	T
SNP	334	1314	NC_000913	1110033	A
SNP	335	1315	NC_000913	1112209	T
SNP	336	1316	NC_000913	1112421	T
SNP	337	1317	NC_000913	1114389	T
SNP	338	1318	NC_000913	1115185	T
SNP	339	1319	NC_000913	1117707	A
SNP	340	1320	NC_000913	1120111	A
SNP	341	1321	NC_000913	1121547	A
SNP	342	1322	NC_000913	1121762	A
SUB	343	1323,1324	NC_000913	1123823	2	AG
SNP	344	1325	NC_000913	1126316	A
SNP	345	1326	NC_000913	1126518	T
SNP	346	1327	NC_000913	1127334	A
SNP	347	1328	NC_000913	1127338	A
SNP	348	1329	NC_000913	1129796	A
SNP	349	1330	NC_000913	1130210	A
SNP	350	1331	NC_000913	1130803	T
SNP	351	1332	NC_000913	1133273	A
SNP	352	1333	NC_000913	1134466	T
SNP	353	1334	NC_000913	1138152	T
SNP	354	1335	NC_000913	1138533	T
SNP	355	1336	NC_000913	1138831	T
SNP	356	1337	NC_000913	1141865	A
SNP	357	1338	NC_000913	1144974	T
SNP	358	1339	NC_000913	1146110	T
SNP	359	1340	NC_000913	1146384	G
SNP	360	1341	NC_000913	1147792	A
SNP	361	1342	NC_000913	1161403	A
SNP	362	1343	NC_000913	1169836	G
SNP	363	1344	NC_000913	1171417	A
SNP	364	1345	NC_000913	1176602	T
SNP	365	1346	NC_000913	1180126	A
SNP	366	1347	NC_000913	1181995	A
SNP	367	1348	NC_000913	1189980	G
SNP	368	1349	NC_000913	1193141	A
SNP	369	1350	NC_000913	1194922	A
SNP	370	1351	NC_000913	1201548	C
SNP	371	1352	NC_000913	1201550	A
SNP	372	1353	NC_000913	1227656	A
SNP	373	1354	NC_000913	1244908	T
SNP	374	1355	NC_000913	1252059	T
SNP	375	1356	NC_000913	1252663	T
SNP	376	1357	NC_000913	1253002	T
SNP	377	1358	NC_000913	1282857	T
DEL	378	1997,2029	NC_000913	1299499	1199
SNP	379	1359	NC_000913	1306736	G
SNP	380	1360	NC_000913	1308684	C
SNP	381	1361	NC_000913	1323798	A
SNP	382	1362	NC_000913	1325054	A
SUB	383	1363,1364	NC_000913	1331059	2	AT
SNP	384	1365	NC_000913	1337394	G
SNP	385	1366	NC_000913	1341542	A
SNP	386	1367	NC_000913	1358859	C
SNP	387	1368	NC_000913	1375737	A
SNP	388	1369	NC_000913	1405758	A
SNP	389	1371	NC_000913	1490095	A
SUB	390	1372,1373,1374,1375	NC_000913	1497385	4	CAA
MOB	391	2030,2031	NC_000913	1586576	IS5	-1	4
SNP	392	1376	NC_000913	1629247	T
SNP	393	1377	NC_000913	1632513	T
SNP	394	1378	NC_000913	1643679	T
SNP	395	1379	NC_000913	1652331	C
MOB	396	2033,2034	NC_000913	1655874	IS2	1	5
SNP	397	1380	NC_000913	1660102	T
SNP	398	1381	NC_000913	1667460	A
SNP	399	1382	NC_000913	1894839	C
SNP	400	1383	NC_000913	1914928	T
SNP	401	1384	NC_000913	2040433	A
DEL	402	1385	NC_000913	2111259	1
DEL	403	1386,1387	NC_000913	2173363	2
SNP	404	1388	NC_000913	2173448	T
SNP	405	1389	NC_000913	2204395	A
MOB	406	2038,2039	NC_000913	2238374	IS1	-1	9
SNP	407	1390	NC_000913	2348366	A
SNP	408	1391	NC_000913	2388753	A
SUB	409	1392,1393	NC_000913	2512423	2	TT
DEL	410	2002,2042	NC_000913	2558699	6790
SNP	411	1394	NC_000913	2577937	C
SNP	412	1395	NC_000913	2582272	T
SNP	413	1396	NC_000913	2587112	T
SNP	414	1397	NC_000913	2600978	T
SNP	415	1398	NC_000913	2613763	A
SNP	416	1399	NC_000913	2623838	A
SNP	417	1400	NC_000913	2632711	A
SNP	418	1402	NC_000913	2684686	C
SNP	419	1403	NC_000913	2722946	A
SNP	420	1404	NC_000913	2774947	A
SNP	421	1405	NC_000913	2778119	T
SNP	422	1406	NC_000913	2806897	A
SNP	423	1407	NC_000913	2814595	T
SNP	424	1408	NC_000913	2849941	A
SNP	425	1409	NC_000913	2851821	A
SNP	426	1410	NC_000913	2867455	A
SNP	427	1411	NC_000913	2880635	C
SNP	428	1412	NC_000913	2881212	T
SNP	429	1413	NC_000913	2883115	A
SNP	430	1414	NC_000913	2886731	C
SNP	431	1415	NC_000913	2890626	A
SNP	432	1416	NC_000913	2893219	T
SNP	433	1417	NC_000913	2893647	T
SNP	434	1418	NC_000913	2894839	T
SNP	435	1419	NC_000913	2916216	A
SNP	436	1420	NC_000913	2926772	A
SNP	437	1421	NC_000913	2934092	A
DEL	438	1422	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	439	1423	NC_000913	3070858	G
SNP	440	1424	NC_000913	3096754	A
DEL	441	2003,2040	NC_000913	3131341	128	mediated=IS5
DEL	442	1425	NC_000913	3207549	1
SNP	443	1426	NC_000913	3256301	A
SNP	444	1427	NC_000913	3279276	G
SNP	445	1428	NC_000913	3296481	A
SNP	446	1429	NC_000913	3329743	T
SNP	447	1430	NC_000913	3364664	A
SNP	448	1431	NC_000913	3388041	G
SNP	449	1432	NC_000913	3400207	A
SNP	450	1433	NC_000913	3411689	T
SNP	451	1434	NC_000913	3433665	T
SNP	452	1435	NC_000913	3433900	T
SNP	453	1436	NC_000913	3474425	G
SNP	454	1437	NC_000913	3481131	A
SNP	455	1439	NC_000913	3486502	T
SNP	456	1440	NC_000913	3500129	A
SNP	457	1441	NC_000913	3511466	T
SNP	458	1442	NC_000913	3517171	A
SUB	459	1443,1444	NC_000913	3555047	2	TG
SNP	460	1445	NC_000913	3560362	A
INS	461	1446	NC_000913	3560455	G
SNP	462	1447	NC_000913	3591074	A
SNP	463	1448	NC_000913	3630221	T
SNP	464	1449	NC_000913	3646970	T
SNP	465	1450	NC_000913	3647428	T
SNP	466	1451	NC_000913	3647949	T
SNP	467	1452	NC_000913	3664594	A
SNP	468	1453	NC_000913	3665576	T
SNP	469	1454	NC_000913	3707883	A
SNP	470	1455	NC_000913	3707947	A
SNP	471	1456	NC_000913	3719429	A
SNP	472	1457	NC_000913	3725176	G
SUB	473	1458,1459	NC_000913	3729440	2	TT
SNP	474	1460	NC_000913	3730560	T
SNP	475	1461	NC_000913	3770539	T
DEL	476	1462	NC_000913	3773173	1
SNP	477	1463	NC_000913	3773176	T
INS	478	1464	NC_000913	3815883	C
SNP	479	1465	NC_000913	3834564	A
SNP	480	1469	NC_000913	3926991	A
SNP	481	1470	NC_000913	3931779	C
SUB	482	1471,1472	NC_000913	3966530	2	TT
SNP	483	1473	NC_000913	3967770	T
MOB	484	2051,2052	NC_000913	4124498	IS2	1	5
SNP	485	1475	NC_000913	4133252	T
SNP	486	1476	NC_000913	4215347	A
SNP	487	1477	NC_000913	4223638	C
SNP	488	1478	NC_000913	4226699	A
SNP	489	1479	NC_000913	4281093	A
SNP	490	1480	NC_000913	4283043	A
SNP	491	1481	NC_000913	4283465	A
SNP	492	1482	NC_000913	4284646	A
SNP	493	1483	NC_000913	4285238	A
SNP	494	1484	NC_000913	4288385	A
INS	495	1485,1486	NC_000913	4296381	GC
SNP	496	1487	NC_000913	4296428	A
SNP	497	1488	NC_000913	4297782	A
SNP	498	1489	NC_000913	4298401	A
SNP	499	1490	NC_000913	4306035	T
SNP	500	1491	NC_000913	4306960	A
SNP	501	1492	NC_000913	4307151	A
SNP	502	1493	NC_000913	4318215	A
SNP	503	1494	NC_000913	4320007	A
SNP	504	1495	NC_000913	4320344	A
SNP	505	1496	NC_000913	4320416	A
SNP	506	1497	NC_000913	4320543	A
SNP	507	1498	NC_000913	4321488	A
SNP	508	1499	NC_000913	4321603	C
SNP	509	1500	NC_000913	4322786	A
SNP	510	1501	NC_000913	4325644	T
SNP	511	1502	NC_000913	4328622	C
SNP	512	1503	NC_000913	4331890	T
SNP	513	1504	NC_000913	4340953	T
SNP	514	1505	NC_000913	4344501	A
SNP	515	1506	NC_000913	4344935	A
MOB	516	2043,2044	NC_000913	4365526	IS2	-1	5
SNP	517	1507	NC_000913	4390331	T
SNP	518	1508	NC_000913	4402938	A
SNP	519	1509	NC_000913	4410859	T
SNP	520	1510	NC_000913	4414192	A
SNP	521	1511	NC_000913	4430584	T
SNP	522	1512	NC_000913	4431220	T
SNP	523	1513	NC_000913	4437890	T
SNP	524	1514	NC_000913	4439578	A
SNP	525	1515	NC_000913	4440768	A
SNP	526	1516	NC_000913	4445315	T
SNP	527	1517	NC_000913	4445924	T
SNP	528	1518	NC_000913	4446482	T
SNP	529	1519	NC_000913	4448304	T
SNP	530	1520	NC_000913	4463952	A
SNP	531	1521	NC_000913	4473900	T
SNP	532	1522	NC_000913	4475493	C
SNP	533	1523	NC_000913	4476605	A
SNP	534	1524	NC_000913	4489016	T
SNP	535	1525	NC_000913	4492470	A
INS	536	1526	NC_000913	4492583	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	537	1527	NC_000913	4495194	T
SNP	538	1528	NC_000913	4496168	T
SNP	539	1529	NC_000913	4496885	A
SNP	540	1530	NC_000913	4507424	C
SNP	541	1556	NC_000913	4510238	G
SNP	542	1557	NC_000913	4512293	C
SNP	543	1558	NC_000913	4512501	T
SNP	544	1559	NC_000913	4512642	C
SNP	545	1560	NC_000913	4513044	C
SNP	546	1561	NC_000913	4513841	G
SNP	547	1562	NC_000913	4514139	C
SNP	548	1563	NC_000913	4514287	C
SNP	549	1564	NC_000913	4514983	C
SNP	550	1565	NC_000913	4515348	C
SNP	551	1566	NC_000913	4516110	T
SNP	552	1567	NC_000913	4516378	A
SNP	553	1568	NC_000913	4516632	C
SNP	554	1569	NC_000913	4516959	T
SNP	555	1570	NC_000913	4517127	A
SNP	556	1571	NC_000913	4518627	A
SNP	557	1572	NC_000913	4518681	C
SNP	558	1573	NC_000913	4518793	T
SNP	559	1574	NC_000913	4530252	A
SNP	560	1575	NC_000913	4532063	T
SNP	561	1576	NC_000913	4535073	G
SNP	562	1577	NC_000913	4535189	T
SNP	563	1578	NC_000913	4540111	G
SNP	564	1579	NC_000913	4540114	T
SNP	565	1580	NC_000913	4540431	C
MOB	566	2047,2049	NC_000913	4541425	IS1	-1	8
DEL	567	1581	NC_000913	4542683	1
INS	568	1582	NC_000913	4542692	A
SNP	569	1583	NC_000913	4543047	G
SNP	570	1584	NC_000913	4544464	T
SNP	571	1585	NC_000913	4546272	C
SNP	572	1586	NC_000913	4549223	G
SNP	573	1587	NC_000913	4553609	A
SNP	574	1588	NC_000913	4556917	G
SNP	575	1589	NC_000913	4560309	A
SNP	576	1590	NC_000913	4563567	C
SNP	577	1591	NC_000913	4564141	G
SNP	578	1592	NC_000913	4567272	A
SNP	579	1593	NC_000913	4569307	C
SNP	580	1594	NC_000913	4591674	G
SNP	581	1595	NC_000913	4591677	C
SNP	582	1596	NC_000913	4591930	C
SNP	583	1597	NC_000913	4591974	A
SNP	584	1598	NC_000913	4592082	A
SNP	585	1599	NC_000913	4592188	T
DEL	586	1600	NC_000913	4595570	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	587	1601	NC_000913	4602089	T
SNP	588	1602	NC_000913	4605702	C
SNP	589	1603	NC_000913	4605791	G
SNP	590	1604	NC_000913	4614170	T
SNP	591	1605	NC_000913	4616022	C
SNP	592	1606	NC_000913	4616073	C
SNP	593	1607	NC_000913	4616514	G
SNP	594	1608	NC_000913	4616535	G
SNP	595	1609	NC_000913	4616648	T
SNP	596	1610	NC_000913	4616682	T
SNP	597	1611	NC_000913	4617053	C
SNP	598	1612	NC_000913	4617138	A
SNP	599	1613	NC_000913	4617238	A
SNP	600	1614	NC_000913	4617409	A
SNP	601	1615	NC_000913	4617412	T
SNP	602	1616	NC_000913	4617415	T
SNP	603	1617	NC_000913	4617436	C
SNP	604	1618	NC_000913	4617499	A
SNP	605	1619	NC_000913	4617532	T
SNP	606	1620	NC_000913	4617565	T
SNP	607	1621	NC_000913	4617574	A
SNP	608	1622	NC_000913	4617616	C
SNP	609	1623	NC_000913	4617631	G
SNP	610	1624	NC_000913	4617928	A
SNP	611	1625	NC_000913	4617976	C
SNP	612	1626	NC_000913	4618030	T
SNP	613	1627	NC_000913	4618055	T
SNP	614	1628	NC_000913	4618069	C
SNP	615	1629	NC_000913	4618075	T
SNP	616	1630	NC_000913	4618276	A
SNP	617	1631	NC_000913	4618312	C
SNP	618	1632	NC_000913	4618483	T
SNP	619	1633	NC_000913	4618489	T
SNP	620	1634	NC_000913	4618702	C
SNP	621	1635	NC_000913	4618717	G
SNP	622	1636	NC_000913	4618804	G
SNP	623	1637	NC_000913	4619026	G
SNP	624	1638	NC_000913	4619080	T
SNP	625	1639	NC_000913	4619131	A
SNP	626	1640	NC_000913	4619134	A
SNP	627	1641	NC_000913	4619197	A
SNP	628	1642	NC_000913	4619335	T
SNP	629	1643	NC_000913	4619338	T
SNP	630	1644	NC_000913	4619359	T
SNP	631	1645	NC_000913	4619393	T
SNP	632	1646	NC_000913	4619454	G
SNP	633	1647	NC_000913	4619917	C
SNP	634	1648	NC_000913	4620067	G
SNP	635	1649	NC_000913	4620145	C
SNP	636	1650	NC_000913	4620150	G
SNP	637	1651	NC_000913	4620154	C
SNP	638	1652	NC_000913	4620157	T
SNP	639	1653	NC_000913	4620160	C
SNP	640	1654	NC_000913	4620223	C
SNP	641	1655	NC_000913	4620256	T
SNP	642	1656	NC_000913	4620358	T
SNP	643	1657	NC_000913	4620385	A
SNP	644	1658	NC_000913	4620415	G
SNP	645	1659	NC_000913	4620427	A
SNP	646	1660	NC_000913	4620559	T
SNP	647	1661	NC_000913	4620571	G
SNP	648	1662	NC_000913	4620637	T
SNP	649	1663	NC_000913	4620652	T
SNP	650	1664	NC_000913	4620706	T
SNP	651	1665	NC_000913	4620709	C
SNP	652	1666	NC_000913	4620742	C
SNP	653	1667	NC_000913	4620763	T
SNP	654	1668	NC_000913	4620766	T
SUB	655	2013,2054	NC_000913	4620828	43	AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT
SNP	656	1669	NC_000913	4621236	T
SNP	657	1670	NC_000913	4621278	T
SNP	658	1671	NC_000913	4621296	G
SNP	659	1672	NC_000913	4621302	C
SNP	660	1673	NC_000913	4621305	G
SNP	661	1674	NC_000913	4621321	G
SNP	662	1675	NC_000913	4621410	C
SNP	663	1676	NC_000913	4621458	G
SNP	664	1677	NC_000913	4621491	G
SNP	665	1678	NC_000913	4621542	C
SNP	666	1679	NC_000913	4621627	T
SNP	667	1680	NC_000913	4621629	G
SNP	668	1681	NC_000913	4621633	T
SNP	669	1682	NC_000913	4621644	A
SNP	670	1683	NC_000913	4623110	C
SNP	671	1684	NC_000913	4623119	T
SNP	672	1685	NC_000913	4623125	C
SNP	673	1686	NC_000913	4623127	T
SNP	674	1687	NC_000913	4623131	C
SNP	675	1688	NC_000913	4623136	T
SNP	676	1689	NC_000913	4623155	G
SNP	677	1690	NC_000913	4623188	T
SNP	678	1691	NC_000913	4623203	C
SNP	679	1692	NC_000913	4623230	C
SNP	680	1693	NC_000913	4623336	C
SNP	681	1694	NC_000913	4623404	A
SNP	682	1695	NC_000913	4623448	C
SNP	683	1696	NC_000913	4623470	T
SNP	684	1697	NC_000913	4623473	A
SNP	685	1698	NC_000913	4623502	T
SNP	686	1699	NC_000913	4623544	G
SNP	687	1700	NC_000913	4623575	C
SNP	688	1701	NC_000913	4623578	T
SNP	689	1702	NC_000913	4623581	G
SNP	690	1703	NC_000913	4623641	A
SNP	691	1704	NC_000913	4623656	C
SNP	692	1705	NC_000913	4623680	A
SNP	693	1706	NC_000913	4623707	T
SNP	694	1707	NC_000913	4623732	G
SNP	695	1708	NC_000913	4623758	C
SNP	696	1709	NC_000913	4623782	A
SNP	697	1710	NC_000913	4623821	G
SNP	698	1711	NC_000913	4623911	T
SNP	699	1712	NC_000913	4623983	C
SNP	700	1713	NC_000913	4624037	C
SNP	701	1714	NC_000913	4624055	C
SNP	702	1715	NC_000913	4624226	A
SNP	703	1716	NC_000913	4624262	G
SNP	704	1717	NC_000913	4624277	A
SNP	705	1718	NC_000913	4624355	C
SNP	706	1719	NC_000913	4624388	C
SNP	707	1720	NC_000913	4624391	G
SNP	708	1721	NC_000913	4624400	T
SNP	709	1722	NC_000913	4624430	C
SNP	710	1723	NC_000913	4624487	G
SNP	711	1724	NC_000913	4624517	G
SNP	712	1725	NC_000913	4624586	C
SNP	713	1726	NC_000913	4624622	T
SNP	714	1727	NC_000913	4624670	T
SNP	715	1728	NC_000913	4625044	G
SNP	716	1729	NC_000913	4625158	G
SNP	717	1730	NC_000913	4625170	T
SNP	718	1731	NC_000913	4625179	A
SNP	719	1732	NC_000913	4625242	C
SNP	720	1733	NC_000913	4625248	T
SNP	721	1734	NC_000913	4625377	C
SNP	722	1735	NC_000913	4625533	T
SNP	723	1736	NC_000913	4625546	T
SNP	724	1737	NC_000913	4626042	C
SNP	725	1738	NC_000913	4626245	T
SNP	726	1739	NC_000913	4626247	G
SNP	727	1740	NC_000913	4626391	G
SNP	728	1741	NC_000913	4626487	C
SNP	729	1742	NC_000913	4626521	C
SNP	730	1743	NC_000913	4626526	G
SNP	731	1744	NC_000913	4626565	T
SNP	732	1745	NC_000913	4626568	A
SNP	733	1746	NC_000913	4626586	C
SNP	734	1747	NC_000913	4626595	G
SNP	735	1748	NC_000913	4626601	T
SNP	736	1749	NC_000913	4626670	T
SNP	737	1750	NC_000913	4626673	A
SNP	738	1751	NC_000913	4626784	A
SNP	739	1752	NC_000913	4626802	C
SNP	740	1753	NC_000913	4626808	C
SNP	741	1754	NC_000913	4626820	G
SUB	742	1755,1756	NC_000913	4626838	2	GT
SNP	743	1757	NC_000913	4626886	T
SNP	744	1758	NC_000913	4626889	G
SNP	745	1759	NC_000913	4626943	C
SNP	746	1760	NC_000913	4627027	C
SNP	747	1761	NC_000913	4627069	T
SNP	748	1762	NC_000913	4627084	A
SNP	749	1763	NC_000913	4627159	T
SNP	750	1764	NC_000913	4627162	A
SNP	751	1765	NC_000913	4627213	A
SUB	752	1766,1767	NC_000913	4627299	2	GA
SNP	753	1768	NC_000913	4627377	G
SNP	754	1769	NC_000913	4627509	C
SNP	755	1770	NC_000913	4627512	T
SNP	756	1771	NC_000913	4627518	G
SNP	757	1772	NC_000913	4627539	G
SNP	758	1773	NC_000913	4627593	A
SNP	759	1774	NC_000913	4627626	C
SNP	760	1775	NC_000913	4627629	T
SNP	761	1776	NC_000913	4627641	T
SNP	762	1777	NC_000913	4627650	C
SNP	763	1778	NC_000913	4627653	T
SNP	764	1779	NC_000913	4627668	C
SNP	765	1780	NC_000913	4627689	C
SNP	766	1781	NC_000913	4627698	A
SNP	767	1782	NC_000913	4627818	G
SNP	768	1783	NC_000913	4627824	T
SNP	769	1784	NC_000913	4627833	C
SNP	770	1785	NC_000913	4627893	T
SNP	771	1786	NC_000913	4627986	G
SNP	772	1787	NC_000913	4628001	C
SNP	773	1788	NC_000913	4628007	A
SNP	774	1789	NC_000913	4628028	T
SNP	775	1790	NC_000913	4628082	T
SNP	776	1791	NC_000913	4628106	T
SNP	777	1792	NC_000913	4628160	C
SNP	778	1793	NC_000913	4628163	T
SNP	779	1794	NC_000913	4628190	A
SNP	780	1795	NC_000913	4628208	A
SNP	781	1796	NC_000913	4628232	G
SNP	782	1797	NC_000913	4628238	T
SNP	783	1798	NC_000913	4628241	C
SNP	784	1799	NC_000913	4628244	T
SNP	785	1800	NC_000913	4628256	T
SNP	786	1801	NC_000913	4628259	C
SNP	787	1802	NC_000913	4628289	T
SNP	788	1803	NC_000913	4628292	G
SNP	789	1804	NC_000913	4628304	A
SNP	790	1805	NC_000913	4628311	T
SNP	791	1806	NC_000913	4628442	G
SNP	792	1807	NC_000913	4628463	C
SNP	793	1808	NC_000913	4628481	C
SNP	794	1809	NC_000913	4628487	T
SNP	795	1810	NC_000913	4628493	C
SNP	796	1811	NC_000913	4628514	G
SNP	797	1812	NC_000913	4628551	C
SNP	798	1813	NC_000913	4628560	G
SNP	799	1814	NC_000913	4628583	A
DEL	800	1815	NC_000913	4628592	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	801	1816	NC_000913	4628668	T
SNP	802	1817	NC_000913	4628678	C
SNP	803	1818	NC_000913	4628683	A
SNP	804	1819	NC_000913	4628699	G
SNP	805	1820	NC_000913	4628707	A
SNP	806	1821	NC_000913	4628710	C
SNP	807	1822	NC_000913	4628721	T
SUB	808	1823,1824	NC_000913	4628778	2	GG
SNP	809	1825	NC_000913	4628782	A
SNP	810	1826	NC_000913	4628785	C
SNP	811	1827	NC_000913	4628802	T
SNP	812	1828	NC_000913	4628805	T
SNP	813	1829	NC_000913	4628807	G
SNP	814	1830	NC_000913	4628831	A
SNP	815	1831	NC_000913	4628897	T
SNP	816	1832	NC_000913	4628939	A
SNP	817	1833	NC_000913	4628984	G
SNP	818	1834	NC_000913	4628990	G
SNP	819	1835	NC_000913	4629188	A
SNP	820	1836	NC_000913	4629281	A
SNP	821	1837	NC_000913	4629356	T
SNP	822	1838	NC_000913	4629377	T
SNP	823	1839	NC_000913	4629446	G
SNP	824	1840	NC_000913	4629473	T
SNP	825	1841	NC_000913	4629476	C
SNP	826	1842	NC_000913	4629515	G
SNP	827	1843	NC_000913	4629521	A
SNP	828	1844	NC_000913	4629524	G
SNP	829	1845	NC_000913	4629635	C
SNP	830	1846	NC_000913	4629647	T
SNP	831	1847	NC_000913	4629674	G
SNP	832	1848	NC_000913	4629686	T
SNP	833	1849	NC_000913	4629689	C
SNP	834	1850	NC_000913	4629701	C
SNP	835	1851	NC_000913	4629716	G
SNP	836	1852	NC_000913	4629797	G
SNP	837	1853	NC_000913	4629887	C
SNP	838	1854	NC_000913	4629896	C
SNP	839	1855	NC_000913	4630022	C
SNP	840	1856	NC_000913	4630106	G
SNP	841	1857	NC_000913	4630238	A
SNP	842	1858	NC_000913	4630304	G
SNP	843	1859	NC_000913	4630385	A
SNP	844	1860	NC_000913	4630400	G
SNP	845	1861	NC_000913	4630553	G
SUB	846	1862,1863	NC_000913	4630602	2	TT
SNP	847	1864	NC_000913	4630615	T
SNP	848	1865	NC_000913	4630837	C
SNP	849	1866	NC_000913	4630912	A
SNP	850	1867	NC_000913	4630921	A
SNP	851	1868	NC_000913	4630945	T
SNP	852	1869	NC_000913	4630960	C
SNP	853	1870	NC_000913	4630984	T
SNP	854	1871	NC_000913	4631146	A
SNP	855	1872	NC_000913	4631245	T
SNP	856	1873	NC_000913	4631323	T
SNP	857	1874	NC_000913	4634882	T
SNP	858	1875	NC_000913	4635658	C
SNP	859	1876	NC_000913	4635706	A
SNP	860	1877	NC_000913	4635757	T
SNP	861	1878	NC_000913	4635889	C
SNP	862	1879	NC_000913	4636139	C
SUB	863	1880,1881	NC_000913	4636146	2	CT
SNP	864	1882	NC_000913	4636175	T
SNP	865	1883	NC_000913	4636180	T
SNP	866	1884	NC_000913	4636186	C
SNP	867	1885	NC_000913	4636201	A
SNP	868	1886	NC_000913	4636309	T
SNP	869	1887	NC_000913	4636385	T
SNP	870	1888	NC_000913	4636411	T
SNP	871	1889	NC_000913	4636466	A
SNP	872	1890	NC_000913	4636474	G
SNP	873	1891	NC_000913	4636493	C
SNP	874	1892	NC_000913	4636513	G
SNP	875	1893	NC_000913	4636516	A
SNP	876	1894	NC_000913	4636543	A
SNP	877	1895	NC_000913	4636555	G
SNP	878	1896	NC_000913	4636591	T
SNP	879	1897	NC_000913	4636610	T
SNP	880	1898	NC_000913	4636717	C
SNP	881	1899	NC_000913	4636749	G
SNP	882	1900	NC_000913	4636767	T
SNP	883	1901	NC_000913	4636821	A
SNP	884	1902	NC_000913	4636827	T
SNP	885	1903	NC_000913	4636993	T
SNP	886	1904	NC_000913	4637001	T
SNP	887	1905	NC_000913	4637037	G
SNP	888	1906	NC_000913	4637133	G
SNP	889	1907	NC_000913	4637151	G
SNP	890	1908	NC_000913	4637269	C
SNP	891	1909	NC_000913	4637322	C
SNP	892	1910	NC_000913	4637346	C
SNP	893	1911	NC_000913	4637379	T
SNP	894	1912	NC_000913	4637382	T
SNP	895	1913	NC_000913	4637385	A
SNP	896	1914	NC_000913	4637391	C
SNP	897	1915	NC_000913	4637409	G
SNP	898	1916	NC_000913	4637412	T
SNP	899	1917	NC_000913	4637478	T
SNP	900	1918	NC_000913	4637481	G
SNP	901	1919	NC_000913	4637487	C
SNP	902	1920	NC_000913	4637523	C
SNP	903	1921	NC_000913	4637553	A
SNP	904	1922	NC_000913	4637577	C
SNP	905	1923	NC_000913	4637675	T
SNP	906	1924	NC_000913	4637697	T
SNP	907	1925	NC_000913	4637742	C
SNP	908	1926	NC_000913	4637751	A
SNP	909	1927	NC_000913	4637759	T
SNP	910	1928	NC_000913	4637766	T
SNP	911	1929	NC_000913	4637775	T
SNP	912	1930	NC_000913	4637814	G
SNP	913	1931	NC_000913	4637857	C
SNP	914	1932	NC_000913	4637862	A
SNP	915	1933	NC_000913	4637896	G
SNP	916	1934	NC_000913	4637898	C
SNP	917	1935	NC_000913	4637943	G
SNP	918	1936	NC_000913	4637976	G
SNP	919	1937	NC_000913	4638142	C
SNP	920	1938	NC_000913	4638210	C
SNP	921	1939	NC_000913	4638212	C
SNP	922	1940	NC_000913	4638214	T
SNP	923	1941	NC_000913	4638264	A
SNP	924	1942	NC_000913	4638282	C
SNP	925	1943	NC_000913	4638354	T
SNP	926	1944	NC_000913	4638532	C
SNP	927	1945	NC_000913	4638567	G
SNP	928	1946	NC_000913	4638587	T
SNP	929	1947	NC_000913	4638600	C
SNP	930	1948	NC_000913	4638735	C
SNP	931	1949	NC_000913	4638818	C
SNP	932	1950	NC_000913	4638883	T
SNP	933	1951	NC_000913	4638885	G
SNP	934	1952	NC_000913	4638927	A
SNP	935	1953	NC_000913	4639005	C
SNP	936	1954	NC_000913	4639023	G
SNP	937	1955	NC_000913	4639053	G
SNP	938	1956	NC_000913	4639217	T
SNP	939	1957	NC_000913	4639261	T
SNP	940	1958	NC_000913	4639284	G
SNP	941	1959	NC_000913	4639299	C
SNP	942	1960	NC_000913	4639303	C
SNP	943	1961	NC_000913	4639440	T
SNP	944	1962	NC_000913	4639502	T
SNP	945	1963	NC_000913	4639510	C
SNP	946	1964	NC_000913	4639512	A
SNP	947	1965	NC_000913	4639608	A
SNP	948	1966	NC_000913	4639632	G
SNP	949	1967	NC_000913	4639719	T
SNP	950	1968	NC_000913	4639764	A
SNP	951	1969	NC_000913	4639956	C
SNP	952	1970	NC_000913	4640785	T
SNP	953	1971	NC_000913	4640864	G
SNP	954	1972	NC_000913	4640908	T
SNP	955	1973	NC_000913	4640924	G
SNP	956	1974	NC_000913	4641022	T
SNP	957	1975	NC_000913	4641031	A
SNP	958	1976	NC_000913	4641131	C
SNP	959	1977	NC_000913	4641208	T
SNP	960	1978	NC_000913	4641217	A
SNP	961	1979	NC_000913	4641226	A
SNP	962	1980	NC_000913	4641296	C
SNP	963	1981	NC_000913	4641352	A
SNP	964	1982	NC_000913	4641382	A
SNP	965	1983	NC_000913	4641428	A
SUB	966	1984,1985	NC_000913	4641439	2	CA
SNP	967	1986	NC_000913	4641483	T
SNP	968	1987	NC_000913	4641488	G
SNP	969	1988	NC_000913	4641544	G
RA	970	.	NC_000913	310	0	T	.	bias_e_value=2033880	bias_p_value=0.43818	consensus_score=91.8	fisher_strand_p_value=0.188034	frequency=1	ks_quality_p_value=0.807887	major_base=.	major_cov=15/10	major_frequency=9.259e-01	minor_base=T	minor_cov=0/2	new_cov=15/10	polymorphism_frequency=9.259e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=0/2	total_cov=15/13
RA	971	.	NC_000913	393	0	T	G	bias_e_value=3862340	bias_p_value=0.832104	consensus_score=81.2	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.991435	major_base=G	major_cov=16/14	major_frequency=9.677e-01	minor_base=T	minor_cov=0/1	new_cov=16/14	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=16/15
RA	972	.	NC_000913	588	0	G	A	bias_e_value=4634360	bias_p_value=0.998428	consensus_score=102.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.944459	major_base=A	major_cov=18/17	major_frequency=9.722e-01	minor_base=C	minor_cov=0/1	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	973	.	NC_000913	774	0	T	C	bias_e_value=4491520	bias_p_value=0.967656	consensus_score=116.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.756687	major_base=C	major_cov=28/9	major_frequency=9.737e-01	minor_base=T	minor_cov=1/0	new_cov=28/9	polymorphism_frequency=9.737e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=29/9
RA	974	.	NC_000913	867	0	C	T	bias_e_value=3715040	bias_p_value=0.800371	consensus_score=77.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.438953	major_base=T	major_cov=26/0	major_frequency=9.630e-01	minor_base=C	minor_cov=1/0	new_cov=26/0	polymorphism_frequency=9.630e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=28/0
RA	975	.	NC_000913	939	0	G	A	bias_e_value=1729290	bias_p_value=0.37256	consensus_score=70.5	fisher_strand_p_value=0.206349	frequency=1	ks_quality_p_value=0.577267	major_base=A	major_cov=24/2	major_frequency=9.286e-01	minor_base=G	minor_cov=1/1	new_cov=24/2	polymorphism_frequency=9.286e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=26/4
RA	976	.	NC_000913	966	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=90.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=23/6	major_frequency=9.667e-01	minor_base=A	minor_cov=1/0	new_cov=23/6	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/6
RA	977	.	NC_000913	969	0	T	G	bias_e_value=3201380	bias_p_value=0.689708	consensus_score=79.4	fisher_strand_p_value=0.365517	frequency=1	ks_quality_p_value=0.887766	major_base=G	major_cov=23/5	major_frequency=9.333e-01	minor_base=T	minor_cov=1/1	new_cov=23/5	polymorphism_frequency=9.333e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/1	total_cov=24/6
RA	978	.	NC_000913	1206	0	A	T	bias_e_value=4641610	bias_p_value=0.99999	consensus_score=124.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99558	major_base=T	major_cov=15/27	major_frequency=9.767e-01	minor_base=C	minor_cov=0/1	new_cov=15/27	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/29
RA	979	.	NC_000913	1278	0	C	T	bias_e_value=4563120	bias_p_value=0.983081	consensus_score=123.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.821779	major_base=T	major_cov=20/21	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=20/21	polymorphism_frequency=9.762e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=21/22
RA	980	.	NC_000913	1299	0	T	C	bias_e_value=4639740	bias_p_value=0.999588	consensus_score=141.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971431	major_base=C	major_cov=24/22	major_frequency=9.583e-01	minor_base=T	minor_cov=1/1	new_cov=24/22	polymorphism_frequency=9.583e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/1	total_cov=27/23
RA	981	.	NC_000913	1302	0	T	C	bias_e_value=4083300	bias_p_value=0.879709	consensus_score=149.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.551506	major_base=C	major_cov=26/23	major_frequency=9.800e-01	minor_base=T	minor_cov=1/0	new_cov=26/23	polymorphism_frequency=9.800e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=27/23
RA	982	.	NC_000913	1323	0	C	T	bias_e_value=4236170	bias_p_value=0.912643	consensus_score=160.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.61228	major_base=T	major_cov=28/24	major_frequency=9.811e-01	minor_base=C	minor_cov=1/0	new_cov=28/24	polymorphism_frequency=9.811e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=29/24
RA	983	.	NC_000913	1341	0	C	G	bias_e_value=3893230	bias_p_value=0.83876	consensus_score=148.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.488907	major_base=G	major_cov=28/25	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=29/25
RA	984	.	NC_000913	1407	0	C	T	bias_e_value=4377710	bias_p_value=0.943136	consensus_score=157.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.682307	major_base=T	major_cov=29/25	major_frequency=9.643e-01	minor_base=C	minor_cov=1/1	new_cov=29/25	polymorphism_frequency=9.643e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=31/27
RA	985	.	NC_000913	1425	0	A	G	bias_e_value=4145590	bias_p_value=0.893129	consensus_score=149.6	fisher_strand_p_value=0.617364	frequency=1	ks_quality_p_value=0.931181	major_base=G	major_cov=27/24	major_frequency=9.273e-01	minor_base=A	minor_cov=3/1	new_cov=27/24	polymorphism_frequency=9.273e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=3/1	total_cov=31/25
RA	986	.	NC_000913	1509	0	A	G	bias_e_value=2424320	bias_p_value=0.522296	consensus_score=166.3	fisher_strand_p_value=0.633948	frequency=1	ks_quality_p_value=0.315884	major_base=G	major_cov=32/24	major_frequency=9.333e-01	minor_base=A	minor_cov=3/1	new_cov=32/24	polymorphism_frequency=9.333e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=3/1	total_cov=35/25
RA	987	.	NC_000913	1593	0	A	G	bias_e_value=4256150	bias_p_value=0.916947	consensus_score=121.3	fisher_strand_p_value=0.621184	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=24/20	major_frequency=9.167e-01	minor_base=A	minor_cov=3/1	new_cov=24/20	polymorphism_frequency=9.167e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=3/1	total_cov=28/21
RA	988	.	NC_000913	1797	0	G	A	bias_e_value=4627520	bias_p_value=0.996956	consensus_score=134.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.922998	major_base=A	major_cov=19/29	major_frequency=9.231e-01	minor_base=G	minor_cov=1/3	new_cov=19/29	polymorphism_frequency=9.231e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=1/3	total_cov=20/32
RA	989	.	NC_000913	1860	0	T	A	bias_e_value=4538830	bias_p_value=0.977849	consensus_score=142.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.797039	major_base=A	major_cov=20/28	major_frequency=8.889e-01	minor_base=T	minor_cov=2/4	new_cov=20/28	polymorphism_frequency=8.889e-01	polymorphism_score=6.4	prediction=consensus	ref_cov=2/4	total_cov=22/32
RA	990	.	NC_000913	1875	0	A	G	bias_e_value=4628090	bias_p_value=0.997078	consensus_score=159.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.924531	major_base=G	major_cov=24/30	major_frequency=9.153e-01	minor_base=A	minor_cov=2/3	new_cov=24/30	polymorphism_frequency=9.153e-01	polymorphism_score=3.7	prediction=consensus	ref_cov=2/3	total_cov=26/33
RA	991	.	NC_000913	1884	0	T	A	bias_e_value=4345340	bias_p_value=0.936163	consensus_score=157.7	fisher_strand_p_value=0.690806	frequency=1	ks_quality_p_value=0.962163	major_base=A	major_cov=22/28	major_frequency=8.929e-01	minor_base=T	minor_cov=2/4	new_cov=22/28	polymorphism_frequency=8.929e-01	polymorphism_score=8.3	prediction=consensus	ref_cov=2/4	total_cov=24/32
RA	992	.	NC_000913	2038	0	C	T	bias_e_value=3302270	bias_p_value=0.711442	consensus_score=170.5	fisher_strand_p_value=0.363636	frequency=1	ks_quality_p_value=0.946915	major_base=T	major_cov=19/35	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=19/35	polymorphism_frequency=9.818e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=20/35
RA	993	.	NC_000913	2108	0	A	T	bias_e_value=2611710	bias_p_value=0.562669	consensus_score=159.2	fisher_strand_p_value=0.49899	frequency=1	ks_quality_p_value=0.453666	major_base=T	major_cov=24/29	major_frequency=9.636e-01	minor_base=A	minor_cov=0/2	new_cov=24/29	polymorphism_frequency=9.636e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=0/2	total_cov=24/31
RA	994	.	NC_000913	2116	0	T	C	bias_e_value=3119950	bias_p_value=0.672164	consensus_score=148.3	fisher_strand_p_value=0.50905	frequency=1	ks_quality_p_value=0.607465	major_base=C	major_cov=21/29	major_frequency=9.615e-01	minor_base=T	minor_cov=0/2	new_cov=21/29	polymorphism_frequency=9.615e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/2	total_cov=21/31
RA	995	.	NC_000913	2211	0	A	T	bias_e_value=3577880	bias_p_value=0.770821	consensus_score=145.0	fisher_strand_p_value=0.64112	frequency=1	ks_quality_p_value=0.631284	major_base=T	major_cov=19/27	major_frequency=9.200e-01	minor_base=A	minor_cov=1/3	new_cov=19/27	polymorphism_frequency=9.200e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=1/3	total_cov=20/30
RA	996	.	NC_000913	2247	0	T	A	bias_e_value=2839410	bias_p_value=0.611724	consensus_score=141.2	fisher_strand_p_value=0.362198	frequency=1	ks_quality_p_value=0.720887	major_base=A	major_cov=21/23	major_frequency=8.980e-01	minor_base=T	minor_cov=1/4	new_cov=21/23	polymorphism_frequency=8.980e-01	polymorphism_score=6.0	prediction=consensus	ref_cov=1/4	total_cov=22/27
RA	997	.	NC_000913	2307	0	C	T	bias_e_value=3671090	bias_p_value=0.790901	consensus_score=133.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.427631	major_base=T	major_cov=24/20	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=24/20	polymorphism_frequency=9.778e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=25/20
RA	998	.	NC_000913	2310	0	G	T	bias_e_value=4173810	bias_p_value=0.899208	consensus_score=141.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586054	major_base=T	major_cov=24/20	major_frequency=9.778e-01	minor_base=G	minor_cov=1/0	new_cov=24/20	polymorphism_frequency=9.778e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=25/20
RA	999	.	NC_000913	2343	0	C	T	bias_e_value=3401240	bias_p_value=0.732765	consensus_score=114.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.364897	major_base=T	major_cov=21/19	major_frequency=9.302e-01	minor_base=C	minor_cov=2/1	new_cov=21/19	polymorphism_frequency=9.302e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=23/21
RA	1000	.	NC_000913	2373	0	G	A	bias_e_value=4457720	bias_p_value=0.960374	consensus_score=108.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.732027	major_base=A	major_cov=20/18	major_frequency=9.268e-01	minor_base=G	minor_cov=2/1	new_cov=20/18	polymorphism_frequency=9.268e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=2/1	total_cov=22/19
RA	1001	.	NC_000913	2382	0	A	G	bias_e_value=4183770	bias_p_value=0.901353	consensus_score=119.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.590095	major_base=G	major_cov=20/19	major_frequency=9.286e-01	minor_base=A	minor_cov=2/1	new_cov=20/19	polymorphism_frequency=9.286e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=22/20
RA	1002	.	NC_000913	2469	0	C	T	bias_e_value=4506530	bias_p_value=0.970889	consensus_score=111.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.768621	major_base=T	major_cov=25/13	major_frequency=9.500e-01	minor_base=C	minor_cov=1/1	new_cov=25/13	polymorphism_frequency=9.500e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/1	total_cov=26/14
RA	1003	.	NC_000913	2508	0	A	G	bias_e_value=2180580	bias_p_value=0.469785	consensus_score=100.8	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=0.391238	major_base=G	major_cov=21/15	major_frequency=9.730e-01	minor_base=A	minor_cov=0/1	new_cov=21/15	polymorphism_frequency=9.730e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=22/17
RA	1004	.	NC_000913	2595	0	C	T	bias_e_value=2812140	bias_p_value=0.60585	consensus_score=93.8	fisher_strand_p_value=0.256757	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/15	major_frequency=9.189e-01	minor_base=G	minor_cov=3/0	new_cov=19/15	polymorphism_frequency=9.189e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=22/16
RA	1005	.	NC_000913	2597	0	T	C	bias_e_value=1989820	bias_p_value=0.428689	consensus_score=97.6	fisher_strand_p_value=0.405405	frequency=1	ks_quality_p_value=0.362397	major_base=C	major_cov=22/14	major_frequency=9.730e-01	minor_base=T	minor_cov=0/1	new_cov=22/14	polymorphism_frequency=9.730e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=22/16
RA	1006	.	NC_000913	2676	0	C	T	bias_e_value=1719640	bias_p_value=0.370481	consensus_score=123.7	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=0.261159	major_base=T	major_cov=23/18	major_frequency=9.762e-01	minor_base=C	minor_cov=0/1	new_cov=23/18	polymorphism_frequency=9.762e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=23/19
RA	1007	.	NC_000913	2709	0	A	G	bias_e_value=3857740	bias_p_value=0.831113	consensus_score=115.4	fisher_strand_p_value=0.487805	frequency=1	ks_quality_p_value=0.980677	major_base=G	major_cov=19/21	major_frequency=9.756e-01	minor_base=T	minor_cov=1/0	new_cov=19/21	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	1008	.	NC_000913	2760	0	T	C	consensus_score=151.2	frequency=1	major_base=C	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	1009	.	NC_000913	3025	0	A	G	consensus_score=151.5	frequency=1	major_base=G	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	1010	.	NC_000913	3028	0	G	T	bias_e_value=3925660	bias_p_value=0.845746	consensus_score=160.3	fisher_strand_p_value=0.499608	frequency=1	ks_quality_p_value=0.998401	major_base=T	major_cov=22/27	major_frequency=9.608e-01	minor_base=G	minor_cov=0/2	new_cov=22/27	polymorphism_frequency=9.608e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=22/29
RA	1011	.	NC_000913	3031	0	T	C	bias_e_value=3685770	bias_p_value=0.794063	consensus_score=168.9	fisher_strand_p_value=0.431373	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=21/29	major_frequency=9.804e-01	minor_base=A	minor_cov=1/0	new_cov=21/29	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	1012	.	NC_000913	3055	0	C	T	bias_e_value=4641630	bias_p_value=0.999994	consensus_score=149.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996604	major_base=T	major_cov=22/26	major_frequency=9.796e-01	minor_base=G	minor_cov=0/1	new_cov=22/26	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/27
RA	1013	.	NC_000913	3073	0	G	A	consensus_score=173.0	frequency=1	major_base=A	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	1014	.	NC_000913	3097	0	T	C	bias_e_value=4641360	bias_p_value=0.999938	consensus_score=161.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988881	major_base=C	major_cov=25/28	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=25/28	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1015	.	NC_000913	3142	0	C	T	consensus_score=155.2	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1016	.	NC_000913	3196	0	C	A	bias_e_value=3821990	bias_p_value=0.823411	consensus_score=152.0	fisher_strand_p_value=0.468085	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/25	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=21/25	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=22/25
RA	1017	.	NC_000913	3199	0	T	A	consensus_score=153.9	frequency=1	major_base=A	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	1018	.	NC_000913	3244	0	C	T	consensus_score=166.5	frequency=1	major_base=T	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	1019	.	NC_000913	3424	0	A	T	bias_e_value=4635430	bias_p_value=0.99866	consensus_score=187.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.948676	major_base=T	major_cov=31/29	major_frequency=9.677e-01	minor_base=A	minor_cov=1/1	new_cov=31/29	polymorphism_frequency=9.677e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=32/30
RA	1020	.	NC_000913	3520	0	A	T	bias_e_value=3975970	bias_p_value=0.856585	consensus_score=191.8	fisher_strand_p_value=0.514754	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=9.672e-01	minor_base=G	minor_cov=0/2	new_cov=24/35	polymorphism_frequency=9.672e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=1/1	total_cov=25/38
RA	1021	.	NC_000913	3547	0	C	T	bias_e_value=4280500	bias_p_value=0.922193	consensus_score=182.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.632414	major_base=T	major_cov=21/37	major_frequency=9.831e-01	minor_base=C	minor_cov=0/1	new_cov=21/37	polymorphism_frequency=9.831e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=21/39
RA	1022	.	NC_000913	3622	0	A	T	bias_e_value=4562410	bias_p_value=0.982928	consensus_score=136.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.821	major_base=T	major_cov=14/36	major_frequency=9.434e-01	minor_base=A	minor_cov=1/2	new_cov=14/36	polymorphism_frequency=9.434e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=15/38
RA	1023	.	NC_000913	3763	0	C	T	bias_e_value=2429380	bias_p_value=0.523387	consensus_score=67.7	fisher_strand_p_value=0.268298	frequency=1	ks_quality_p_value=0.748916	major_base=T	major_cov=6/21	major_frequency=8.710e-01	minor_base=C	minor_cov=2/2	new_cov=6/21	polymorphism_frequency=8.710e-01	polymorphism_score=3.8	prediction=consensus	ref_cov=2/2	total_cov=9/24
RA	1024	.	NC_000913	3937	0	A	G	bias_e_value=3796470	bias_p_value=0.817914	consensus_score=114.1	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.998651	major_base=G	major_cov=17/21	major_frequency=9.744e-01	minor_base=A	minor_cov=1/0	new_cov=17/21	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/21
RA	1025	.	NC_000913	4102	0	T	C	bias_e_value=4630530	bias_p_value=0.997604	consensus_score=125.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.931578	major_base=C	major_cov=25/17	major_frequency=9.767e-01	minor_base=T	minor_cov=1/0	new_cov=25/17	polymorphism_frequency=9.767e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=1/0	total_cov=26/17
RA	1026	.	NC_000913	4336	0	A	G	bias_e_value=4454180	bias_p_value=0.95961	consensus_score=172.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.729591	major_base=G	major_cov=29/27	major_frequency=9.655e-01	minor_base=A	minor_cov=1/1	new_cov=29/27	polymorphism_frequency=9.655e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=30/28
RA	1027	.	NC_000913	4351	0	A	G	bias_e_value=2382120	bias_p_value=0.513206	consensus_score=168.2	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.404275	major_base=G	major_cov=28/25	major_frequency=9.815e-01	minor_base=A	minor_cov=0/1	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=28/26
RA	1028	.	NC_000913	4363	0	G	A	bias_e_value=1962340	bias_p_value=0.422767	consensus_score=156.1	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=0.299202	major_base=A	major_cov=27/24	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=27/24	polymorphism_frequency=9.808e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=27/25
RA	1029	.	NC_000913	4420	0	T	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=126.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998893	major_base=A	major_cov=22/20	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=22/20	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=23/21
RA	1030	.	NC_000913	4441	0	G	A	bias_e_value=4449050	bias_p_value=0.958506	consensus_score=128.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.726117	major_base=A	major_cov=19/23	major_frequency=9.767e-01	minor_base=G	minor_cov=0/1	new_cov=19/23	polymorphism_frequency=9.767e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=19/24
RA	1031	.	NC_000913	4442	0	A	G	bias_e_value=4356220	bias_p_value=0.938507	consensus_score=131.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.670469	major_base=G	major_cov=19/23	major_frequency=9.767e-01	minor_base=A	minor_cov=0/1	new_cov=19/23	polymorphism_frequency=9.767e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=19/24
RA	1032	.	NC_000913	4780	0	T	C	bias_e_value=3581450	bias_p_value=0.771589	consensus_score=202.2	fisher_strand_p_value=0.568271	frequency=1	ks_quality_p_value=0.713705	major_base=C	major_cov=27/39	major_frequency=9.565e-01	minor_base=T	minor_cov=2/1	new_cov=27/39	polymorphism_frequency=9.565e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/1	total_cov=29/40
RA	1033	.	NC_000913	4804	0	T	G	bias_e_value=2814140	bias_p_value=0.60628	consensus_score=188.9	fisher_strand_p_value=0.372551	frequency=1	ks_quality_p_value=0.690034	major_base=G	major_cov=24/40	major_frequency=9.275e-01	minor_base=T	minor_cov=3/2	new_cov=24/40	polymorphism_frequency=9.275e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=3/2	total_cov=27/42
RA	1034	.	NC_000913	4822	0	T	C	bias_e_value=3751230	bias_p_value=0.808167	consensus_score=207.0	fisher_strand_p_value=0.564211	frequency=1	ks_quality_p_value=0.795001	major_base=C	major_cov=26/39	major_frequency=9.559e-01	minor_base=T	minor_cov=2/1	new_cov=26/39	polymorphism_frequency=9.559e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/1	total_cov=28/40
RA	1035	.	NC_000913	5067	0	C	.	bias_e_value=4021690	bias_p_value=0.866436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.4	fisher_strand_p_value=0.640405	frequency=7.826e-01	ks_quality_p_value=0.827479	major_base=.	major_cov=10/8	major_frequency=7.826e-01	minor_base=C	minor_cov=2/3	new_cov=10/8	polymorphism_frequency=7.826e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=2/3	total_cov=12/11
RA	1036	.	NC_000913	5099	0	T	C	bias_e_value=4635550	bias_p_value=0.998685	consensus_score=51.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.949164	major_base=C	major_cov=9/11	major_frequency=8.696e-01	minor_base=T	minor_cov=1/2	new_cov=9/11	polymorphism_frequency=8.696e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=1/2	total_cov=10/13
RA	1037	.	NC_000913	5171	0	C	T	bias_e_value=3682690	bias_p_value=0.793401	consensus_score=107.6	fisher_strand_p_value=0.51417	frequency=1	ks_quality_p_value=0.837438	major_base=T	major_cov=22/15	major_frequency=9.487e-01	minor_base=C	minor_cov=2/0	new_cov=22/15	polymorphism_frequency=9.487e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=2/0	total_cov=24/15
RA	1038	.	NC_000913	5183	0	A	C	bias_e_value=2415730	bias_p_value=0.520446	consensus_score=116.8	fisher_strand_p_value=0.51417	frequency=1	ks_quality_p_value=0.387237	major_base=C	major_cov=22/15	major_frequency=9.487e-01	minor_base=A	minor_cov=2/0	new_cov=22/15	polymorphism_frequency=9.487e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=2/0	total_cov=24/15
RA	1039	.	NC_000913	5234	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=128.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/14	major_frequency=9.545e-01	minor_base=G	minor_cov=2/0	new_cov=28/14	polymorphism_frequency=9.545e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=2/0	total_cov=30/14
RA	1040	.	NC_000913	5442	0	T	C	bias_e_value=4640000	bias_p_value=0.999645	consensus_score=101.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.973468	major_base=C	major_cov=16/18	major_frequency=9.714e-01	minor_base=A	minor_cov=0/1	new_cov=16/18	polymorphism_frequency=9.714e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	1041	.	NC_000913	5603	0	T	G	bias_e_value=2166660	bias_p_value=0.466786	consensus_score=118.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.167501	major_base=G	major_cov=20/28	major_frequency=9.412e-01	minor_base=T	minor_cov=1/2	new_cov=20/28	polymorphism_frequency=9.412e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=21/30
RA	1042	.	NC_000913	5642	0	A	C	bias_e_value=1827130	bias_p_value=0.393637	consensus_score=128.6	fisher_strand_p_value=0.549306	frequency=1	ks_quality_p_value=0.235244	major_base=C	major_cov=16/28	major_frequency=9.362e-01	minor_base=A	minor_cov=2/1	new_cov=16/28	polymorphism_frequency=9.362e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=2/1	total_cov=19/29
RA	1043	.	NC_000913	5732	0	T	G	bias_e_value=4501040	bias_p_value=0.969707	consensus_score=178.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.764179	major_base=G	major_cov=24/29	major_frequency=9.636e-01	minor_base=T	minor_cov=1/1	new_cov=24/29	polymorphism_frequency=9.636e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=25/30
RA	1044	.	NC_000913	5806	0	G	A	consensus_score=136.5	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	1045	.	NC_000913	5851	0	G	T	consensus_score=104.9	frequency=1	major_base=T	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	1046	.	NC_000913	6106	0	G	C	bias_e_value=2891230	bias_p_value=0.622889	consensus_score=174.6	fisher_strand_p_value=0.448276	frequency=1	ks_quality_p_value=0.601233	major_base=C	major_cov=32/25	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=32/25	polymorphism_frequency=9.828e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=32/26
RA	1047	.	NC_000913	6239	0	G	T	bias_e_value=935402	bias_p_value=0.201523	consensus_score=119.0	fisher_strand_p_value=0.0505809	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/13	major_frequency=8.936e-01	minor_base=C	minor_cov=1/4	new_cov=29/13	polymorphism_frequency=8.936e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=30/19
RA	1048	.	NC_000913	6349	0	C	T	bias_e_value=3696580	bias_p_value=0.796394	consensus_score=99.4	fisher_strand_p_value=0.441176	frequency=1	ks_quality_p_value=0.984085	major_base=T	major_cov=19/14	major_frequency=9.706e-01	minor_base=A	minor_cov=0/1	new_cov=19/14	polymorphism_frequency=9.706e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	1049	.	NC_000913	6502	0	T	A	consensus_score=129.5	frequency=1	major_base=A	major_cov=17/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/23
RA	1050	.	NC_000913	6574	0	A	G	bias_e_value=4632360	bias_p_value=0.997998	consensus_score=128.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.937399	major_base=G	major_cov=22/22	major_frequency=9.778e-01	minor_base=T	minor_cov=0/1	new_cov=22/22	polymorphism_frequency=9.778e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=23/23
RA	1051	.	NC_000913	6595	0	T	C	bias_e_value=3341920	bias_p_value=0.719984	consensus_score=129.9	fisher_strand_p_value=0.488889	frequency=1	ks_quality_p_value=0.720887	major_base=C	major_cov=21/23	major_frequency=9.778e-01	minor_base=T	minor_cov=1/0	new_cov=21/23	polymorphism_frequency=9.778e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=22/24
RA	1052	.	NC_000913	6748	0	G	A	bias_e_value=4183100	bias_p_value=0.901209	consensus_score=88.2	fisher_strand_p_value=0.602597	frequency=1	ks_quality_p_value=0.978799	major_base=A	major_cov=15/17	major_frequency=9.143e-01	minor_base=G	minor_cov=2/1	new_cov=15/17	polymorphism_frequency=9.143e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=2/1	total_cov=18/18
RA	1053	.	NC_000913	6850	0	A	G	bias_e_value=1778480	bias_p_value=0.383156	consensus_score=83.2	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.266032	major_base=G	major_cov=16/13	major_frequency=9.667e-01	minor_base=A	minor_cov=0/1	new_cov=16/13	polymorphism_frequency=9.667e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=16/14
RA	1054	.	NC_000913	6898	0	A	G	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=82.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99754	major_base=G	major_cov=19/9	major_frequency=9.655e-01	minor_base=A	minor_cov=1/0	new_cov=19/9	polymorphism_frequency=9.655e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=20/10
RA	1055	.	NC_000913	6933	0	G	A	bias_e_value=1257420	bias_p_value=0.2709	consensus_score=102.7	fisher_strand_p_value=0.0756303	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/8	major_frequency=8.889e-01	minor_base=C	minor_cov=1/3	new_cov=24/8	polymorphism_frequency=8.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	1056	.	NC_000913	7132	0	A	C	consensus_score=93.9	frequency=1	major_base=C	major_cov=22/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/9
RA	1057	.	NC_000913	7297	0	T	C	bias_e_value=4621470	bias_p_value=0.995652	consensus_score=115.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.908212	major_base=C	major_cov=20/18	major_frequency=9.268e-01	minor_base=T	minor_cov=2/1	new_cov=20/18	polymorphism_frequency=9.268e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=22/19
RA	1058	.	NC_000913	7342	0	G	C	bias_e_value=4553040	bias_p_value=0.980909	consensus_score=110.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.811069	major_base=C	major_cov=18/18	major_frequency=9.231e-01	minor_base=G	minor_cov=2/1	new_cov=18/18	polymorphism_frequency=9.231e-01	polymorphism_score=1.5	prediction=consensus	ref_cov=2/1	total_cov=20/19
RA	1059	.	NC_000913	7384	0	T	C	bias_e_value=2380570	bias_p_value=0.512872	consensus_score=120.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.194447	major_base=C	major_cov=20/20	major_frequency=9.302e-01	minor_base=T	minor_cov=2/1	new_cov=20/20	polymorphism_frequency=9.302e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=2/1	total_cov=22/21
RA	1060	.	NC_000913	7395	0	T	C	bias_e_value=3937620	bias_p_value=0.848322	consensus_score=123.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.502532	major_base=C	major_cov=20/20	major_frequency=9.524e-01	minor_base=T	minor_cov=1/1	new_cov=20/20	polymorphism_frequency=9.524e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/1	total_cov=22/21
RA	1061	.	NC_000913	7414	0	G	A	bias_e_value=3200300	bias_p_value=0.689475	consensus_score=103.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.324287	major_base=A	major_cov=20/17	major_frequency=9.250e-01	minor_base=G	minor_cov=2/1	new_cov=20/17	polymorphism_frequency=9.250e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=2/1	total_cov=22/18
RA	1062	.	NC_000913	7456	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=68.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/13	major_frequency=9.355e-01	minor_base=G	minor_cov=1/1	new_cov=16/13	polymorphism_frequency=9.355e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=18/14
RA	1063	.	NC_000913	7459	0	G	C	bias_e_value=4480080	bias_p_value=0.96519	consensus_score=77.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.748022	major_base=C	major_cov=17/14	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=17/14	polymorphism_frequency=9.688e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=18/14
RA	1064	.	NC_000913	7474	0	T	C	bias_e_value=4617620	bias_p_value=0.994823	consensus_score=85.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.899986	major_base=C	major_cov=17/13	major_frequency=9.677e-01	minor_base=T	minor_cov=1/0	new_cov=17/13	polymorphism_frequency=9.677e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=18/13
RA	1065	.	NC_000913	7479	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=89.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997852	major_base=T	major_cov=17/13	major_frequency=9.677e-01	minor_base=C	minor_cov=1/0	new_cov=17/13	polymorphism_frequency=9.677e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=1/0	total_cov=18/13
RA	1066	.	NC_000913	7498	0	A	G	bias_e_value=4616650	bias_p_value=0.994614	consensus_score=94.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.89802	major_base=G	major_cov=19/15	major_frequency=9.714e-01	minor_base=A	minor_cov=1/0	new_cov=19/15	polymorphism_frequency=9.714e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=20/15
RA	1067	.	NC_000913	7598	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=94.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=15/16	major_frequency=9.688e-01	minor_base=A	minor_cov=0/1	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=15/17
RA	1068	.	NC_000913	7600	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=92.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/16	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/17
RA	1069	.	NC_000913	7618	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=92.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/15	major_frequency=9.677e-01	minor_base=T	minor_cov=0/1	new_cov=15/15	polymorphism_frequency=9.677e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/1	total_cov=15/16
RA	1070	.	NC_000913	7624	0	C	G	bias_e_value=4641460	bias_p_value=0.999958	consensus_score=90.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990847	major_base=G	major_cov=15/14	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=15/14	polymorphism_frequency=9.667e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=15/15
RA	1071	.	NC_000913	7627	0	A	G	bias_e_value=4640670	bias_p_value=0.999789	consensus_score=91.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979523	major_base=G	major_cov=15/14	major_frequency=9.667e-01	minor_base=A	minor_cov=0/1	new_cov=15/14	polymorphism_frequency=9.667e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=15/15
RA	1072	.	NC_000913	7681	0	A	G	bias_e_value=3928910	bias_p_value=0.846447	consensus_score=89.6	fisher_strand_p_value=0.534274	frequency=1	ks_quality_p_value=0.935507	major_base=G	major_cov=11/19	major_frequency=9.375e-01	minor_base=A	minor_cov=0/2	new_cov=11/19	polymorphism_frequency=9.375e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/2	total_cov=11/21
RA	1073	.	NC_000913	7711	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=78.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/18	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=11/18	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=11/20
RA	1074	.	NC_000913	7939	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=101.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/16	major_frequency=9.697e-01	minor_base=T	minor_cov=1/0	new_cov=16/16	polymorphism_frequency=9.697e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	1075	.	NC_000913	8963	0	G	T	bias_e_value=4095680	bias_p_value=0.882375	consensus_score=145.9	fisher_strand_p_value=0.594279	frequency=1	ks_quality_p_value=0.935618	major_base=T	major_cov=21/25	major_frequency=9.388e-01	minor_base=G	minor_cov=2/1	new_cov=21/25	polymorphism_frequency=9.388e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=2/1	total_cov=23/26
RA	1076	.	NC_000913	8975	0	G	T	bias_e_value=2301080	bias_p_value=0.495746	consensus_score=150.9	fisher_strand_p_value=0.225306	frequency=1	ks_quality_p_value=0.817367	major_base=T	major_cov=22/26	major_frequency=9.600e-01	minor_base=G	minor_cov=2/0	new_cov=22/26	polymorphism_frequency=9.600e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=2/0	total_cov=24/26
RA	1077	.	NC_000913	8976	0	G	A	bias_e_value=2401970	bias_p_value=0.517482	consensus_score=139.4	fisher_strand_p_value=0.234694	frequency=1	ks_quality_p_value=0.84056	major_base=A	major_cov=22/25	major_frequency=9.592e-01	minor_base=G	minor_cov=2/0	new_cov=22/25	polymorphism_frequency=9.592e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=2/0	total_cov=24/26
RA	1078	.	NC_000913	8996	0	G	T	bias_e_value=2163400	bias_p_value=0.466083	consensus_score=140.3	fisher_strand_p_value=0.172727	frequency=1	ks_quality_p_value=0.967466	major_base=T	major_cov=17/26	major_frequency=9.556e-01	minor_base=G	minor_cov=2/0	new_cov=17/26	polymorphism_frequency=9.556e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/0	total_cov=19/26
RA	1079	.	NC_000913	9488	0	G	A	bias_e_value=2251230	bias_p_value=0.485007	consensus_score=147.2	fisher_strand_p_value=0.178571	frequency=1	ks_quality_p_value=0.9961	major_base=A	major_cov=28/19	major_frequency=9.592e-01	minor_base=G	minor_cov=0/2	new_cov=28/19	polymorphism_frequency=9.592e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/2	total_cov=28/21
RA	1080	.	NC_000913	9623	0	C	A	consensus_score=184.4	frequency=1	major_base=A	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	1081	.	NC_000913	9665	0	G	T	bias_e_value=4641610	bias_p_value=0.99999	consensus_score=198.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995546	major_base=T	major_cov=26/37	major_frequency=9.844e-01	minor_base=G	minor_cov=0/1	new_cov=26/37	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/38
RA	1082	.	NC_000913	9668	0	C	T	bias_e_value=2048700	bias_p_value=0.441373	consensus_score=180.8	fisher_strand_p_value=0.15361	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/38	major_frequency=9.683e-01	minor_base=G	minor_cov=2/0	new_cov=23/38	polymorphism_frequency=9.683e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/38
RA	1083	.	NC_000913	9754	0	A	C	consensus_score=243.7	frequency=1	major_base=C	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	1084	.	NC_000913	9839	0	G	A	consensus_score=160.9	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	1085	.	NC_000913	9851	0	A	T	bias_e_value=3865890	bias_p_value=0.832869	consensus_score=157.5	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/27	major_frequency=9.808e-01	minor_base=A	minor_cov=1/0	new_cov=24/27	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=25/27
RA	1086	.	NC_000913	10006	0	G	A	bias_e_value=3491080	bias_p_value=0.75212	consensus_score=118.7	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/14	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=24/14	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/15
RA	1087	.	NC_000913	10015	0	G	A	consensus_score=127.6	frequency=1	major_base=A	major_cov=25/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/15
RA	1088	.	NC_000913	10024	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=122.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/16	major_frequency=9.756e-01	minor_base=C	minor_cov=1/0	new_cov=24/16	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=25/16
RA	1089	.	NC_000913	10099	0	G	A	consensus_score=166.0	frequency=1	major_base=A	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	1090	.	NC_000913	10260	0	G	A	bias_e_value=3575900	bias_p_value=0.770393	consensus_score=147.6	fisher_strand_p_value=0.404255	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/28	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=18/28	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/28
RA	1091	.	NC_000913	10336	0	A	G	consensus_score=152.1	frequency=1	major_base=G	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	1092	.	NC_000913	10548	0	T	A	bias_e_value=3991040	bias_p_value=0.859831	consensus_score=123.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.519678	major_base=A	major_cov=24/16	major_frequency=9.091e-01	minor_base=T	minor_cov=2/2	new_cov=24/16	polymorphism_frequency=9.091e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=2/2	total_cov=26/18
RA	1093	.	NC_000913	10637	0	C	A	bias_e_value=4567220	bias_p_value=0.983965	consensus_score=149.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.826349	major_base=A	major_cov=26/23	major_frequency=9.423e-01	minor_base=C	minor_cov=2/1	new_cov=26/23	polymorphism_frequency=9.423e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=2/1	total_cov=28/24
RA	1094	.	NC_000913	10642	0	A	G	bias_e_value=4605850	bias_p_value=0.992288	consensus_score=150.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.878401	major_base=G	major_cov=26/23	major_frequency=9.608e-01	minor_base=A	minor_cov=1/1	new_cov=26/23	polymorphism_frequency=9.608e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=27/24
RA	1095	.	NC_000913	10703	0	C	T	bias_e_value=3911440	bias_p_value=0.842682	consensus_score=137.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.494431	major_base=T	major_cov=20/25	major_frequency=9.783e-01	minor_base=C	minor_cov=0/1	new_cov=20/25	polymorphism_frequency=9.783e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=20/26
RA	1096	.	NC_000913	10718	0	G	A	bias_e_value=3296760	bias_p_value=0.710255	consensus_score=129.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.343221	major_base=A	major_cov=21/25	major_frequency=9.787e-01	minor_base=G	minor_cov=0/1	new_cov=21/25	polymorphism_frequency=9.787e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=21/27
RA	1097	.	NC_000913	10747	0	G	A	bias_e_value=4633140	bias_p_value=0.998165	consensus_score=138.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.940037	major_base=A	major_cov=20/25	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=20/25	polymorphism_frequency=9.783e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=20/26
RA	1098	.	NC_000913	10751	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=128.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/24	major_frequency=9.773e-01	minor_base=G	minor_cov=0/1	new_cov=19/24	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=19/26
RA	1099	.	NC_000913	10754	0	A	G	bias_e_value=4624950	bias_p_value=0.996401	consensus_score=123.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.916367	major_base=G	major_cov=18/25	major_frequency=9.556e-01	minor_base=A	minor_cov=1/1	new_cov=18/25	polymorphism_frequency=9.556e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=19/26
RA	1100	.	NC_000913	10757	0	T	C	bias_e_value=2917840	bias_p_value=0.628622	consensus_score=131.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.273918	major_base=C	major_cov=18/25	major_frequency=9.773e-01	minor_base=T	minor_cov=0/1	new_cov=18/25	polymorphism_frequency=9.773e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=19/26
RA	1101	.	NC_000913	10772	0	C	A	bias_e_value=4237250	bias_p_value=0.912875	consensus_score=146.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.612751	major_base=A	major_cov=24/24	major_frequency=9.796e-01	minor_base=C	minor_cov=0/1	new_cov=24/24	polymorphism_frequency=9.796e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=24/25
RA	1102	.	NC_000913	10802	0	T	C	consensus_score=131.5	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	1103	.	NC_000913	10840	0	G	A	consensus_score=136.6	frequency=1	major_base=A	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	1104	.	NC_000913	10865	0	A	G	consensus_score=152.7	frequency=1	major_base=G	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	1105	.	NC_000913	10973	0	T	A	bias_e_value=4601340	bias_p_value=0.991315	consensus_score=158.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.871134	major_base=A	major_cov=26/23	major_frequency=9.800e-01	minor_base=T	minor_cov=1/0	new_cov=26/23	polymorphism_frequency=9.800e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=27/23
RA	1106	.	NC_000913	10985	0	A	G	bias_e_value=4546400	bias_p_value=0.97948	consensus_score=151.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.804377	major_base=G	major_cov=26/22	major_frequency=9.796e-01	minor_base=A	minor_cov=1/0	new_cov=26/22	polymorphism_frequency=9.796e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=27/22
RA	1107	.	NC_000913	11021	0	T	C	bias_e_value=4460890	bias_p_value=0.961057	consensus_score=139.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.734228	major_base=C	major_cov=23/24	major_frequency=9.400e-01	minor_base=T	minor_cov=2/1	new_cov=23/24	polymorphism_frequency=9.400e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=2/1	total_cov=25/25
RA	1108	.	NC_000913	11063	0	C	T	bias_e_value=1463590	bias_p_value=0.315317	consensus_score=141.1	fisher_strand_p_value=0.602041	frequency=1	ks_quality_p_value=0.155474	major_base=T	major_cov=22/25	major_frequency=9.400e-01	minor_base=C	minor_cov=2/1	new_cov=22/25	polymorphism_frequency=9.400e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/1	total_cov=24/27
RA	1109	.	NC_000913	11156	0	G	A	bias_e_value=4555070	bias_p_value=0.981347	consensus_score=137.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.813175	major_base=A	major_cov=23/24	major_frequency=9.400e-01	minor_base=G	minor_cov=2/1	new_cov=23/24	polymorphism_frequency=9.400e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/1	total_cov=25/25
RA	1110	.	NC_000913	11225	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=102.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998219	major_base=T	major_cov=13/20	major_frequency=9.706e-01	minor_base=C	minor_cov=0/1	new_cov=13/20	polymorphism_frequency=9.706e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/1	total_cov=13/21
RA	1111	.	NC_000913	11366	0	C	T	bias_e_value=4524070	bias_p_value=0.974668	consensus_score=87.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.783526	major_base=T	major_cov=14/17	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=14/18
RA	1112	.	NC_000913	11439	0	C	G	bias_e_value=3863240	bias_p_value=0.832298	consensus_score=73.1	fisher_strand_p_value=0.483077	frequency=1	ks_quality_p_value=0.99361	major_base=G	major_cov=12/12	major_frequency=9.231e-01	minor_base=C	minor_cov=0/2	new_cov=12/12	polymorphism_frequency=9.231e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/2	total_cov=12/15
RA	1113	.	NC_000913	11481	0	G	A	bias_e_value=4620430	bias_p_value=0.995428	consensus_score=63.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.905911	major_base=A	major_cov=13/9	major_frequency=9.565e-01	minor_base=C	minor_cov=1/0	new_cov=13/9	polymorphism_frequency=9.565e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	1114	.	NC_000913	11541	0	G	A	bias_e_value=4361950	bias_p_value=0.939741	consensus_score=89.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.673571	major_base=A	major_cov=19/12	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=19/12	polymorphism_frequency=9.688e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=20/12
RA	1115	.	NC_000913	11695	0	G	A	bias_e_value=3654160	bias_p_value=0.787255	consensus_score=118.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.423364	major_base=A	major_cov=21/19	major_frequency=9.524e-01	minor_base=G	minor_cov=1/1	new_cov=21/19	polymorphism_frequency=9.524e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=23/20
RA	1116	.	NC_000913	11814	0	G	A	bias_e_value=4603950	bias_p_value=0.991877	consensus_score=139.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.875281	major_base=A	major_cov=17/29	major_frequency=9.787e-01	minor_base=G	minor_cov=0/1	new_cov=17/29	polymorphism_frequency=9.787e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=17/30
RA	1117	.	NC_000913	11854	0	A	G	consensus_score=130.8	frequency=1	major_base=G	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	1118	.	NC_000913	11861	0	C	T	bias_e_value=3600920	bias_p_value=0.775784	consensus_score=111.4	fisher_strand_p_value=0.410256	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/23	major_frequency=9.744e-01	minor_base=A	minor_cov=1/0	new_cov=15/23	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	1119	.	NC_000913	11925	0	A	C	consensus_score=109.2	frequency=1	major_base=C	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	1120	.	NC_000913	12026	0	T	G	consensus_score=120.4	frequency=1	major_base=G	major_cov=24/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/13
RA	1121	.	NC_000913	12237	0	C	T	consensus_score=137.1	frequency=1	major_base=T	major_cov=24/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/18
RA	1122	.	NC_000913	12309	0	A	G	consensus_score=149.3	frequency=1	major_base=G	major_cov=25/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/19
RA	1123	.	NC_000913	12357	0	T	C	bias_e_value=4603000	bias_p_value=0.991673	consensus_score=115.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.873757	major_base=C	major_cov=22/16	major_frequency=9.744e-01	minor_base=A	minor_cov=1/0	new_cov=22/16	polymorphism_frequency=9.744e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=23/16
RA	1124	.	NC_000913	12384	0	T	C	bias_e_value=4641130	bias_p_value=0.999887	consensus_score=106.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.984988	major_base=C	major_cov=23/11	major_frequency=9.714e-01	minor_base=A	minor_cov=1/0	new_cov=23/11	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/11
RA	1125	.	NC_000913	12507	0	T	C	bias_e_value=4633140	bias_p_value=0.998165	consensus_score=142.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.940037	major_base=C	major_cov=23/22	major_frequency=9.783e-01	minor_base=A	minor_cov=1/0	new_cov=23/22	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	1126	.	NC_000913	12714	0	C	T	bias_e_value=3410050	bias_p_value=0.734662	consensus_score=98.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.366784	major_base=T	major_cov=23/16	major_frequency=9.070e-01	minor_base=C	minor_cov=2/2	new_cov=23/16	polymorphism_frequency=9.070e-01	polymorphism_score=1.6	prediction=consensus	ref_cov=2/2	total_cov=25/19
RA	1127	.	NC_000913	12846	0	G	T	bias_e_value=4641110	bias_p_value=0.999883	consensus_score=159.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98471	major_base=T	major_cov=34/21	major_frequency=9.322e-01	minor_base=G	minor_cov=3/1	new_cov=34/21	polymorphism_frequency=9.322e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=3/1	total_cov=40/22
RA	1128	.	NC_000913	12879	0	T	C	bias_e_value=2752020	bias_p_value=0.592897	consensus_score=166.3	fisher_strand_p_value=0.255195	frequency=1	ks_quality_p_value=0.969292	major_base=C	major_cov=37/17	major_frequency=9.474e-01	minor_base=T	minor_cov=1/2	new_cov=37/17	polymorphism_frequency=9.474e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/2	total_cov=39/19
RA	1129	.	NC_000913	13014	0	A	G	bias_e_value=3595090	bias_p_value=0.774527	consensus_score=185.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.408849	major_base=G	major_cov=36/27	major_frequency=9.130e-01	minor_base=A	minor_cov=3/3	new_cov=36/27	polymorphism_frequency=9.130e-01	polymorphism_score=6.4	prediction=consensus	ref_cov=3/3	total_cov=39/31
RA	1130	.	NC_000913	13029	0	C	T	bias_e_value=4607500	bias_p_value=0.992642	consensus_score=178.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.881172	major_base=T	major_cov=35/27	major_frequency=9.118e-01	minor_base=C	minor_cov=3/3	new_cov=35/27	polymorphism_frequency=9.118e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=3/3	total_cov=38/31
RA	1131	.	NC_000913	13320	0	A	G	bias_e_value=4083300	bias_p_value=0.879709	consensus_score=150.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.551506	major_base=G	major_cov=24/25	major_frequency=9.800e-01	minor_base=A	minor_cov=0/1	new_cov=24/25	polymorphism_frequency=9.800e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=24/26
RA	1132	.	NC_000913	13539	0	A	G	consensus_score=182.8	frequency=1	major_base=G	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	1133	.	NC_000913	13866	0	G	A	consensus_score=144.2	frequency=1	major_base=A	major_cov=17/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/31
RA	1134	.	NC_000913	13932	0	A	G	consensus_score=169.3	frequency=1	major_base=G	major_cov=20/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/31
RA	1135	.	NC_000913	14223	0	G	A	bias_e_value=4409900	bias_p_value=0.950072	consensus_score=136.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.701123	major_base=A	major_cov=21/25	major_frequency=9.583e-01	minor_base=G	minor_cov=1/1	new_cov=21/25	polymorphism_frequency=9.583e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=22/26
RA	1136	.	NC_000913	14232	0	G	A	bias_e_value=4220200	bias_p_value=0.909203	consensus_score=144.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.605347	major_base=A	major_cov=22/25	major_frequency=9.592e-01	minor_base=G	minor_cov=1/1	new_cov=22/25	polymorphism_frequency=9.592e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=23/26
RA	1137	.	NC_000913	14401	0	C	T	bias_e_value=2292390	bias_p_value=0.493873	consensus_score=135.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.183053	major_base=T	major_cov=24/20	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=24/20	polymorphism_frequency=9.778e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=25/20
RA	1138	.	NC_000913	14647	0	T	C	bias_e_value=4625540	bias_p_value=0.99653	consensus_score=173.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917856	major_base=C	major_cov=31/25	major_frequency=9.333e-01	minor_base=T	minor_cov=2/2	new_cov=31/25	polymorphism_frequency=9.333e-01	polymorphism_score=2.1	prediction=consensus	ref_cov=2/2	total_cov=33/27
RA	1139	.	NC_000913	14686	0	C	T	bias_e_value=2281190	bias_p_value=0.49146	consensus_score=188.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.181635	major_base=T	major_cov=35/28	major_frequency=9.403e-01	minor_base=C	minor_cov=2/2	new_cov=35/28	polymorphism_frequency=9.403e-01	polymorphism_score=2.7	prediction=consensus	ref_cov=2/2	total_cov=37/31
RA	1140	.	NC_000913	14698	0	C	T	bias_e_value=3355790	bias_p_value=0.722974	consensus_score=183.0	fisher_strand_p_value=0.355311	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/29	major_frequency=9.385e-01	minor_base=C	minor_cov=1/3	new_cov=32/29	polymorphism_frequency=9.385e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=1/3	total_cov=33/34
RA	1141	.	NC_000913	14701	0	T	C	bias_e_value=4215720	bias_p_value=0.908236	consensus_score=201.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.603427	major_base=C	major_cov=32/32	major_frequency=9.552e-01	minor_base=T	minor_cov=1/2	new_cov=32/32	polymorphism_frequency=9.552e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=1/2	total_cov=33/34
RA	1142	.	NC_000913	14704	0	A	G	bias_e_value=4163810	bias_p_value=0.897054	consensus_score=188.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.582049	major_base=G	major_cov=32/32	major_frequency=9.552e-01	minor_base=A	minor_cov=1/2	new_cov=32/32	polymorphism_frequency=9.552e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/2	total_cov=33/34
RA	1143	.	NC_000913	14956	0	G	C	bias_e_value=4199510	bias_p_value=0.904745	consensus_score=205.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.596593	major_base=C	major_cov=26/35	major_frequency=9.385e-01	minor_base=G	minor_cov=2/2	new_cov=26/35	polymorphism_frequency=9.385e-01	polymorphism_score=6.2	prediction=consensus	ref_cov=2/2	total_cov=28/37
RA	1144	.	NC_000913	15073	0	A	T	bias_e_value=3525830	bias_p_value=0.759608	consensus_score=179.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.392537	major_base=T	major_cov=26/32	major_frequency=9.831e-01	minor_base=A	minor_cov=0/1	new_cov=26/32	polymorphism_frequency=9.831e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=26/33
RA	1145	.	NC_000913	15172	0	A	G	bias_e_value=4417500	bias_p_value=0.951709	consensus_score=173.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.705776	major_base=G	major_cov=28/29	major_frequency=9.828e-01	minor_base=A	minor_cov=0/1	new_cov=28/29	polymorphism_frequency=9.828e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=28/30
RA	1146	.	NC_000913	15174	0	G	A	bias_e_value=4382750	bias_p_value=0.944222	consensus_score=184.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.685162	major_base=A	major_cov=28/29	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=28/29	polymorphism_frequency=9.828e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=28/30
RA	1147	.	NC_000913	15226	0	C	T	bias_e_value=4468490	bias_p_value=0.962694	consensus_score=162.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.73959	major_base=T	major_cov=21/30	major_frequency=9.808e-01	minor_base=C	minor_cov=0/1	new_cov=21/30	polymorphism_frequency=9.808e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=21/31
RA	1148	.	NC_000913	15328	0	C	T	bias_e_value=4633490	bias_p_value=0.998242	consensus_score=99.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.94129	major_base=T	major_cov=10/24	major_frequency=9.714e-01	minor_base=C	minor_cov=0/1	new_cov=10/24	polymorphism_frequency=9.714e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=10/25
RA	1149	.	NC_000913	15338	0	A	T	bias_e_value=4641210	bias_p_value=0.999905	consensus_score=102.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986243	major_base=T	major_cov=10/23	major_frequency=9.429e-01	minor_base=G	minor_cov=0/2	new_cov=10/23	polymorphism_frequency=9.429e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=10/26
RA	1150	.	NC_000913	15369	0	T	A	consensus_score=100.3	frequency=1	major_base=A	major_cov=6/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/25
RA	1151	.	NC_000913	16749	0	T	A	bias_e_value=2522460	bias_p_value=0.54344	consensus_score=70.2	fisher_strand_p_value=0.213675	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/2	major_frequency=9.259e-01	minor_base=T	minor_cov=1/1	new_cov=23/2	polymorphism_frequency=9.259e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=24/3
RA	1152	.	NC_000913	16966	0	A	G	bias_e_value=3738120	bias_p_value=0.805343	consensus_score=76.1	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.958555	major_base=G	major_cov=15/12	major_frequency=9.643e-01	minor_base=A	minor_cov=0/1	new_cov=15/12	polymorphism_frequency=9.643e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=15/13
RA	1153	.	NC_000913	16981	0	G	A	bias_e_value=4639560	bias_p_value=0.99955	consensus_score=54.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.970152	major_base=A	major_cov=10/12	major_frequency=9.167e-01	minor_base=G	minor_cov=1/1	new_cov=10/12	polymorphism_frequency=9.167e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/1	total_cov=12/13
RA	1154	.	NC_000913	17039	0	C	T	consensus_score=40.2	frequency=1	major_base=T	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	1155	.	NC_000913	17085	0	T	C	consensus_score=48.6	frequency=1	major_base=C	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	1156	.	NC_000913	17175	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=42.5	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/5	major_frequency=9.333e-01	minor_base=A	minor_cov=0/1	new_cov=9/5	polymorphism_frequency=9.333e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	1157	.	NC_000913	17219	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=67.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/8	major_frequency=9.167e-01	minor_base=A	minor_cov=1/1	new_cov=14/8	polymorphism_frequency=9.167e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=16/9
RA	1158	.	NC_000913	17228	0	G	A	consensus_score=73.8	frequency=1	major_base=A	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1159	.	NC_000913	17229	0	C	T	consensus_score=75.1	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1160	.	NC_000913	17231	0	T	A	consensus_score=75.2	frequency=1	major_base=A	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1161	.	NC_000913	17245	0	C	G	consensus_score=77.9	frequency=1	major_base=G	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1162	.	NC_000913	17281	0	G	A	consensus_score=78.9	frequency=1	major_base=A	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	1163	.	NC_000913	17309	0	A	G	consensus_score=111.7	frequency=1	major_base=G	major_cov=20/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/14
RA	1164	.	NC_000913	17348	1	.	A	bias_e_value=4641620	bias_p_value=0.999992	consensus_score=97.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996098	major_base=A	major_cov=19/12	major_frequency=9.394e-01	minor_base=T	minor_cov=1/1	new_cov=19/12	polymorphism_frequency=9.394e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=20/13
RA	1165	.	NC_000913	17350	0	G	T	bias_e_value=3519000	bias_p_value=0.758136	consensus_score=96.5	fisher_strand_p_value=0.393939	frequency=1	ks_quality_p_value=0.992453	major_base=T	major_cov=20/12	major_frequency=9.697e-01	minor_base=C	minor_cov=0/1	new_cov=20/12	polymorphism_frequency=9.697e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=20/13
RA	1166	.	NC_000913	17383	0	A	G	consensus_score=105.7	frequency=1	major_base=G	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	1167	.	NC_000913	17385	0	C	A	consensus_score=94.8	frequency=1	major_base=A	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	1168	.	NC_000913	17399	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=93.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=17/12	major_frequency=9.667e-01	minor_base=T	minor_cov=1/0	new_cov=17/12	polymorphism_frequency=9.667e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	1169	.	NC_000913	17436	0	C	T	consensus_score=91.0	frequency=1	major_base=T	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	1170	.	NC_000913	17578	0	C	T	consensus_score=90.3	frequency=1	major_base=T	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	1171	.	NC_000913	17809	0	G	T	bias_e_value=4590990	bias_p_value=0.989086	consensus_score=129.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.85594	major_base=T	major_cov=22/20	major_frequency=9.333e-01	minor_base=G	minor_cov=2/1	new_cov=22/20	polymorphism_frequency=9.333e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=2/1	total_cov=24/21
RA	1172	.	NC_000913	17830	0	T	C	bias_e_value=4282120	bias_p_value=0.922542	consensus_score=148.7	fisher_strand_p_value=0.633177	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=28/21	major_frequency=9.245e-01	minor_base=T	minor_cov=3/1	new_cov=28/21	polymorphism_frequency=9.245e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=3/1	total_cov=31/22
RA	1173	.	NC_000913	17893	0	T	C	bias_e_value=4604020	bias_p_value=0.991892	consensus_score=154.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.875394	major_base=C	major_cov=31/19	major_frequency=9.434e-01	minor_base=T	minor_cov=2/1	new_cov=31/19	polymorphism_frequency=9.434e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/1	total_cov=34/20
RA	1174	.	NC_000913	17908	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=138.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=31/17	major_frequency=9.600e-01	minor_base=C	minor_cov=1/1	new_cov=31/17	polymorphism_frequency=9.600e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=32/19
RA	1175	.	NC_000913	18093	0	C	T	bias_e_value=2982800	bias_p_value=0.642615	consensus_score=130.7	fisher_strand_p_value=0.487805	frequency=1	ks_quality_p_value=0.584029	major_base=T	major_cov=21/19	major_frequency=9.756e-01	minor_base=C	minor_cov=0/1	new_cov=21/19	polymorphism_frequency=9.756e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=22/21
RA	1176	.	NC_000913	18118	0	T	G	bias_e_value=3778890	bias_p_value=0.814126	consensus_score=128.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.456059	major_base=G	major_cov=21/20	major_frequency=9.762e-01	minor_base=T	minor_cov=0/1	new_cov=21/20	polymorphism_frequency=9.762e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=21/21
RA	1177	.	NC_000913	18127	0	G	A	bias_e_value=3642090	bias_p_value=0.784654	consensus_score=111.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.42035	major_base=A	major_cov=20/19	major_frequency=9.750e-01	minor_base=G	minor_cov=0/1	new_cov=20/19	polymorphism_frequency=9.750e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=20/20
RA	1178	.	NC_000913	18169	0	T	C	bias_e_value=3038870	bias_p_value=0.654695	consensus_score=137.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.294644	major_base=C	major_cov=19/24	major_frequency=9.773e-01	minor_base=T	minor_cov=0/1	new_cov=19/24	polymorphism_frequency=9.773e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=19/25
RA	1179	.	NC_000913	18253	0	G	A	bias_e_value=3276410	bias_p_value=0.705872	consensus_score=113.2	fisher_strand_p_value=0.463415	frequency=1	ks_quality_p_value=0.731839	major_base=A	major_cov=22/18	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=22/18	polymorphism_frequency=9.756e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=23/19
RA	1180	.	NC_000913	18322	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=126.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/23	major_frequency=9.535e-01	minor_base=G	minor_cov=1/1	new_cov=18/23	polymorphism_frequency=9.535e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	1181	.	NC_000913	18477	0	T	C	bias_e_value=1042810	bias_p_value=0.224665	consensus_score=67.2	fisher_strand_p_value=0.0878754	frequency=1	ks_quality_p_value=0.666112	major_base=C	major_cov=4/24	major_frequency=9.032e-01	minor_base=T	minor_cov=2/1	new_cov=4/24	polymorphism_frequency=9.032e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=2/1	total_cov=6/27
RA	1182	.	NC_000913	19014	0	C	T	bias_e_value=2464080	bias_p_value=0.530863	consensus_score=99.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.205625	major_base=T	major_cov=20/14	major_frequency=9.444e-01	minor_base=C	minor_cov=1/1	new_cov=20/14	polymorphism_frequency=9.444e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=21/15
RA	1183	.	NC_000913	19398	0	T	G	bias_e_value=2700140	bias_p_value=0.581719	consensus_score=149.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.239447	major_base=G	major_cov=21/27	major_frequency=9.796e-01	minor_base=T	minor_cov=0/1	new_cov=21/27	polymorphism_frequency=9.796e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=21/28
RA	1184	.	NC_000913	19613	0	T	C	bias_e_value=1699070	bias_p_value=0.366048	consensus_score=81.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.116077	major_base=C	major_cov=11/18	major_frequency=9.355e-01	minor_base=T	minor_cov=1/1	new_cov=11/18	polymorphism_frequency=9.355e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/1	total_cov=12/19
RA	1185	.	NC_000913	19627	0	G	C	bias_e_value=1229210	bias_p_value=0.264821	consensus_score=65.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0732898	major_base=C	major_cov=11/14	major_frequency=9.259e-01	minor_base=G	minor_cov=1/1	new_cov=11/14	polymorphism_frequency=9.259e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/1	total_cov=12/15
RA	1186	.	NC_000913	19634	1	.	C	bias_e_value=3762550	bias_p_value=0.810606	consensus_score=77.3	fisher_strand_p_value=0.569231	frequency=1	ks_quality_p_value=0.793357	major_base=C	major_cov=10/14	major_frequency=8.889e-01	minor_base=.	minor_cov=2/1	new_cov=10/14	polymorphism_frequency=8.889e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=2/1	total_cov=12/15
RA	1187	.	NC_000913	19670	0	T	A	bias_e_value=4235250	bias_p_value=0.912444	consensus_score=59.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.611875	major_base=A	major_cov=9/10	major_frequency=9.048e-01	minor_base=T	minor_cov=1/1	new_cov=9/10	polymorphism_frequency=9.048e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=1/1	total_cov=10/12
RA	1188	.	NC_000913	19715	0	G	A	consensus_score=29.8	frequency=1	major_base=A	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	1189	.	NC_000913	20590	0	T	C	bias_e_value=3263540	bias_p_value=0.7031	consensus_score=21.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.33659	major_base=C	major_cov=6/3	major_frequency=9.000e-01	minor_base=T	minor_cov=1/0	new_cov=6/3	polymorphism_frequency=9.000e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=7/3
RA	1190	.	NC_000913	20600	0	G	A	bias_e_value=3136870	bias_p_value=0.675808	consensus_score=25.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.312348	major_base=A	major_cov=6/4	major_frequency=9.091e-01	minor_base=G	minor_cov=1/0	new_cov=6/4	polymorphism_frequency=9.091e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=8/4
RA	1191	.	NC_000913	20605	0	A	.	bias_e_value=4633460	bias_p_value=0.998236	consensus_score=38.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.941194	major_base=.	major_cov=7/4	major_frequency=9.167e-01	minor_base=A	minor_cov=1/0	new_cov=7/4	polymorphism_frequency=9.167e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/0	total_cov=8/4
RA	1192	.	NC_000913	21617	0	A	C	bias_e_value=3474010	bias_p_value=0.748442	consensus_score=173.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.380786	major_base=C	major_cov=30/26	major_frequency=9.655e-01	minor_base=A	minor_cov=1/1	new_cov=30/26	polymorphism_frequency=9.655e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=31/27
RA	1193	.	NC_000913	21619	0	A	G	bias_e_value=4233320	bias_p_value=0.912029	consensus_score=171.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.611029	major_base=G	major_cov=30/26	major_frequency=9.655e-01	minor_base=A	minor_cov=1/1	new_cov=30/26	polymorphism_frequency=9.655e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=31/27
RA	1194	.	NC_000913	21750	0	A	T	bias_e_value=3777090	bias_p_value=0.813739	consensus_score=148.6	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.949096	major_base=T	major_cov=26/23	major_frequency=9.800e-01	minor_base=C	minor_cov=0/1	new_cov=26/23	polymorphism_frequency=9.800e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	1195	.	NC_000913	21895	0	C	T	bias_e_value=4640860	bias_p_value=0.999829	consensus_score=130.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.981589	major_base=T	major_cov=19/22	major_frequency=9.762e-01	minor_base=G	minor_cov=0/1	new_cov=19/22	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1196	.	NC_000913	21910	0	C	T	consensus_score=135.2	frequency=1	major_base=T	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	1197	.	NC_000913	21922	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_score=132.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=20/22	major_frequency=9.767e-01	minor_base=T	minor_cov=0/1	new_cov=20/22	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	1198	.	NC_000913	21925	0	T	G	consensus_score=134.7	frequency=1	major_base=G	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	1199	.	NC_000913	21952	0	G	A	consensus_score=137.7	frequency=1	major_base=A	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	1200	.	NC_000913	22048	0	G	A	consensus_score=132.8	frequency=1	major_base=A	major_cov=22/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/24
RA	1201	.	NC_000913	22373	0	T	C	bias_e_value=2188040	bias_p_value=0.471392	consensus_score=81.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.17009	major_base=C	major_cov=14/17	major_frequency=8.857e-01	minor_base=T	minor_cov=2/2	new_cov=14/17	polymorphism_frequency=8.857e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=2/2	total_cov=16/19
RA	1202	.	NC_000913	22468	0	C	G	consensus_score=88.8	frequency=1	major_base=G	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	1203	.	NC_000913	22942	0	A	G	consensus_score=180.6	frequency=1	major_base=G	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	1204	.	NC_000913	22945	0	T	A	bias_e_value=3592250	bias_p_value=0.773916	consensus_score=166.8	fisher_strand_p_value=0.418182	frequency=1	ks_quality_p_value=0.976049	major_base=A	major_cov=32/22	major_frequency=9.818e-01	minor_base=G	minor_cov=0/1	new_cov=32/22	polymorphism_frequency=9.818e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	1205	.	NC_000913	23032	0	C	T	bias_e_value=3438200	bias_p_value=0.740727	consensus_score=188.2	fisher_strand_p_value=0.372881	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/21	major_frequency=9.831e-01	minor_base=G	minor_cov=0/1	new_cov=37/21	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	1206	.	NC_000913	23038	0	A	G	consensus_score=175.2	frequency=1	major_base=G	major_cov=36/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/21
RA	1207	.	NC_000913	23104	0	A	G	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=218.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998192	major_base=G	major_cov=40/26	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=40/26	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=41/26
RA	1208	.	NC_000913	23116	0	C	T	consensus_score=220.5	frequency=1	major_base=T	major_cov=41/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/26
RA	1209	.	NC_000913	23137	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_score=193.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/23	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=37/23	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/23
RA	1210	.	NC_000913	23161	0	A	T	consensus_score=188.6	frequency=1	major_base=T	major_cov=38/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/20
RA	1211	.	NC_000913	23270	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=160.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/20	major_frequency=9.636e-01	minor_base=C	minor_cov=1/1	new_cov=33/20	polymorphism_frequency=9.636e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/21
RA	1212	.	NC_000913	23297	0	C	T	consensus_score=177.9	frequency=1	major_base=T	major_cov=40/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/23
RA	1213	.	NC_000913	23803	0	T	C	bias_e_value=1996160	bias_p_value=0.430054	consensus_score=267.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.14763	major_base=C	major_cov=38/50	major_frequency=9.565e-01	minor_base=T	minor_cov=2/2	new_cov=38/50	polymorphism_frequency=9.565e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=2/2	total_cov=40/52
RA	1214	.	NC_000913	23860	0	T	C	bias_e_value=792795	bias_p_value=0.1708	consensus_score=270.7	fisher_strand_p_value=0.37601	frequency=1	ks_quality_p_value=0.108074	major_base=C	major_cov=33/54	major_frequency=9.457e-01	minor_base=T	minor_cov=3/2	new_cov=33/54	polymorphism_frequency=9.457e-01	polymorphism_score=3.4	prediction=consensus	ref_cov=3/2	total_cov=36/56
RA	1215	.	NC_000913	23896	0	C	T	bias_e_value=1983890	bias_p_value=0.42741	consensus_score=249.2	fisher_strand_p_value=0.620939	frequency=1	ks_quality_p_value=0.235533	major_base=T	major_cov=28/50	major_frequency=9.512e-01	minor_base=C	minor_cov=2/2	new_cov=28/50	polymorphism_frequency=9.512e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/2	total_cov=31/52
RA	1216	.	NC_000913	23897	0	G	A	bias_e_value=1703640	bias_p_value=0.367033	consensus_score=247.9	fisher_strand_p_value=0.290272	frequency=1	ks_quality_p_value=0.401467	major_base=A	major_cov=27/51	major_frequency=9.630e-01	minor_base=G	minor_cov=2/1	new_cov=27/51	polymorphism_frequency=9.630e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/1	total_cov=31/52
RA	1217	.	NC_000913	23899	0	T	C	bias_e_value=1890190	bias_p_value=0.407223	consensus_score=240.2	fisher_strand_p_value=0.14432	frequency=1	ks_quality_p_value=0.941969	major_base=C	major_cov=28/51	major_frequency=9.518e-01	minor_base=T	minor_cov=3/1	new_cov=28/51	polymorphism_frequency=9.518e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=3/1	total_cov=31/52
RA	1218	.	NC_000913	23956	0	T	C	bias_e_value=1945050	bias_p_value=0.419042	consensus_score=279.4	fisher_strand_p_value=0.447059	frequency=1	ks_quality_p_value=0.31748	major_base=C	major_cov=37/47	major_frequency=9.882e-01	minor_base=T	minor_cov=1/0	new_cov=37/47	polymorphism_frequency=9.882e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=38/47
RA	1219	.	NC_000913	23962	0	C	T	bias_e_value=2420530	bias_p_value=0.521479	consensus_score=252.9	fisher_strand_p_value=0.432099	frequency=1	ks_quality_p_value=0.462271	major_base=T	major_cov=34/46	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=34/46	polymorphism_frequency=9.877e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/46
RA	1220	.	NC_000913	23977	0	C	T	bias_e_value=2123990	bias_p_value=0.457594	consensus_score=232.2	fisher_strand_p_value=0.459459	frequency=1	ks_quality_p_value=0.35346	major_base=T	major_cov=33/40	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=33/40	polymorphism_frequency=9.865e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=34/40
RA	1221	.	NC_000913	23980	0	A	T	bias_e_value=4632950	bias_p_value=0.998126	consensus_score=225.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.939402	major_base=T	major_cov=33/38	major_frequency=9.726e-01	minor_base=A	minor_cov=1/1	new_cov=33/38	polymorphism_frequency=9.726e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/1	total_cov=34/40
RA	1222	.	NC_000913	23981	0	T	C	bias_e_value=4252870	bias_p_value=0.91624	consensus_score=224.4	fisher_strand_p_value=0.619703	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=33/37	major_frequency=9.459e-01	minor_base=T	minor_cov=1/3	new_cov=33/37	polymorphism_frequency=9.459e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/3	total_cov=34/40
RA	1223	.	NC_000913	23983	0	G	C	bias_e_value=4632950	bias_p_value=0.998126	consensus_score=218.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.939402	major_base=C	major_cov=33/38	major_frequency=9.726e-01	minor_base=G	minor_cov=1/1	new_cov=33/38	polymorphism_frequency=9.726e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=34/40
RA	1224	.	NC_000913	23986	0	T	C	bias_e_value=3103230	bias_p_value=0.668562	consensus_score=233.2	fisher_strand_p_value=0.452055	frequency=1	ks_quality_p_value=0.677294	major_base=C	major_cov=32/40	major_frequency=9.863e-01	minor_base=T	minor_cov=1/0	new_cov=32/40	polymorphism_frequency=9.863e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=34/40
RA	1225	.	NC_000913	24085	0	A	G	bias_e_value=4451470	bias_p_value=0.959027	consensus_score=292.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.727748	major_base=G	major_cov=38/59	major_frequency=9.700e-01	minor_base=T	minor_cov=1/2	new_cov=38/59	polymorphism_frequency=9.700e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/0	total_cov=40/61
RA	1226	.	NC_000913	24091	0	C	T	bias_e_value=3079110	bias_p_value=0.663365	consensus_score=298.0	fisher_strand_p_value=0.408602	frequency=1	ks_quality_p_value=0.738639	major_base=T	major_cov=37/55	major_frequency=9.892e-01	minor_base=C	minor_cov=1/0	new_cov=37/55	polymorphism_frequency=9.892e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=38/55
RA	1227	.	NC_000913	24094	0	C	T	bias_e_value=3935390	bias_p_value=0.847842	consensus_score=287.8	fisher_strand_p_value=0.513856	frequency=1	ks_quality_p_value=0.976606	major_base=T	major_cov=37/53	major_frequency=9.783e-01	minor_base=G	minor_cov=0/2	new_cov=37/53	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/55
RA	1228	.	NC_000913	24133	0	G	A	bias_e_value=4639710	bias_p_value=0.999581	consensus_score=277.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971184	major_base=A	major_cov=38/52	major_frequency=9.474e-01	minor_base=G	minor_cov=2/3	new_cov=38/52	polymorphism_frequency=9.474e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=2/3	total_cov=40/55
RA	1229	.	NC_000913	24136	0	T	C	bias_e_value=4629250	bias_p_value=0.997327	consensus_score=300.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.927784	major_base=C	major_cov=38/53	major_frequency=9.579e-01	minor_base=T	minor_cov=2/2	new_cov=38/53	polymorphism_frequency=9.579e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=2/2	total_cov=40/55
RA	1230	.	NC_000913	24217	0	T	C	bias_e_value=3479060	bias_p_value=0.749531	consensus_score=271.3	fisher_strand_p_value=0.636992	frequency=1	ks_quality_p_value=0.599561	major_base=C	major_cov=33/54	major_frequency=9.560e-01	minor_base=T	minor_cov=2/2	new_cov=33/54	polymorphism_frequency=9.560e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=2/2	total_cov=35/56
RA	1231	.	NC_000913	24340	0	T	C	bias_e_value=4157530	bias_p_value=0.8957	consensus_score=160.1	fisher_strand_p_value=0.611483	frequency=1	ks_quality_p_value=0.947788	major_base=C	major_cov=27/26	major_frequency=9.298e-01	minor_base=T	minor_cov=1/3	new_cov=27/26	polymorphism_frequency=9.298e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/3	total_cov=28/29
RA	1232	.	NC_000913	24616	0	T	C	bias_e_value=3904600	bias_p_value=0.84121	consensus_score=213.4	fisher_strand_p_value=0.513043	frequency=1	ks_quality_p_value=0.95966	major_base=C	major_cov=40/28	major_frequency=9.714e-01	minor_base=T	minor_cov=2/0	new_cov=40/28	polymorphism_frequency=9.714e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=2/0	total_cov=42/28
RA	1233	.	NC_000913	24646	0	A	G	bias_e_value=3356100	bias_p_value=0.723041	consensus_score=230.5	fisher_strand_p_value=0.512645	frequency=1	ks_quality_p_value=0.693221	major_base=G	major_cov=44/31	major_frequency=9.740e-01	minor_base=A	minor_cov=2/0	new_cov=44/31	polymorphism_frequency=9.740e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=2/0	total_cov=46/31
RA	1234	.	NC_000913	24670	0	G	T	bias_e_value=2657410	bias_p_value=0.572515	consensus_score=206.8	fisher_strand_p_value=0.258242	frequency=1	ks_quality_p_value=0.90252	major_base=T	major_cov=42/33	major_frequency=9.615e-01	minor_base=A	minor_cov=3/0	new_cov=42/33	polymorphism_frequency=9.615e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=2/0	total_cov=47/34
RA	1235	.	NC_000913	24781	0	C	T	bias_e_value=3926980	bias_p_value=0.846031	consensus_score=215.6	fisher_strand_p_value=0.499218	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/38	major_frequency=9.722e-01	minor_base=G	minor_cov=0/2	new_cov=32/38	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/41
RA	1236	.	NC_000913	24799	0	G	A	bias_e_value=4641350	bias_p_value=0.999936	consensus_score=239.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988685	major_base=A	major_cov=32/42	major_frequency=9.737e-01	minor_base=G	minor_cov=1/1	new_cov=32/42	polymorphism_frequency=9.737e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=33/43
RA	1237	.	NC_000913	24935	0	T	G	bias_e_value=4530420	bias_p_value=0.976035	consensus_score=235.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.789216	major_base=G	major_cov=29/40	major_frequency=9.583e-01	minor_base=T	minor_cov=1/2	new_cov=29/40	polymorphism_frequency=9.583e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/2	total_cov=30/42
RA	1238	.	NC_000913	24977	0	C	T	bias_e_value=4178030	bias_p_value=0.900117	consensus_score=210.9	fisher_strand_p_value=0.599229	frequency=1	ks_quality_p_value=0.980862	major_base=T	major_cov=32/37	major_frequency=9.583e-01	minor_base=C	minor_cov=2/1	new_cov=32/37	polymorphism_frequency=9.583e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/1	total_cov=34/39
RA	1239	.	NC_000913	25598	0	A	G	bias_e_value=3187050	bias_p_value=0.686621	consensus_score=115.9	fisher_strand_p_value=0.597561	frequency=1	ks_quality_p_value=0.538457	major_base=G	major_cov=18/21	major_frequency=9.286e-01	minor_base=A	minor_cov=2/1	new_cov=18/21	polymorphism_frequency=9.286e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=2/1	total_cov=20/22
RA	1240	.	NC_000913	25677	0	G	A	bias_e_value=3633440	bias_p_value=0.782791	consensus_score=85.4	fisher_strand_p_value=0.485887	frequency=1	ks_quality_p_value=0.860708	major_base=A	major_cov=15/15	major_frequency=9.375e-01	minor_base=G	minor_cov=0/2	new_cov=15/15	polymorphism_frequency=9.375e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/2	total_cov=16/18
RA	1241	.	NC_000913	25685	0	G	A	bias_e_value=4639800	bias_p_value=0.999601	consensus_score=98.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971882	major_base=A	major_cov=16/17	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=16/17	polymorphism_frequency=9.706e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=16/18
RA	1242	.	NC_000913	26534	0	T	C	bias_e_value=4634150	bias_p_value=0.998383	consensus_score=193.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.943677	major_base=C	major_cov=32/37	major_frequency=9.200e-01	minor_base=T	minor_cov=3/3	new_cov=32/37	polymorphism_frequency=9.200e-01	polymorphism_score=3.8	prediction=consensus	ref_cov=3/3	total_cov=35/40
RA	1243	.	NC_000913	26606	0	T	C	bias_e_value=1607050	bias_p_value=0.346224	consensus_score=179.2	fisher_strand_p_value=0.107039	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/31	major_frequency=9.178e-01	minor_base=T	minor_cov=1/5	new_cov=36/31	polymorphism_frequency=9.178e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=1/5	total_cov=38/36
RA	1244	.	NC_000913	26609	0	C	T	bias_e_value=1693030	bias_p_value=0.364748	consensus_score=194.5	fisher_strand_p_value=0.186642	frequency=1	ks_quality_p_value=0.618688	major_base=T	major_cov=36/30	major_frequency=9.296e-01	minor_base=C	minor_cov=1/4	new_cov=36/30	polymorphism_frequency=9.296e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=1/4	total_cov=38/36
RA	1245	.	NC_000913	26621	0	A	G	bias_e_value=1179330	bias_p_value=0.254075	consensus_score=196.3	fisher_strand_p_value=0.358904	frequency=1	ks_quality_p_value=0.19287	major_base=G	major_cov=36/35	major_frequency=9.342e-01	minor_base=A	minor_cov=1/4	new_cov=36/35	polymorphism_frequency=9.342e-01	polymorphism_score=4.2	prediction=consensus	ref_cov=1/4	total_cov=37/39
RA	1246	.	NC_000913	26624	0	T	G	bias_e_value=2055540	bias_p_value=0.442846	consensus_score=232.4	fisher_strand_p_value=0.615321	frequency=1	ks_quality_p_value=0.250921	major_base=G	major_cov=38/37	major_frequency=9.494e-01	minor_base=T	minor_cov=1/3	new_cov=38/37	polymorphism_frequency=9.494e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=1/3	total_cov=39/40
RA	1247	.	NC_000913	26636	0	T	C	bias_e_value=3213990	bias_p_value=0.692424	consensus_score=199.0	fisher_strand_p_value=0.357991	frequency=1	ks_quality_p_value=0.913193	major_base=C	major_cov=37/34	major_frequency=9.342e-01	minor_base=T	minor_cov=1/4	new_cov=37/34	polymorphism_frequency=9.342e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/4	total_cov=38/38
RA	1248	.	NC_000913	26648	0	C	T	bias_e_value=1874280	bias_p_value=0.403796	consensus_score=204.4	fisher_strand_p_value=0.199222	frequency=1	ks_quality_p_value=0.673786	major_base=T	major_cov=36/32	major_frequency=9.315e-01	minor_base=C	minor_cov=1/4	new_cov=36/32	polymorphism_frequency=9.315e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=1/4	total_cov=37/37
RA	1249	.	NC_000913	26663	0	G	T	bias_e_value=4592580	bias_p_value=0.989428	consensus_score=160.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.858159	major_base=T	major_cov=29/30	major_frequency=9.219e-01	minor_base=G	minor_cov=2/3	new_cov=29/30	polymorphism_frequency=9.219e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=2/3	total_cov=32/34
RA	1250	.	NC_000913	26666	0	A	G	bias_e_value=2276670	bias_p_value=0.490488	consensus_score=195.4	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=0.36779	major_base=G	major_cov=32/31	major_frequency=9.692e-01	minor_base=A	minor_cov=0/2	new_cov=32/31	polymorphism_frequency=9.692e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/2	total_cov=32/33
RA	1251	.	NC_000913	27026	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=157.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/34	major_frequency=9.643e-01	minor_base=C	minor_cov=1/1	new_cov=20/34	polymorphism_frequency=9.643e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=21/35
RA	1252	.	NC_000913	27104	0	G	A	bias_e_value=4568560	bias_p_value=0.984253	consensus_score=159.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.827866	major_base=A	major_cov=19/34	major_frequency=9.464e-01	minor_base=G	minor_cov=1/2	new_cov=19/34	polymorphism_frequency=9.464e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/2	total_cov=21/36
RA	1253	.	NC_000913	27367	0	A	C	bias_e_value=1683360	bias_p_value=0.362664	consensus_score=161.6	fisher_strand_p_value=0.502262	frequency=1	ks_quality_p_value=0.227988	major_base=C	major_cov=28/22	major_frequency=9.615e-01	minor_base=A	minor_cov=2/0	new_cov=28/22	polymorphism_frequency=9.615e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=2/0	total_cov=30/22
RA	1254	.	NC_000913	45950	0	G	A	bias_e_value=4019440	bias_p_value=0.86595	consensus_score=188.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.529157	major_base=A	major_cov=29/29	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=29/29	polymorphism_frequency=9.831e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=30/29
RA	1255	.	NC_000913	45978	0	C	T	bias_e_value=2679580	bias_p_value=0.577291	consensus_score=167.1	fisher_strand_p_value=0.236364	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/25	major_frequency=9.636e-01	minor_base=G	minor_cov=0/2	new_cov=28/25	polymorphism_frequency=9.636e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=29/27
RA	1256	.	NC_000913	46028	0	T	C	bias_e_value=1518760	bias_p_value=0.327202	consensus_score=155.3	fisher_strand_p_value=0.209644	frequency=1	ks_quality_p_value=0.470687	major_base=C	major_cov=23/29	major_frequency=9.630e-01	minor_base=T	minor_cov=2/0	new_cov=23/29	polymorphism_frequency=9.630e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=2/0	total_cov=26/29
RA	1257	.	NC_000913	46247	0	T	C	bias_e_value=4573870	bias_p_value=0.985396	consensus_score=162.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.834039	major_base=C	major_cov=22/31	major_frequency=9.636e-01	minor_base=T	minor_cov=1/1	new_cov=22/31	polymorphism_frequency=9.636e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=23/32
RA	1258	.	NC_000913	46253	0	G	C	bias_e_value=4580130	bias_p_value=0.986747	consensus_score=168.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.841672	major_base=C	major_cov=22/30	major_frequency=9.630e-01	minor_base=G	minor_cov=1/1	new_cov=22/30	polymorphism_frequency=9.630e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/1	total_cov=23/31
RA	1259	.	NC_000913	46277	0	T	C	bias_e_value=4641270	bias_p_value=0.999919	consensus_score=154.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987261	major_base=C	major_cov=22/30	major_frequency=9.630e-01	minor_base=T	minor_cov=1/1	new_cov=22/30	polymorphism_frequency=9.630e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=23/31
RA	1260	.	NC_000913	46448	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=136.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/23	major_frequency=9.556e-01	minor_base=C	minor_cov=1/1	new_cov=20/23	polymorphism_frequency=9.556e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/1	total_cov=21/24
RA	1261	.	NC_000913	46634	0	G	T	bias_e_value=4047370	bias_p_value=0.871968	consensus_score=125.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.538749	major_base=T	major_cov=21/22	major_frequency=9.149e-01	minor_base=G	minor_cov=2/2	new_cov=21/22	polymorphism_frequency=9.149e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/2	total_cov=24/24
RA	1262	.	NC_000913	46652	0	A	G	bias_e_value=4144830	bias_p_value=0.892965	consensus_score=126.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.574582	major_base=G	major_cov=20/22	major_frequency=9.545e-01	minor_base=A	minor_cov=1/1	new_cov=20/22	polymorphism_frequency=9.545e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=21/23
RA	1263	.	NC_000913	46655	0	A	G	bias_e_value=4547410	bias_p_value=0.979696	consensus_score=124.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.805373	major_base=G	major_cov=20/22	major_frequency=9.545e-01	minor_base=A	minor_cov=1/1	new_cov=20/22	polymorphism_frequency=9.545e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=21/23
RA	1264	.	NC_000913	46661	0	T	C	bias_e_value=1757490	bias_p_value=0.378635	consensus_score=112.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.12199	major_base=C	major_cov=19/20	major_frequency=9.512e-01	minor_base=T	minor_cov=1/1	new_cov=19/20	polymorphism_frequency=9.512e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=20/22
RA	1265	.	NC_000913	46790	0	A	G	consensus_score=73.2	frequency=1	major_base=G	major_cov=10/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/20
RA	1266	.	NC_000913	46943	0	T	C	bias_e_value=3664610	bias_p_value=0.789506	consensus_score=69.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.425993	major_base=C	major_cov=8/17	major_frequency=9.259e-01	minor_base=T	minor_cov=1/1	new_cov=8/17	polymorphism_frequency=9.259e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=9/18
RA	1267	.	NC_000913	46976	0	A	G	bias_e_value=1648280	bias_p_value=0.355106	consensus_score=72.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.111047	major_base=G	major_cov=9/17	major_frequency=9.286e-01	minor_base=A	minor_cov=1/1	new_cov=9/17	polymorphism_frequency=9.286e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=10/18
RA	1268	.	NC_000913	47099	0	G	A	consensus_score=91.7	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	1269	.	NC_000913	47434	0	T	C	bias_e_value=4060020	bias_p_value=0.874694	consensus_score=167.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.543185	major_base=C	major_cov=27/25	major_frequency=9.811e-01	minor_base=T	minor_cov=1/0	new_cov=27/25	polymorphism_frequency=9.811e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=28/25
RA	1270	.	NC_000913	48033	0	T	G	bias_e_value=1621970	bias_p_value=0.349438	consensus_score=185.1	fisher_strand_p_value=0.47541	frequency=1	ks_quality_p_value=0.228186	major_base=G	major_cov=32/28	major_frequency=9.836e-01	minor_base=T	minor_cov=0/1	new_cov=32/28	polymorphism_frequency=9.836e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=32/29
RA	1271	.	NC_000913	66635	0	C	T	bias_e_value=4641610	bias_p_value=0.999991	consensus_score=177.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995708	major_base=T	major_cov=39/21	major_frequency=9.677e-01	minor_base=C	minor_cov=1/1	new_cov=39/21	polymorphism_frequency=9.677e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/1	total_cov=40/22
RA	1272	.	NC_000913	71170	0	T	C	consensus_score=146.0	frequency=1	major_base=C	major_cov=19/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/27
RA	1273	.	NC_000913	81102	0	G	A	bias_e_value=4640860	bias_p_value=0.999829	consensus_score=119.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.981567	major_base=A	major_cov=28/15	major_frequency=9.556e-01	minor_base=G	minor_cov=1/1	new_cov=28/15	polymorphism_frequency=9.556e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/1	total_cov=29/17
RA	1274	.	NC_000913	154182	0	C	T	bias_e_value=4390980	bias_p_value=0.945996	consensus_score=92.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.689898	major_base=T	major_cov=20/12	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=20/12	polymorphism_frequency=9.697e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=21/13
RA	1275	.	NC_000913	156068	0	A	G	bias_e_value=1959530	bias_p_value=0.422162	consensus_score=98.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.143535	major_base=G	major_cov=13/20	major_frequency=9.706e-01	minor_base=A	minor_cov=0/1	new_cov=13/20	polymorphism_frequency=9.706e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=13/21
RA	1276	.	NC_000913	271817	0	G	A	bias_e_value=3438850	bias_p_value=0.740868	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.5	fisher_strand_p_value=1	frequency=4.634e-01	ks_quality_p_value=0.373024	major_base=G	major_cov=21/23	major_frequency=5.366e-01	minor_base=A	minor_cov=18/20	new_cov=18/20	polymorphism_frequency=4.634e-01	polymorphism_score=102.2	prediction=polymorphism	ref_cov=21/23	total_cov=39/43
RA	1277	.	NC_000913	271822	0	G	A	bias_e_value=3594320	bias_p_value=0.774361	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.7	fisher_strand_p_value=1	frequency=4.578e-01	ks_quality_p_value=0.408663	major_base=G	major_cov=21/24	major_frequency=5.422e-01	minor_base=A	minor_cov=18/20	new_cov=18/20	polymorphism_frequency=4.578e-01	polymorphism_score=96.6	prediction=polymorphism	ref_cov=21/24	total_cov=39/44
RA	1278	.	NC_000913	271834	0	C	T	bias_e_value=3784710	bias_p_value=0.815379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.1	fisher_strand_p_value=0.821724	frequency=4.545e-01	ks_quality_p_value=0.556949	major_base=C	major_cov=18/24	major_frequency=5.455e-01	minor_base=T	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=4.545e-01	polymorphism_score=86.6	prediction=polymorphism	ref_cov=18/24	total_cov=34/43
RA	1279	.	NC_000913	271838	0	T	A	bias_e_value=3379140	bias_p_value=0.728003	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.2	fisher_strand_p_value=0.821291	frequency=4.605e-01	ks_quality_p_value=0.438583	major_base=T	major_cov=20/21	major_frequency=5.395e-01	minor_base=A	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=4.605e-01	polymorphism_score=94.9	prediction=polymorphism	ref_cov=20/21	total_cov=36/43
RA	1280	.	NC_000913	271876	0	A	G	bias_e_value=3260610	bias_p_value=0.702468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.0	fisher_strand_p_value=0.625014	frequency=3.243e-01	ks_quality_p_value=0.537605	major_base=A	major_cov=22/28	major_frequency=6.757e-01	minor_base=G	minor_cov=9/15	new_cov=9/15	polymorphism_frequency=3.243e-01	polymorphism_score=60.3	prediction=polymorphism	ref_cov=22/28	total_cov=31/43
RA	1281	.	NC_000913	271901	0	G	A	bias_e_value=3964570	bias_p_value=0.85413	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.3	fisher_strand_p_value=0.59633	frequency=2.778e-01	ks_quality_p_value=0.857038	major_base=G	major_cov=23/29	major_frequency=7.222e-01	minor_base=A	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=2.778e-01	polymorphism_score=44.5	prediction=polymorphism	ref_cov=23/29	total_cov=31/43
RA	1282	.	NC_000913	271943	0	A	G	bias_e_value=3037840	bias_p_value=0.654475	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.4	fisher_strand_p_value=0.573558	frequency=2.388e-01	ks_quality_p_value=0.513398	major_base=A	major_cov=24/27	major_frequency=7.612e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.388e-01	polymorphism_score=35.4	prediction=polymorphism	ref_cov=24/27	total_cov=31/37
RA	1283	.	NC_000913	271946	0	G	A	bias_e_value=3626170	bias_p_value=0.781223	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.9	fisher_strand_p_value=0.579616	frequency=2.286e-01	ks_quality_p_value=0.718429	major_base=G	major_cov=25/29	major_frequency=7.714e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.286e-01	polymorphism_score=33.1	prediction=polymorphism	ref_cov=25/29	total_cov=31/39
RA	1284	.	NC_000913	271964	0	C	T	bias_e_value=4641460	bias_p_value=0.999959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.7	fisher_strand_p_value=1	frequency=2.222e-01	ks_quality_p_value=0.990971	major_base=C	major_cov=22/27	major_frequency=7.778e-01	minor_base=T	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.222e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=22/27	total_cov=28/35
RA	1285	.	NC_000913	271967	0	T	G	bias_e_value=4641460	bias_p_value=0.999959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.0	fisher_strand_p_value=1	frequency=2.222e-01	ks_quality_p_value=0.990971	major_base=T	major_cov=22/27	major_frequency=7.778e-01	minor_base=G	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.222e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=22/27	total_cov=28/35
RA	1286	.	NC_000913	472849	0	A	G	bias_e_value=3804030	bias_p_value=0.819542	consensus_score=105.0	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.977497	major_base=G	major_cov=17/20	major_frequency=9.737e-01	minor_base=A	minor_cov=1/0	new_cov=17/20	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/20
RA	1287	.	NC_000913	495622	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=141.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/23	major_frequency=9.592e-01	minor_base=C	minor_cov=1/1	new_cov=24/23	polymorphism_frequency=9.592e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/1	total_cov=25/26
RA	1288	.	NC_000913	500988	0	C	T	bias_e_value=3804230	bias_p_value=0.819586	consensus_score=175.1	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.997406	major_base=T	major_cov=25/30	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=25/30	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/30
RA	1289	.	NC_000913	514434	0	C	T	bias_e_value=3909740	bias_p_value=0.842316	consensus_score=222.2	fisher_strand_p_value=0.493912	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/36	major_frequency=9.726e-01	minor_base=C	minor_cov=0/2	new_cov=35/36	polymorphism_frequency=9.726e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/2	total_cov=35/38
RA	1290	.	NC_000913	534742	0	G	A	bias_e_value=3835910	bias_p_value=0.826411	consensus_score=161.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.47206	major_base=A	major_cov=31/24	major_frequency=9.821e-01	minor_base=G	minor_cov=1/0	new_cov=31/24	polymorphism_frequency=9.821e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=32/24
RA	1291	.	NC_000913	582597	0	C	T	consensus_score=87.6	frequency=1	major_base=T	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1292	.	NC_000913	602835	0	G	A	bias_e_value=4640820	bias_p_value=0.999821	consensus_score=190.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.981143	major_base=A	major_cov=33/28	major_frequency=9.839e-01	minor_base=C	minor_cov=1/0	new_cov=33/28	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	1293	.	NC_000913	674259	0	G	A	bias_e_value=4641630	bias_p_value=0.999994	consensus_score=150.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996604	major_base=A	major_cov=26/22	major_frequency=9.796e-01	minor_base=G	minor_cov=1/0	new_cov=26/22	polymorphism_frequency=9.796e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=1/0	total_cov=27/23
RA	1294	.	NC_000913	677829	0	T	C	bias_e_value=3361990	bias_p_value=0.724309	consensus_score=63.9	fisher_strand_p_value=0.366667	frequency=1	ks_quality_p_value=0.972557	major_base=C	major_cov=4/19	major_frequency=9.200e-01	minor_base=T	minor_cov=1/1	new_cov=4/19	polymorphism_frequency=9.200e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=5/20
RA	1295	.	NC_000913	694941	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=149.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/24	major_frequency=9.615e-01	minor_base=G	minor_cov=1/1	new_cov=26/24	polymorphism_frequency=9.615e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=1/1	total_cov=29/25
RA	1296	.	NC_000913	696470	0	C	T	bias_e_value=3929500	bias_p_value=0.846574	consensus_score=73.3	fisher_strand_p_value=0.5	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/13	major_frequency=9.200e-01	minor_base=G	minor_cov=0/2	new_cov=10/13	polymorphism_frequency=9.200e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	1297	.	NC_000913	708774	0	G	A	consensus_score=107.1	frequency=1	major_base=A	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	1298	.	NC_000913	721604	0	G	A	consensus_score=188.8	frequency=1	major_base=A	major_cov=30/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	1299	.	NC_000913	780624	0	C	T	bias_e_value=3318870	bias_p_value=0.715019	consensus_score=106.8	fisher_strand_p_value=0.347703	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/20	major_frequency=8.864e-01	minor_base=C	minor_cov=4/1	new_cov=19/20	polymorphism_frequency=8.864e-01	polymorphism_score=2.5	prediction=consensus	ref_cov=4/1	total_cov=23/21
RA	1300	.	NC_000913	789580	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=179.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/28	major_frequency=9.508e-01	minor_base=C	minor_cov=2/1	new_cov=30/28	polymorphism_frequency=9.508e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/1	total_cov=32/30
RA	1301	.	NC_000913	822527	0	C	T	consensus_score=82.3	frequency=1	major_base=T	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	1302	.	NC_000913	883396	0	C	T	consensus_score=115.4	frequency=1	major_base=T	major_cov=14/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/20
RA	1303	.	NC_000913	908169	0	C	T	consensus_score=160.2	frequency=1	major_base=T	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	1304	.	NC_000913	968252	0	G	A	consensus_score=154.6	frequency=1	major_base=A	major_cov=19/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	1305	.	NC_000913	1054855	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=186.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/25	major_frequency=9.531e-01	minor_base=G	minor_cov=2/1	new_cov=36/25	polymorphism_frequency=9.531e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=2/1	total_cov=39/26
RA	1306	.	NC_000913	1066699	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=100.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/17	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	1307	.	NC_000913	1075234	0	C	T	bias_e_value=2859820	bias_p_value=0.616121	consensus_score=151.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.264394	major_base=T	major_cov=34/17	major_frequency=9.808e-01	minor_base=C	minor_cov=1/0	new_cov=34/17	polymorphism_frequency=9.808e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=35/17
RA	1308	.	NC_000913	1075528	0	C	T	bias_e_value=4240940	bias_p_value=0.913671	consensus_score=213.7	fisher_strand_p_value=0.619728	frequency=1	ks_quality_p_value=0.991375	major_base=T	major_cov=35/39	major_frequency=9.487e-01	minor_base=C	minor_cov=1/3	new_cov=35/39	polymorphism_frequency=9.487e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/3	total_cov=36/42
RA	1309	.	NC_000913	1078268	0	A	T	bias_e_value=4566790	bias_p_value=0.983872	consensus_score=145.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.825863	major_base=T	major_cov=22/26	major_frequency=9.796e-01	minor_base=A	minor_cov=0/1	new_cov=22/26	polymorphism_frequency=9.796e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=22/27
RA	1310	.	NC_000913	1086153	0	C	T	bias_e_value=2281900	bias_p_value=0.491613	consensus_score=50.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.181725	major_base=T	major_cov=8/11	major_frequency=9.500e-01	minor_base=C	minor_cov=0/1	new_cov=8/11	polymorphism_frequency=9.500e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=8/13
RA	1311	.	NC_000913	1090508	0	C	T	consensus_score=100.6	frequency=1	major_base=T	major_cov=23/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/9
RA	1312	.	NC_000913	1107209	0	C	T	consensus_score=124.3	frequency=1	major_base=T	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	1313	.	NC_000913	1109740	0	C	T	bias_e_value=3882580	bias_p_value=0.836465	consensus_score=56.1	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/10	major_frequency=9.048e-01	minor_base=G	minor_cov=0/2	new_cov=9/10	polymorphism_frequency=9.048e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	1314	.	NC_000913	1110033	0	G	A	bias_e_value=4641430	bias_p_value=0.999952	consensus_score=83.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990196	major_base=A	major_cov=20/8	major_frequency=9.655e-01	minor_base=G	minor_cov=1/0	new_cov=20/8	polymorphism_frequency=9.655e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=21/8
RA	1315	.	NC_000913	1112209	0	C	T	bias_e_value=3578290	bias_p_value=0.770908	consensus_score=186.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.404825	major_base=T	major_cov=34/26	major_frequency=9.677e-01	minor_base=C	minor_cov=1/1	new_cov=34/26	polymorphism_frequency=9.677e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=35/27
RA	1316	.	NC_000913	1112421	0	C	T	bias_e_value=3363300	bias_p_value=0.72459	consensus_score=173.5	fisher_strand_p_value=0.403509	frequency=1	ks_quality_p_value=0.884434	major_base=T	major_cov=34/22	major_frequency=9.825e-01	minor_base=C	minor_cov=0/1	new_cov=34/22	polymorphism_frequency=9.825e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=34/23
RA	1317	.	NC_000913	1114389	0	C	T	consensus_score=134.6	frequency=1	major_base=T	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	1318	.	NC_000913	1115185	0	C	T	bias_e_value=3743360	bias_p_value=0.806471	consensus_score=88.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.446439	major_base=T	major_cov=12/19	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=12/19	polymorphism_frequency=9.688e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=12/20
RA	1319	.	NC_000913	1117707	0	G	A	bias_e_value=4629450	bias_p_value=0.997371	consensus_score=128.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.928363	major_base=A	major_cov=22/19	major_frequency=9.762e-01	minor_base=G	minor_cov=1/0	new_cov=22/19	polymorphism_frequency=9.762e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=23/19
RA	1320	.	NC_000913	1120111	0	G	A	bias_e_value=3898880	bias_p_value=0.839978	consensus_score=144.0	fisher_strand_p_value=0.490612	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/24	major_frequency=9.600e-01	minor_base=T	minor_cov=0/2	new_cov=24/24	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	1321	.	NC_000913	1121547	0	G	A	consensus_score=77.5	frequency=1	major_base=A	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1322	.	NC_000913	1121762	0	G	A	consensus_score=130.1	frequency=1	major_base=A	major_cov=26/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/15
RA	1323	.	NC_000913	1123823	0	G	A	bias_e_value=3162920	bias_p_value=0.681422	consensus_score=80.8	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.68321	major_base=A	major_cov=12/15	major_frequency=9.643e-01	minor_base=G	minor_cov=1/0	new_cov=12/15	polymorphism_frequency=9.643e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=13/15
RA	1324	.	NC_000913	1123824	0	T	G	bias_e_value=3731100	bias_p_value=0.803831	consensus_score=82.2	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.997155	major_base=G	major_cov=11/15	major_frequency=9.630e-01	minor_base=T	minor_cov=1/0	new_cov=11/15	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=13/15
RA	1325	.	NC_000913	1126316	0	G	A	bias_e_value=4381730	bias_p_value=0.944002	consensus_score=108.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.684582	major_base=A	major_cov=22/16	major_frequency=9.500e-01	minor_base=G	minor_cov=1/1	new_cov=22/16	polymorphism_frequency=9.500e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=23/17
RA	1326	.	NC_000913	1126518	0	C	T	bias_e_value=3524880	bias_p_value=0.759402	consensus_score=159.0	fisher_strand_p_value=0.431373	frequency=1	ks_quality_p_value=0.909462	major_base=T	major_cov=29/21	major_frequency=9.804e-01	minor_base=C	minor_cov=0/1	new_cov=29/21	polymorphism_frequency=9.804e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=29/22
RA	1327	.	NC_000913	1127334	0	G	A	consensus_score=191.5	frequency=1	major_base=A	major_cov=36/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/23
RA	1328	.	NC_000913	1127338	0	G	A	consensus_score=184.7	frequency=1	major_base=A	major_cov=36/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/23
RA	1329	.	NC_000913	1129796	0	G	A	consensus_score=131.5	frequency=1	major_base=A	major_cov=22/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/18
RA	1330	.	NC_000913	1130210	0	G	A	bias_e_value=3311260	bias_p_value=0.713379	consensus_score=65.4	fisher_strand_p_value=0.346154	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/8	major_frequency=9.615e-01	minor_base=T	minor_cov=0/1	new_cov=17/8	polymorphism_frequency=9.615e-01	polymorphism_score=-6.9	prediction=consensus	ref_cov=0/0	total_cov=17/9
RA	1331	.	NC_000913	1130803	0	C	T	consensus_score=121.1	frequency=1	major_base=T	major_cov=16/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	1332	.	NC_000913	1133273	0	G	A	bias_e_value=4072890	bias_p_value=0.877465	consensus_score=122.1	fisher_strand_p_value=0.554757	frequency=1	ks_quality_p_value=0.987382	major_base=A	major_cov=26/16	major_frequency=9.333e-01	minor_base=G	minor_cov=1/2	new_cov=26/16	polymorphism_frequency=9.333e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/2	total_cov=27/18
RA	1333	.	NC_000913	1134466	0	C	T	bias_e_value=4641460	bias_p_value=0.999959	consensus_score=193.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990968	major_base=T	major_cov=26/36	major_frequency=9.688e-01	minor_base=C	minor_cov=1/1	new_cov=26/36	polymorphism_frequency=9.688e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=27/37
RA	1334	.	NC_000913	1138152	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=113.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/23	major_frequency=9.512e-01	minor_base=G	minor_cov=1/1	new_cov=16/23	polymorphism_frequency=9.512e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=18/25
RA	1335	.	NC_000913	1138533	0	C	T	bias_e_value=2780970	bias_p_value=0.599133	consensus_score=72.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.251851	major_base=T	major_cov=14/12	major_frequency=9.630e-01	minor_base=C	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=16/12
RA	1336	.	NC_000913	1138831	0	C	T	bias_e_value=3881210	bias_p_value=0.836169	consensus_score=145.9	fisher_strand_p_value=0.489362	frequency=1	ks_quality_p_value=0.991709	major_base=T	major_cov=22/24	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=22/24	polymorphism_frequency=9.787e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=1/0	total_cov=23/24
RA	1337	.	NC_000913	1141865	0	G	A	bias_e_value=964671	bias_p_value=0.207829	consensus_score=250.5	fisher_strand_p_value=0.0527088	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/44	major_frequency=9.535e-01	minor_base=G	minor_cov=4/0	new_cov=38/44	polymorphism_frequency=9.535e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=4/0	total_cov=43/44
RA	1338	.	NC_000913	1144974	0	C	T	bias_e_value=3566670	bias_p_value=0.768406	consensus_score=61.6	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=0.982833	major_base=T	major_cov=13/8	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=13/8	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	1339	.	NC_000913	1146110	0	C	T	bias_e_value=4640530	bias_p_value=0.999758	consensus_score=148.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978081	major_base=T	major_cov=21/26	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=21/26	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	1340	.	NC_000913	1146384	0	A	G	bias_e_value=4538800	bias_p_value=0.977842	consensus_score=129.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.797012	major_base=G	major_cov=19/22	major_frequency=9.535e-01	minor_base=A	minor_cov=1/1	new_cov=19/22	polymorphism_frequency=9.535e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=20/23
RA	1341	.	NC_000913	1147792	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=98.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/17	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=17/17	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	1342	.	NC_000913	1161403	0	G	A	bias_e_value=4641550	bias_p_value=0.999977	consensus_score=166.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993236	major_base=A	major_cov=21/30	major_frequency=9.808e-01	minor_base=T	minor_cov=0/1	new_cov=21/30	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/31
RA	1343	.	NC_000913	1169836	0	A	G	bias_e_value=3863120	bias_p_value=0.832273	consensus_score=112.8	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=0.986577	major_base=G	major_cov=19/17	major_frequency=9.730e-01	minor_base=A	minor_cov=0/1	new_cov=19/17	polymorphism_frequency=9.730e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=19/18
RA	1344	.	NC_000913	1171417	0	G	A	bias_e_value=3072740	bias_p_value=0.661993	consensus_score=133.0	fisher_strand_p_value=0.309524	frequency=1	ks_quality_p_value=0.971381	major_base=A	major_cov=12/29	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=12/29	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/29
RA	1345	.	NC_000913	1176602	0	C	T	consensus_score=157.8	frequency=1	major_base=T	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	1346	.	NC_000913	1180126	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=100.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/20	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=15/20	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/22
RA	1347	.	NC_000913	1181995	0	G	A	consensus_score=100.2	frequency=1	major_base=A	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	1348	.	NC_000913	1189980	0	A	G	bias_e_value=4635520	bias_p_value=0.99868	consensus_score=106.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.949056	major_base=G	major_cov=20/14	major_frequency=9.444e-01	minor_base=A	minor_cov=1/1	new_cov=20/14	polymorphism_frequency=9.444e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/1	total_cov=21/16
RA	1349	.	NC_000913	1193141	0	G	A	bias_e_value=3114040	bias_p_value=0.670891	consensus_score=110.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.308147	major_base=A	major_cov=16/20	major_frequency=9.730e-01	minor_base=G	minor_cov=0/1	new_cov=16/20	polymorphism_frequency=9.730e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=16/21
RA	1350	.	NC_000913	1194922	0	G	A	consensus_score=116.8	frequency=1	major_base=A	major_cov=18/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	1351	.	NC_000913	1201548	0	A	C	bias_e_value=4322570	bias_p_value=0.931256	consensus_score=53.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.65291	major_base=C	major_cov=9/10	major_frequency=9.500e-01	minor_base=.	minor_cov=1/0	new_cov=9/10	polymorphism_frequency=9.500e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	1352	.	NC_000913	1201550	0	C	A	bias_e_value=4511430	bias_p_value=0.971946	consensus_score=58.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.772677	major_base=A	major_cov=9/10	major_frequency=9.500e-01	minor_base=C	minor_cov=1/0	new_cov=9/10	polymorphism_frequency=9.500e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=10/10
RA	1353	.	NC_000913	1227656	0	G	A	consensus_score=68.8	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1354	.	NC_000913	1244908	0	C	T	consensus_score=75.4	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	1355	.	NC_000913	1252059	0	C	T	bias_e_value=3487370	bias_p_value=0.751322	consensus_score=79.3	fisher_strand_p_value=0.387097	frequency=1	ks_quality_p_value=0.991435	major_base=T	major_cov=19/11	major_frequency=9.677e-01	minor_base=G	minor_cov=0/1	new_cov=19/11	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1356	.	NC_000913	1252663	0	C	T	consensus_score=95.0	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	1357	.	NC_000913	1253002	0	C	T	bias_e_value=4618460	bias_p_value=0.995004	consensus_score=75.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.901723	major_base=T	major_cov=14/13	major_frequency=9.310e-01	minor_base=C	minor_cov=1/1	new_cov=14/13	polymorphism_frequency=9.310e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/1	total_cov=15/15
RA	1358	.	NC_000913	1282857	0	C	T	bias_e_value=4641600	bias_p_value=0.999988	consensus_score=191.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995094	major_base=T	major_cov=25/35	major_frequency=9.836e-01	minor_base=G	minor_cov=0/1	new_cov=25/35	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	1359	.	NC_000913	1306736	0	T	G	consensus_score=109.2	frequency=1	major_base=G	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	1360	.	NC_000913	1308684	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=89.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/20	major_frequency=9.697e-01	minor_base=T	minor_cov=0/1	new_cov=12/20	polymorphism_frequency=9.697e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=0/1	total_cov=12/21
RA	1361	.	NC_000913	1323798	0	G	A	bias_e_value=4638310	bias_p_value=0.999279	consensus_score=103.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962269	major_base=A	major_cov=18/18	major_frequency=9.231e-01	minor_base=G	minor_cov=1/2	new_cov=18/18	polymorphism_frequency=9.231e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/2	total_cov=19/20
RA	1362	.	NC_000913	1325054	0	G	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=88.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99754	major_base=A	major_cov=12/16	major_frequency=9.655e-01	minor_base=T	minor_cov=0/1	new_cov=12/16	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	1363	.	NC_000913	1331059	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=82.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/10	major_frequency=9.286e-01	minor_base=T	minor_cov=1/1	new_cov=16/10	polymorphism_frequency=9.286e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=17/11
RA	1364	.	NC_000913	1331060	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=75.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/10	major_frequency=9.286e-01	minor_base=C	minor_cov=1/1	new_cov=16/10	polymorphism_frequency=9.286e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/1	total_cov=17/11
RA	1365	.	NC_000913	1337394	0	A	G	consensus_score=124.1	frequency=1	major_base=G	major_cov=15/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/25
RA	1366	.	NC_000913	1341542	0	G	A	bias_e_value=2943290	bias_p_value=0.634104	consensus_score=124.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.278177	major_base=A	major_cov=18/26	major_frequency=9.362e-01	minor_base=G	minor_cov=1/2	new_cov=18/26	polymorphism_frequency=9.362e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=1/2	total_cov=19/28
RA	1367	.	NC_000913	1358859	0	T	C	bias_e_value=4640360	bias_p_value=0.999721	consensus_score=65.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.976472	major_base=C	major_cov=12/15	major_frequency=9.643e-01	minor_base=A	minor_cov=0/1	new_cov=12/15	polymorphism_frequency=9.643e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/1	total_cov=12/17
RA	1368	.	NC_000913	1375737	0	G	A	bias_e_value=3228020	bias_p_value=0.695446	consensus_score=156.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.329628	major_base=A	major_cov=21/31	major_frequency=9.455e-01	minor_base=G	minor_cov=1/2	new_cov=21/31	polymorphism_frequency=9.455e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=1/2	total_cov=23/35
RA	1369	.	NC_000913	1405758	0	G	A	consensus_score=88.1	frequency=1	major_base=A	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	1370	.	NC_000913	1466201	0	T	C	bias_e_value=3367130	bias_p_value=0.725415	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.2	fisher_strand_p_value=0.718539	frequency=2.174e-01	ks_quality_p_value=0.497786	major_base=T	major_cov=22/14	major_frequency=7.826e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.174e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=22/14	total_cov=30/20
RA	1371	.	NC_000913	1490095	0	G	A	consensus_score=126.5	frequency=1	major_base=A	major_cov=22/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/19
RA	1372	.	NC_000913	1497385	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=68.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/12	major_frequency=8.889e-01	minor_base=T	minor_cov=2/1	new_cov=12/12	polymorphism_frequency=8.889e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/1	total_cov=14/13
RA	1373	.	NC_000913	1497386	0	T	.	bias_e_value=4641650	bias_p_value=1	consensus_score=97.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=12/12	major_frequency=8.889e-01	minor_base=C	minor_cov=2/1	new_cov=12/12	polymorphism_frequency=8.889e-01	polymorphism_score=4.4	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	1374	.	NC_000913	1497387	0	C	A	bias_e_value=3868310	bias_p_value=0.83339	consensus_score=82.7	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/12	major_frequency=9.630e-01	minor_base=C	minor_cov=0/1	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=14/13
RA	1375	.	NC_000913	1497388	0	T	A	bias_e_value=4630420	bias_p_value=0.997581	consensus_score=73.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.931252	major_base=A	major_cov=13/13	major_frequency=9.630e-01	minor_base=G	minor_cov=1/0	new_cov=13/13	polymorphism_frequency=9.630e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	1376	.	NC_000913	1629247	0	C	T	bias_e_value=4614260	bias_p_value=0.994099	consensus_score=98.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.893345	major_base=T	major_cov=18/17	major_frequency=9.211e-01	minor_base=C	minor_cov=1/2	new_cov=18/17	polymorphism_frequency=9.211e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/2	total_cov=19/19
RA	1377	.	NC_000913	1632513	0	C	T	consensus_score=25.5	frequency=1	major_base=T	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	1378	.	NC_000913	1643679	0	A	T	consensus_score=109.4	frequency=1	major_base=T	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	1379	.	NC_000913	1652331	0	T	C	consensus_score=64.3	frequency=1	major_base=C	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	1380	.	NC_000913	1660102	0	C	T	consensus_score=146.7	frequency=1	major_base=T	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	1381	.	NC_000913	1667460	0	G	A	bias_e_value=4641130	bias_p_value=0.999887	consensus_score=108.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.984988	major_base=A	major_cov=18/16	major_frequency=9.714e-01	minor_base=C	minor_cov=1/0	new_cov=18/16	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	1382	.	NC_000913	1894839	0	T	C	bias_e_value=3177480	bias_p_value=0.684558	consensus_score=82.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.319947	major_base=C	major_cov=14/12	major_frequency=9.630e-01	minor_base=T	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=16/12
RA	1383	.	NC_000913	1914928	0	C	T	bias_e_value=2894560	bias_p_value=0.623606	consensus_score=133.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.270065	major_base=T	major_cov=21/23	major_frequency=9.778e-01	minor_base=C	minor_cov=0/1	new_cov=21/23	polymorphism_frequency=9.778e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=21/24
RA	1384	.	NC_000913	2040433	0	C	A	bias_e_value=4641580	bias_p_value=0.999985	consensus_score=111.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994616	major_base=A	major_cov=15/23	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=15/23	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/24
RA	1385	.	NC_000913	2111259	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=124.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=19/10	major_frequency=9.355e-01	minor_base=G	minor_cov=2/0	new_cov=19/10	polymorphism_frequency=9.355e-01	polymorphism_score=0.0	prediction=consensus	ref_cov=2/0	total_cov=21/10
RA	1386	.	NC_000913	2173363	0	C	.	consensus_score=183.0	frequency=1	major_base=.	major_cov=27/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/14
RA	1387	.	NC_000913	2173364	0	C	.	consensus_score=183.0	frequency=1	major_base=.	major_cov=27/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/14
RA	1388	.	NC_000913	2173448	0	C	T	bias_e_value=3178910	bias_p_value=0.684866	consensus_score=122.6	fisher_strand_p_value=0.489429	frequency=1	ks_quality_p_value=0.654265	major_base=T	major_cov=21/21	major_frequency=9.545e-01	minor_base=C	minor_cov=2/0	new_cov=21/21	polymorphism_frequency=9.545e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=2/0	total_cov=23/22
RA	1389	.	NC_000913	2204395	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=62.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=8/13	major_frequency=9.545e-01	minor_base=T	minor_cov=0/1	new_cov=8/13	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=8/14
RA	1390	.	NC_000913	2348366	0	C	A	bias_e_value=4017240	bias_p_value=0.865477	consensus_score=127.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.528415	major_base=A	major_cov=28/14	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=29/14
RA	1391	.	NC_000913	2388753	0	G	A	consensus_score=57.9	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	1392	.	NC_000913	2512423	0	C	T	consensus_score=106.2	frequency=1	major_base=T	major_cov=20/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/14
RA	1393	.	NC_000913	2512424	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=101.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/14	major_frequency=9.706e-01	minor_base=C	minor_cov=1/0	new_cov=19/14	polymorphism_frequency=9.706e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=20/14
RA	1394	.	NC_000913	2577937	0	T	C	bias_e_value=3796470	bias_p_value=0.817914	consensus_score=121.9	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.998651	major_base=C	major_cov=21/17	major_frequency=9.744e-01	minor_base=T	minor_cov=0/1	new_cov=21/17	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/18
RA	1395	.	NC_000913	2582272	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=133.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/27	major_frequency=9.608e-01	minor_base=C	minor_cov=1/1	new_cov=22/27	polymorphism_frequency=9.608e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=23/28
RA	1396	.	NC_000913	2587112	0	C	T	bias_e_value=2941790	bias_p_value=0.633781	consensus_score=101.9	fisher_strand_p_value=0.277925	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/13	major_frequency=8.947e-01	minor_base=G	minor_cov=4/0	new_cov=21/13	polymorphism_frequency=8.947e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/13
RA	1397	.	NC_000913	2600978	0	C	T	bias_e_value=4482320	bias_p_value=0.965672	consensus_score=123.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.74969	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=C	minor_cov=1/1	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=19/25
RA	1398	.	NC_000913	2613763	0	G	A	consensus_score=147.2	frequency=1	major_base=A	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	1399	.	NC_000913	2623838	0	G	A	bias_e_value=4641490	bias_p_value=0.999966	consensus_score=59.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991753	major_base=A	major_cov=10/11	major_frequency=9.130e-01	minor_base=G	minor_cov=1/1	new_cov=10/11	polymorphism_frequency=9.130e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/1	total_cov=11/12
RA	1400	.	NC_000913	2632711	0	G	A	bias_e_value=4499460	bias_p_value=0.969365	consensus_score=134.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.762912	major_base=A	major_cov=22/21	major_frequency=9.773e-01	minor_base=G	minor_cov=1/0	new_cov=22/21	polymorphism_frequency=9.773e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=24/21
RA	1401	.	NC_000913	2632955	0	A	C	bias_e_value=2.55002	bias_p_value=5.49378e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.8	fisher_strand_p_value=2.99836e-08	frequency=2.745e-01	ks_quality_p_value=1	major_base=A	major_cov=31/6	major_frequency=7.255e-01	minor_base=C	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.745e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=31/6	total_cov=31/20
RA	1402	.	NC_000913	2684686	0	A	C	consensus_score=137.9	frequency=1	major_base=C	major_cov=29/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/17
RA	1403	.	NC_000913	2722946	0	G	A	bias_e_value=3885910	bias_p_value=0.837182	consensus_score=129.4	fisher_strand_p_value=0.490248	frequency=1	ks_quality_p_value=0.99278	major_base=A	major_cov=23/23	major_frequency=9.583e-01	minor_base=C	minor_cov=2/0	new_cov=23/23	polymorphism_frequency=9.583e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	1404	.	NC_000913	2774947	0	G	A	bias_e_value=3336230	bias_p_value=0.71876	consensus_score=48.2	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.790338	major_base=A	major_cov=7/10	major_frequency=9.444e-01	minor_base=G	minor_cov=1/0	new_cov=7/10	polymorphism_frequency=9.444e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=8/10
RA	1405	.	NC_000913	2778119	0	C	T	consensus_score=86.5	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	1406	.	NC_000913	2806897	0	C	A	bias_e_value=4012310	bias_p_value=0.864413	consensus_score=56.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.526752	major_base=A	major_cov=8/16	major_frequency=9.231e-01	minor_base=C	minor_cov=0/2	new_cov=8/16	polymorphism_frequency=9.231e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/2	total_cov=9/18
RA	1407	.	NC_000913	2814595	0	C	T	consensus_score=153.5	frequency=1	major_base=T	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	1408	.	NC_000913	2849941	0	G	A	bias_e_value=3860430	bias_p_value=0.831693	consensus_score=147.1	fisher_strand_p_value=0.479167	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/25	major_frequency=9.792e-01	minor_base=G	minor_cov=1/0	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/25
RA	1409	.	NC_000913	2851821	0	G	A	bias_e_value=2804480	bias_p_value=0.6042	consensus_score=135.5	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=0.65306	major_base=A	major_cov=28/17	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=28/17	polymorphism_frequency=9.783e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=28/19
RA	1410	.	NC_000913	2867455	0	G	A	consensus_score=160.1	frequency=1	major_base=A	major_cov=20/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/30
RA	1411	.	NC_000913	2880635	0	T	C	consensus_score=116.8	frequency=1	major_base=C	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	1412	.	NC_000913	2881212	0	C	T	bias_e_value=4253220	bias_p_value=0.916315	consensus_score=62.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.61986	major_base=T	major_cov=13/9	major_frequency=9.565e-01	minor_base=C	minor_cov=1/0	new_cov=13/9	polymorphism_frequency=9.565e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=14/9
RA	1413	.	NC_000913	2883115	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=87.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/14	major_frequency=9.355e-01	minor_base=C	minor_cov=1/1	new_cov=15/14	polymorphism_frequency=9.355e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=17/15
RA	1414	.	NC_000913	2886731	0	T	C	consensus_score=71.1	frequency=1	major_base=C	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	1415	.	NC_000913	2890626	0	G	A	bias_e_value=3191520	bias_p_value=0.687582	consensus_score=158.6	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=0.671028	major_base=A	major_cov=27/24	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=27/24	polymorphism_frequency=9.808e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=27/25
RA	1416	.	NC_000913	2893219	0	C	T	bias_e_value=3850010	bias_p_value=0.829448	consensus_score=172.2	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.988881	major_base=T	major_cov=28/25	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	1417	.	NC_000913	2893647	0	C	T	bias_e_value=4490600	bias_p_value=0.967457	consensus_score=191.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.755976	major_base=T	major_cov=34/27	major_frequency=9.839e-01	minor_base=C	minor_cov=1/0	new_cov=34/27	polymorphism_frequency=9.839e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=35/28
RA	1418	.	NC_000913	2894839	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=149.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/22	major_frequency=9.796e-01	minor_base=A	minor_cov=1/0	new_cov=26/22	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	1419	.	NC_000913	2916216	0	G	A	bias_e_value=4039410	bias_p_value=0.870252	consensus_score=93.1	fisher_strand_p_value=0.603861	frequency=1	ks_quality_p_value=0.887598	major_base=A	major_cov=16/18	major_frequency=9.189e-01	minor_base=G	minor_cov=2/1	new_cov=16/18	polymorphism_frequency=9.189e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=2/1	total_cov=18/19
RA	1420	.	NC_000913	2926772	0	C	A	consensus_score=145.2	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	1421	.	NC_000913	2934092	0	G	A	consensus_score=61.9	frequency=1	major_base=A	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	1422	.	NC_000913	3025601	0	T	.	bias_e_value=3035610	bias_p_value=0.653993	consensus_score=141.3	fisher_strand_p_value=0.294069	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=14/22	major_frequency=9.000e-01	minor_base=T	minor_cov=3/1	new_cov=14/22	polymorphism_frequency=9.000e-01	polymorphism_score=11.8	prediction=consensus	ref_cov=3/1	total_cov=17/23
RA	1423	.	NC_000913	3070858	0	T	G	bias_e_value=2296820	bias_p_value=0.494828	consensus_score=199.6	fisher_strand_p_value=0.183616	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/24	major_frequency=9.667e-01	minor_base=T	minor_cov=0/2	new_cov=34/24	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=34/26
RA	1424	.	NC_000913	3096754	0	G	A	bias_e_value=1738510	bias_p_value=0.374546	consensus_score=152.0	fisher_strand_p_value=0.12044	frequency=1	ks_quality_p_value=0.9968	major_base=A	major_cov=25/23	major_frequency=9.231e-01	minor_base=C	minor_cov=4/0	new_cov=25/23	polymorphism_frequency=9.231e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/23
RA	1425	.	NC_000913	3207549	0	G	.	consensus_score=225.0	frequency=1	major_base=.	major_cov=29/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/21
RA	1426	.	NC_000913	3256301	0	G	A	bias_e_value=3805420	bias_p_value=0.819842	consensus_score=118.8	fisher_strand_p_value=0.463415	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/18	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=22/18	polymorphism_frequency=9.756e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/1	total_cov=22/19
RA	1427	.	NC_000913	3279276	0	C	G	bias_e_value=4546260	bias_p_value=0.979448	consensus_score=159.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.804234	major_base=G	major_cov=22/29	major_frequency=9.444e-01	minor_base=C	minor_cov=1/2	new_cov=22/29	polymorphism_frequency=9.444e-01	polymorphism_score=2.1	prediction=consensus	ref_cov=1/2	total_cov=23/31
RA	1428	.	NC_000913	3296481	0	G	A	bias_e_value=4641360	bias_p_value=0.999937	consensus_score=212.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988757	major_base=A	major_cov=34/32	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=34/32	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	1429	.	NC_000913	3329743	0	G	T	bias_e_value=3731660	bias_p_value=0.803951	consensus_score=107.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.443328	major_base=T	major_cov=17/17	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=17/17	polymorphism_frequency=9.714e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=17/18
RA	1430	.	NC_000913	3364664	0	G	A	bias_e_value=4397390	bias_p_value=0.947375	consensus_score=122.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.693641	major_base=A	major_cov=19/23	major_frequency=9.545e-01	minor_base=G	minor_cov=1/1	new_cov=19/23	polymorphism_frequency=9.545e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=21/24
RA	1431	.	NC_000913	3388041	0	T	G	bias_e_value=4500660	bias_p_value=0.969624	consensus_score=162.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.763868	major_base=G	major_cov=26/28	major_frequency=9.818e-01	minor_base=T	minor_cov=0/1	new_cov=26/28	polymorphism_frequency=9.818e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/1	total_cov=26/29
RA	1432	.	NC_000913	3400207	0	G	A	bias_e_value=3958500	bias_p_value=0.852821	consensus_score=210.2	fisher_strand_p_value=0.509132	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/30	major_frequency=9.726e-01	minor_base=C	minor_cov=2/0	new_cov=41/30	polymorphism_frequency=9.726e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=44/31
RA	1433	.	NC_000913	3411689	0	G	T	bias_e_value=4632930	bias_p_value=0.998122	consensus_score=71.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.939338	major_base=T	major_cov=16/11	major_frequency=9.310e-01	minor_base=G	minor_cov=1/1	new_cov=16/11	polymorphism_frequency=9.310e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/1	total_cov=17/14
RA	1434	.	NC_000913	3433665	0	C	T	bias_e_value=3741910	bias_p_value=0.806158	consensus_score=134.6	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=0.934584	major_base=T	major_cov=23/20	major_frequency=9.773e-01	minor_base=C	minor_cov=0/1	new_cov=23/20	polymorphism_frequency=9.773e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=23/21
RA	1435	.	NC_000913	3433900	0	C	T	bias_e_value=3244460	bias_p_value=0.698987	consensus_score=122.1	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=0.681515	major_base=T	major_cov=20/21	major_frequency=9.535e-01	minor_base=C	minor_cov=2/0	new_cov=20/21	polymorphism_frequency=9.535e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=2/0	total_cov=23/21
RA	1436	.	NC_000913	3474425	0	T	G	bias_e_value=4102170	bias_p_value=0.883774	consensus_score=90.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.55841	major_base=G	major_cov=15/16	major_frequency=9.688e-01	minor_base=T	minor_cov=1/0	new_cov=15/16	polymorphism_frequency=9.688e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=16/16
RA	1437	.	NC_000913	3481131	0	G	A	bias_e_value=3513890	bias_p_value=0.757034	consensus_score=143.8	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=0.996143	major_base=A	major_cov=17/28	major_frequency=9.783e-01	minor_base=C	minor_cov=1/0	new_cov=17/28	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	1438	.	NC_000913	3486386	0	G	A	bias_e_value=75.8141	bias_p_value=1.63334e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.8	fisher_strand_p_value=1.13436e-06	frequency=2.895e-01	ks_quality_p_value=0.978786	major_base=G	major_cov=23/4	major_frequency=7.105e-01	minor_base=A	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=2.895e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=23/4	total_cov=24/15
RA	1439	.	NC_000913	3486502	0	C	T	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=159.6	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/23	major_frequency=9.804e-01	minor_base=C	minor_cov=0/1	new_cov=27/23	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/24
RA	1440	.	NC_000913	3500129	0	G	A	bias_e_value=844854	bias_p_value=0.182016	consensus_score=96.8	fisher_strand_p_value=0.272727	frequency=1	ks_quality_p_value=0.162013	major_base=A	major_cov=8/24	major_frequency=9.697e-01	minor_base=G	minor_cov=1/0	new_cov=8/24	polymorphism_frequency=9.697e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=9/24
RA	1441	.	NC_000913	3511466	0	C	T	bias_e_value=1194100	bias_p_value=0.257258	consensus_score=223.2	fisher_strand_p_value=0.512128	frequency=1	ks_quality_p_value=0.137501	major_base=T	major_cov=41/29	major_frequency=9.722e-01	minor_base=C	minor_cov=2/0	new_cov=41/29	polymorphism_frequency=9.722e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=43/29
RA	1442	.	NC_000913	3517171	0	G	A	bias_e_value=2645890	bias_p_value=0.570031	consensus_score=134.2	fisher_strand_p_value=0.607011	frequency=1	ks_quality_p_value=0.381159	major_base=A	major_cov=16/31	major_frequency=9.216e-01	minor_base=G	minor_cov=2/2	new_cov=16/31	polymorphism_frequency=9.216e-01	polymorphism_score=3.0	prediction=consensus	ref_cov=2/2	total_cov=18/33
RA	1443	.	NC_000913	3555047	0	G	T	bias_e_value=2433300	bias_p_value=0.524232	consensus_score=86.0	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=0.872993	major_base=T	major_cov=17/20	major_frequency=9.487e-01	minor_base=G	minor_cov=2/0	new_cov=17/20	polymorphism_frequency=9.487e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=2/0	total_cov=20/20
RA	1444	.	NC_000913	3555048	0	T	G	bias_e_value=2572660	bias_p_value=0.554254	consensus_score=105.9	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=0.956617	major_base=G	major_cov=17/20	major_frequency=9.487e-01	minor_base=T	minor_cov=2/0	new_cov=17/20	polymorphism_frequency=9.487e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=2/0	total_cov=20/20
RA	1445	.	NC_000913	3560362	0	G	A	bias_e_value=3882600	bias_p_value=0.83647	consensus_score=141.8	fisher_strand_p_value=0.493061	frequency=1	ks_quality_p_value=0.985112	major_base=A	major_cov=23/25	major_frequency=9.600e-01	minor_base=C	minor_cov=0/2	new_cov=23/25	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/27
RA	1446	.	NC_000913	3560455	1	.	G	consensus_score=147.4	frequency=1	major_base=G	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1447	.	NC_000913	3591074	0	G	A	bias_e_value=3459180	bias_p_value=0.745247	consensus_score=134.3	fisher_strand_p_value=0.488889	frequency=1	ks_quality_p_value=0.772143	major_base=A	major_cov=21/23	major_frequency=9.778e-01	minor_base=G	minor_cov=1/0	new_cov=21/23	polymorphism_frequency=9.778e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=22/23
RA	1448	.	NC_000913	3630221	0	C	T	bias_e_value=4033300	bias_p_value=0.868936	consensus_score=213.6	fisher_strand_p_value=0.645687	frequency=1	ks_quality_p_value=0.826843	major_base=T	major_cov=29/42	major_frequency=9.467e-01	minor_base=C	minor_cov=1/3	new_cov=29/42	polymorphism_frequency=9.467e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=1/3	total_cov=30/46
RA	1449	.	NC_000913	3646970	0	G	T	bias_e_value=4231860	bias_p_value=0.911713	consensus_score=224.6	fisher_strand_p_value=0.61039	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/36	major_frequency=9.615e-01	minor_base=G	minor_cov=1/2	new_cov=39/36	polymorphism_frequency=9.615e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=1/2	total_cov=41/40
RA	1450	.	NC_000913	3647428	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=139.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/26	major_frequency=9.388e-01	minor_base=G	minor_cov=1/2	new_cov=20/26	polymorphism_frequency=9.388e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	1451	.	NC_000913	3647949	0	C	T	consensus_score=130.7	frequency=1	major_base=T	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	1452	.	NC_000913	3664594	0	G	A	bias_e_value=742649	bias_p_value=0.159997	consensus_score=52.4	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.0768103	major_base=A	major_cov=9/10	major_frequency=9.048e-01	minor_base=G	minor_cov=0/2	new_cov=9/10	polymorphism_frequency=9.048e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=0/2	total_cov=11/12
RA	1453	.	NC_000913	3665576	0	C	T	bias_e_value=3791000	bias_p_value=0.816736	consensus_score=87.8	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.989474	major_base=T	major_cov=15/12	major_frequency=9.643e-01	minor_base=G	minor_cov=0/1	new_cov=15/12	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	1454	.	NC_000913	3707883	0	G	A	consensus_score=84.3	frequency=1	major_base=A	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1455	.	NC_000913	3707947	0	C	A	consensus_score=48.4	frequency=1	major_base=A	major_cov=10/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/6
RA	1456	.	NC_000913	3719429	0	G	A	consensus_score=139.4	frequency=1	major_base=A	major_cov=15/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/29
RA	1457	.	NC_000913	3725176	0	T	G	bias_e_value=4629450	bias_p_value=0.997371	consensus_score=115.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.928363	major_base=G	major_cov=19/22	major_frequency=9.762e-01	minor_base=T	minor_cov=0/1	new_cov=19/22	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=19/23
RA	1458	.	NC_000913	3729440	0	C	T	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=168.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997101	major_base=T	major_cov=28/24	major_frequency=9.811e-01	minor_base=A	minor_cov=1/0	new_cov=28/24	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	1459	.	NC_000913	3729441	0	C	T	consensus_score=168.8	frequency=1	major_base=T	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	1460	.	NC_000913	3730560	0	C	T	bias_e_value=2718250	bias_p_value=0.585622	consensus_score=128.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.242189	major_base=T	major_cov=19/22	major_frequency=9.535e-01	minor_base=C	minor_cov=1/1	new_cov=19/22	polymorphism_frequency=9.535e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=20/23
RA	1461	.	NC_000913	3770539	0	C	T	bias_e_value=4516760	bias_p_value=0.973094	consensus_score=166.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.77718	major_base=T	major_cov=36/24	major_frequency=9.375e-01	minor_base=C	minor_cov=3/1	new_cov=36/24	polymorphism_frequency=9.375e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=3/1	total_cov=39/26
RA	1462	.	NC_000913	3773173	0	G	.	bias_e_value=4003340	bias_p_value=0.862481	consensus_score=192.4	fisher_strand_p_value=0.542041	frequency=1	ks_quality_p_value=0.966256	major_base=.	major_cov=30/17	major_frequency=9.400e-01	minor_base=G	minor_cov=3/0	new_cov=30/17	polymorphism_frequency=9.400e-01	polymorphism_score=4.5	prediction=consensus	ref_cov=3/0	total_cov=34/17
RA	1463	.	NC_000913	3773176	0	C	T	bias_e_value=4574150	bias_p_value=0.985456	consensus_score=178.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.834371	major_base=T	major_cov=34/22	major_frequency=9.825e-01	minor_base=C	minor_cov=1/0	new_cov=34/22	polymorphism_frequency=9.825e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=36/22
RA	1464	.	NC_000913	3815883	1	.	C	bias_e_value=2766450	bias_p_value=0.596005	consensus_score=135.6	fisher_strand_p_value=0.356832	frequency=1	ks_quality_p_value=0.69946	major_base=C	major_cov=27/15	major_frequency=8.936e-01	minor_base=.	minor_cov=2/3	new_cov=27/15	polymorphism_frequency=8.936e-01	polymorphism_score=8.5	prediction=consensus	ref_cov=2/3	total_cov=29/18
RA	1465	.	NC_000913	3834564	0	G	A	bias_e_value=1984690	bias_p_value=0.427582	consensus_score=173.9	fisher_strand_p_value=0.498747	frequency=1	ks_quality_p_value=0.293418	major_base=A	major_cov=30/25	major_frequency=9.649e-01	minor_base=G	minor_cov=2/0	new_cov=30/25	polymorphism_frequency=9.649e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/0	total_cov=33/25
RA	1466	.	NC_000913	3875521	0	T	C	bias_e_value=991782	bias_p_value=0.21367	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.5	fisher_strand_p_value=0.0547851	frequency=2.143e-01	ks_quality_p_value=0.998558	major_base=T	major_cov=16/17	major_frequency=7.857e-01	minor_base=C	minor_cov=8/1	new_cov=8/1	polymorphism_frequency=2.143e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=16/17	total_cov=24/19
RA	1467	.	NC_000913	3875531	0	C	T	bias_e_value=65142.5	bias_p_value=0.0140343	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.8	fisher_strand_p_value=0.00203988	frequency=2.143e-01	ks_quality_p_value=0.949378	major_base=C	major_cov=14/19	major_frequency=7.857e-01	minor_base=T	minor_cov=9/0	new_cov=9/0	polymorphism_frequency=2.143e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=14/19	total_cov=23/19
RA	1468	.	NC_000913	3875532	0	A	T	bias_e_value=23961.4	bias_p_value=0.00516226	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.6	fisher_strand_p_value=0.000659196	frequency=2.439e-01	ks_quality_p_value=0.932959	major_base=A	major_cov=12/19	major_frequency=7.561e-01	minor_base=T	minor_cov=10/0	new_cov=10/0	polymorphism_frequency=2.439e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=12/19	total_cov=23/19
RA	1469	.	NC_000913	3926991	0	G	A	consensus_score=135.8	frequency=1	major_base=A	major_cov=15/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/29
RA	1470	.	NC_000913	3931779	0	T	C	consensus_score=77.9	frequency=1	major_base=C	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	1471	.	NC_000913	3966530	0	C	T	bias_e_value=900503	bias_p_value=0.194005	consensus_score=55.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0480824	major_base=T	major_cov=14/11	major_frequency=8.065e-01	minor_base=C	minor_cov=3/3	new_cov=14/11	polymorphism_frequency=8.065e-01	polymorphism_score=10.2	prediction=consensus	ref_cov=3/3	total_cov=17/14
RA	1472	.	NC_000913	3966531	0	C	T	bias_e_value=21933.5	bias_p_value=0.00472536	consensus_score=51.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.000556305	major_base=T	major_cov=14/11	major_frequency=8.065e-01	minor_base=C	minor_cov=3/3	new_cov=14/11	polymorphism_frequency=8.065e-01	polymorphism_score=10.8	prediction=consensus	ref_cov=3/3	total_cov=17/14
RA	1473	.	NC_000913	3967770	0	C	T	bias_e_value=4638140	bias_p_value=0.999244	consensus_score=86.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.961358	major_base=T	major_cov=11/17	major_frequency=9.655e-01	minor_base=C	minor_cov=0/1	new_cov=11/17	polymorphism_frequency=9.655e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=11/19
RA	1474	.	NC_000913	4037496	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.3	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=1	major_base=A	major_cov=15/13	major_frequency=5.714e-01	minor_base=T	minor_cov=11/10	new_cov=11/10	polymorphism_frequency=4.286e-01	polymorphism_score=59.5	prediction=polymorphism	ref_cov=15/13	total_cov=26/23
RA	1475	.	NC_000913	4133252	0	C	T	bias_e_value=4019650	bias_p_value=0.865997	consensus_score=63.3	fisher_strand_p_value=0.529231	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/15	major_frequency=9.231e-01	minor_base=G	minor_cov=0/2	new_cov=9/15	polymorphism_frequency=9.231e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	1476	.	NC_000913	4215347	0	T	A	bias_e_value=2308750	bias_p_value=0.497398	consensus_score=60.6	fisher_strand_p_value=0.35	frequency=1	ks_quality_p_value=0.52896	major_base=A	major_cov=6/13	major_frequency=9.500e-01	minor_base=T	minor_cov=1/0	new_cov=6/13	polymorphism_frequency=9.500e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=7/13
RA	1477	.	NC_000913	4223638	0	T	C	consensus_score=137.4	frequency=1	major_base=C	major_cov=9/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/37
RA	1478	.	NC_000913	4226699	0	G	A	bias_e_value=4547150	bias_p_value=0.97964	consensus_score=173.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.805115	major_base=A	major_cov=37/20	major_frequency=9.661e-01	minor_base=G	minor_cov=1/1	new_cov=37/20	polymorphism_frequency=9.661e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=38/21
RA	1479	.	NC_000913	4281093	0	G	A	consensus_score=206.3	frequency=1	major_base=A	major_cov=26/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/40
RA	1480	.	NC_000913	4283043	0	G	A	bias_e_value=3604450	bias_p_value=0.776545	consensus_score=38.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.411112	major_base=A	major_cov=9/7	major_frequency=8.889e-01	minor_base=G	minor_cov=1/1	new_cov=9/7	polymorphism_frequency=8.889e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/1	total_cov=11/8
RA	1481	.	NC_000913	4283465	0	G	A	bias_e_value=4637030	bias_p_value=0.999005	consensus_score=138.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.95572	major_base=A	major_cov=29/17	major_frequency=9.583e-01	minor_base=G	minor_cov=1/1	new_cov=29/17	polymorphism_frequency=9.583e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=30/18
RA	1482	.	NC_000913	4284646	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=116.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/17	major_frequency=9.512e-01	minor_base=G	minor_cov=1/1	new_cov=22/17	polymorphism_frequency=9.512e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=23/19
RA	1483	.	NC_000913	4285238	0	G	A	consensus_score=243.3	frequency=1	major_base=A	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	1484	.	NC_000913	4288385	0	G	A	consensus_score=138.3	frequency=1	major_base=A	major_cov=22/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	1485	.	NC_000913	4296380	1	.	C	bias_e_value=2948800	bias_p_value=0.635292	consensus_score=99.2	fisher_strand_p_value=0.324324	frequency=1	ks_quality_p_value=0.860579	major_base=C	major_cov=11/25	major_frequency=9.730e-01	minor_base=.	minor_cov=1/0	new_cov=11/25	polymorphism_frequency=9.730e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=12/25
RA	1486	.	NC_000913	4296380	2	.	G	bias_e_value=3038670	bias_p_value=0.654652	consensus_score=100.3	fisher_strand_p_value=0.324324	frequency=1	ks_quality_p_value=0.908377	major_base=G	major_cov=11/25	major_frequency=9.730e-01	minor_base=.	minor_cov=1/0	new_cov=11/25	polymorphism_frequency=9.730e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=1/0	total_cov=12/25
RA	1487	.	NC_000913	4296428	0	G	A	bias_e_value=4615010	bias_p_value=0.99426	consensus_score=110.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.894783	major_base=A	major_cov=14/27	major_frequency=9.535e-01	minor_base=G	minor_cov=0/2	new_cov=14/27	polymorphism_frequency=9.535e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/2	total_cov=16/29
RA	1488	.	NC_000913	4297782	0	G	A	bias_e_value=4632670	bias_p_value=0.998065	consensus_score=151.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.938447	major_base=A	major_cov=27/23	major_frequency=9.804e-01	minor_base=G	minor_cov=1/0	new_cov=27/23	polymorphism_frequency=9.804e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=28/23
RA	1489	.	NC_000913	4298401	0	G	A	bias_e_value=2996960	bias_p_value=0.645667	consensus_score=224.4	fisher_strand_p_value=0.625378	frequency=1	ks_quality_p_value=0.459452	major_base=A	major_cov=34/41	major_frequency=9.494e-01	minor_base=G	minor_cov=1/3	new_cov=34/41	polymorphism_frequency=9.494e-01	polymorphism_score=2.1	prediction=consensus	ref_cov=1/3	total_cov=35/44
RA	1490	.	NC_000913	4306035	0	C	T	consensus_score=153.9	frequency=1	major_base=T	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	1491	.	NC_000913	4306960	0	G	A	bias_e_value=3221300	bias_p_value=0.694	consensus_score=188.9	fisher_strand_p_value=0.607143	frequency=1	ks_quality_p_value=0.540774	major_base=A	major_cov=32/29	major_frequency=9.531e-01	minor_base=G	minor_cov=1/2	new_cov=32/29	polymorphism_frequency=9.531e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=1/2	total_cov=33/31
RA	1492	.	NC_000913	4307151	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=125.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/23	major_frequency=9.362e-01	minor_base=G	minor_cov=1/2	new_cov=21/23	polymorphism_frequency=9.362e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/2	total_cov=22/25
RA	1493	.	NC_000913	4318215	0	G	A	bias_e_value=207988	bias_p_value=0.0448089	consensus_score=162.7	fisher_strand_p_value=0.00762541	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/16	major_frequency=9.375e-01	minor_base=G	minor_cov=0/4	new_cov=44/16	polymorphism_frequency=9.375e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/4	total_cov=45/20
RA	1494	.	NC_000913	4320007	0	G	A	bias_e_value=4638420	bias_p_value=0.999303	consensus_score=223.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96289	major_base=A	major_cov=34/37	major_frequency=9.726e-01	minor_base=C	minor_cov=1/1	new_cov=34/37	polymorphism_frequency=9.726e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/38
RA	1495	.	NC_000913	4320344	0	G	A	bias_e_value=2176160	bias_p_value=0.468833	consensus_score=136.2	fisher_strand_p_value=0.168649	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/20	major_frequency=9.038e-01	minor_base=G	minor_cov=1/4	new_cov=27/20	polymorphism_frequency=9.038e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=1/4	total_cov=30/27
RA	1496	.	NC_000913	4320416	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=202.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/29	major_frequency=9.324e-01	minor_base=G	minor_cov=3/2	new_cov=40/29	polymorphism_frequency=9.324e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=3/2	total_cov=46/31
RA	1497	.	NC_000913	4320543	0	G	A	bias_e_value=4570480	bias_p_value=0.984666	consensus_score=287.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.830065	major_base=A	major_cov=55/40	major_frequency=9.694e-01	minor_base=G	minor_cov=2/1	new_cov=55/40	polymorphism_frequency=9.694e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/1	total_cov=58/42
RA	1498	.	NC_000913	4321488	0	G	A	bias_e_value=4631940	bias_p_value=0.997908	consensus_score=207.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93602	major_base=A	major_cov=35/36	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=35/36	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/36
RA	1499	.	NC_000913	4321603	0	T	C	bias_e_value=4540870	bias_p_value=0.978287	consensus_score=223.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.798983	major_base=C	major_cov=38/37	major_frequency=9.740e-01	minor_base=T	minor_cov=1/1	new_cov=38/37	polymorphism_frequency=9.740e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/1	total_cov=40/38
RA	1500	.	NC_000913	4322786	0	G	A	bias_e_value=1626150	bias_p_value=0.350339	consensus_score=261.3	fisher_strand_p_value=0.11698	frequency=1	ks_quality_p_value=0.930824	major_base=A	major_cov=47/43	major_frequency=9.677e-01	minor_base=G	minor_cov=0/3	new_cov=47/43	polymorphism_frequency=9.677e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/3	total_cov=48/46
RA	1501	.	NC_000913	4325644	0	C	T	consensus_score=189.9	frequency=1	major_base=T	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	1502	.	NC_000913	4328622	0	T	C	bias_e_value=4139260	bias_p_value=0.891765	consensus_score=177.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.572424	major_base=C	major_cov=28/34	major_frequency=9.118e-01	minor_base=T	minor_cov=3/3	new_cov=28/34	polymorphism_frequency=9.118e-01	polymorphism_score=7.3	prediction=consensus	ref_cov=3/3	total_cov=31/37
RA	1503	.	NC_000913	4331890	0	C	T	bias_e_value=4304400	bias_p_value=0.927343	consensus_score=119.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.643879	major_base=T	major_cov=9/31	major_frequency=9.756e-01	minor_base=C	minor_cov=0/1	new_cov=9/31	polymorphism_frequency=9.756e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=9/32
RA	1504	.	NC_000913	4340953	0	C	T	bias_e_value=311038	bias_p_value=0.0670101	consensus_score=114.5	fisher_strand_p_value=0.607752	frequency=1	ks_quality_p_value=0.0204681	major_base=T	major_cov=20/22	major_frequency=9.333e-01	minor_base=C	minor_cov=2/1	new_cov=20/22	polymorphism_frequency=9.333e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=2/1	total_cov=22/23
RA	1505	.	NC_000913	4344501	0	G	A	consensus_score=143.7	frequency=1	major_base=A	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	1506	.	NC_000913	4344935	0	G	A	bias_e_value=3935580	bias_p_value=0.847884	consensus_score=178.1	fisher_strand_p_value=0.622422	frequency=1	ks_quality_p_value=0.806358	major_base=A	major_cov=32/27	major_frequency=9.365e-01	minor_base=G	minor_cov=3/1	new_cov=32/27	polymorphism_frequency=9.365e-01	polymorphism_score=2.1	prediction=consensus	ref_cov=3/1	total_cov=35/28
RA	1507	.	NC_000913	4390331	0	C	T	bias_e_value=3193320	bias_p_value=0.687971	consensus_score=110.5	fisher_strand_p_value=0.60692	frequency=1	ks_quality_p_value=0.532119	major_base=T	major_cov=20/19	major_frequency=9.070e-01	minor_base=C	minor_cov=1/3	new_cov=20/19	polymorphism_frequency=9.070e-01	polymorphism_score=2.0	prediction=consensus	ref_cov=1/3	total_cov=21/22
RA	1508	.	NC_000913	4402938	0	G	A	bias_e_value=3882880	bias_p_value=0.836531	consensus_score=189.3	fisher_strand_p_value=0.492063	frequency=1	ks_quality_p_value=0.987281	major_base=A	major_cov=30/32	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=30/32	polymorphism_frequency=9.841e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=1/0	total_cov=31/32
RA	1509	.	NC_000913	4410859	0	C	T	consensus_score=142.9	frequency=1	major_base=T	major_cov=26/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	1510	.	NC_000913	4414192	0	G	A	bias_e_value=4428620	bias_p_value=0.954105	consensus_score=160.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.71275	major_base=A	major_cov=29/25	major_frequency=9.643e-01	minor_base=G	minor_cov=1/1	new_cov=29/25	polymorphism_frequency=9.643e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=31/26
RA	1511	.	NC_000913	4430584	0	C	T	bias_e_value=4186970	bias_p_value=0.902042	consensus_score=233.3	fisher_strand_p_value=0.601188	frequency=1	ks_quality_p_value=0.983724	major_base=T	major_cov=35/40	major_frequency=9.615e-01	minor_base=C	minor_cov=2/1	new_cov=35/40	polymorphism_frequency=9.615e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/1	total_cov=37/41
RA	1512	.	NC_000913	4431220	0	C	T	bias_e_value=3947800	bias_p_value=0.850517	consensus_score=131.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.505737	major_base=T	major_cov=19/27	major_frequency=9.200e-01	minor_base=C	minor_cov=2/2	new_cov=19/27	polymorphism_frequency=9.200e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=2/2	total_cov=21/30
RA	1513	.	NC_000913	4437890	0	C	T	consensus_score=56.2	frequency=1	major_base=T	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	1514	.	NC_000913	4439578	0	G	A	consensus_score=61.1	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1515	.	NC_000913	4440768	0	G	A	consensus_score=163.0	frequency=1	major_base=A	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	1516	.	NC_000913	4445315	0	C	T	bias_e_value=3906610	bias_p_value=0.841642	consensus_score=224.8	fisher_strand_p_value=0.492958	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/34	major_frequency=9.722e-01	minor_base=C	minor_cov=0/2	new_cov=36/34	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=37/37
RA	1517	.	NC_000913	4445924	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=198.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999504	major_base=T	major_cov=27/36	major_frequency=9.844e-01	minor_base=G	minor_cov=0/1	new_cov=27/36	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	1518	.	NC_000913	4446482	0	C	T	bias_e_value=4308920	bias_p_value=0.928316	consensus_score=125.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.646098	major_base=T	major_cov=23/20	major_frequency=9.348e-01	minor_base=C	minor_cov=2/1	new_cov=23/20	polymorphism_frequency=9.348e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=25/22
RA	1519	.	NC_000913	4448304	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=99.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/20	major_frequency=9.714e-01	minor_base=C	minor_cov=0/1	new_cov=14/20	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=14/21
RA	1520	.	NC_000913	4463952	0	G	A	bias_e_value=3578760	bias_p_value=0.77101	consensus_score=166.1	fisher_strand_p_value=0.588053	frequency=1	ks_quality_p_value=0.688608	major_base=A	major_cov=25/31	major_frequency=9.492e-01	minor_base=G	minor_cov=2/1	new_cov=25/31	polymorphism_frequency=9.492e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/1	total_cov=27/32
RA	1521	.	NC_000913	4473900	0	C	T	consensus_score=211.4	frequency=1	major_base=T	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	1522	.	NC_000913	4475493	0	T	C	bias_e_value=4322570	bias_p_value=0.931256	consensus_score=53.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.65291	major_base=C	major_cov=10/9	major_frequency=9.500e-01	minor_base=T	minor_cov=0/1	new_cov=10/9	polymorphism_frequency=9.500e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=10/10
RA	1523	.	NC_000913	4476605	0	G	A	bias_e_value=4244120	bias_p_value=0.914356	consensus_score=62.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.61579	major_base=A	major_cov=10/12	major_frequency=9.167e-01	minor_base=G	minor_cov=1/1	new_cov=10/12	polymorphism_frequency=9.167e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=11/13
RA	1524	.	NC_000913	4489016	0	C	T	consensus_score=147.6	frequency=1	major_base=T	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	1525	.	NC_000913	4492470	0	C	A	bias_e_value=2920500	bias_p_value=0.629195	consensus_score=102.9	fisher_strand_p_value=0.278846	frequency=1	ks_quality_p_value=0.983915	major_base=A	major_cov=15/22	major_frequency=9.250e-01	minor_base=C	minor_cov=0/3	new_cov=15/22	polymorphism_frequency=9.250e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=0/3	total_cov=15/26
RA	1526	.	NC_000913	4492583	1	.	G	bias_e_value=4574490	bias_p_value=0.98553	consensus_score=102.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.834778	major_base=G	major_cov=16/17	major_frequency=8.919e-01	minor_base=.	minor_cov=2/2	new_cov=16/17	polymorphism_frequency=8.919e-01	polymorphism_score=7.6	prediction=consensus	ref_cov=2/2	total_cov=18/19
RA	1527	.	NC_000913	4495194	0	A	T	consensus_score=149.6	frequency=1	major_base=T	major_cov=29/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/17
RA	1528	.	NC_000913	4496168	0	G	T	bias_e_value=4589910	bias_p_value=0.988852	consensus_score=167.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.854448	major_base=T	major_cov=30/27	major_frequency=9.661e-01	minor_base=G	minor_cov=1/1	new_cov=30/27	polymorphism_frequency=9.661e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/1	total_cov=31/30
RA	1529	.	NC_000913	4496885	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=101.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=A	major_cov=16/15	major_frequency=9.688e-01	minor_base=G	minor_cov=1/0	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=17/15
RA	1530	.	NC_000913	4507424	0	G	C	consensus_score=141.2	frequency=1	major_base=C	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	1531	.	NC_000913	4509416	0	T	C	bias_e_value=3035850	bias_p_value=0.654045	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.0	fisher_strand_p_value=0.549077	frequency=4.078e-01	ks_quality_p_value=0.535648	major_base=T	major_cov=32/29	major_frequency=5.922e-01	minor_base=C	minor_cov=19/23	new_cov=19/23	polymorphism_frequency=4.078e-01	polymorphism_score=110.3	prediction=polymorphism	ref_cov=32/29	total_cov=52/52
RA	1532	.	NC_000913	4509428	0	A	G	bias_e_value=2537280	bias_p_value=0.546633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.1	fisher_strand_p_value=0.434214	frequency=4.151e-01	ks_quality_p_value=0.496877	major_base=A	major_cov=32/30	major_frequency=5.849e-01	minor_base=G	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=4.151e-01	polymorphism_score=116.5	prediction=polymorphism	ref_cov=32/30	total_cov=51/56
RA	1533	.	NC_000913	4509463	0	T	G	bias_e_value=268461	bias_p_value=0.0578374	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.8	fisher_strand_p_value=0.331677	frequency=4.206e-01	ks_quality_p_value=0.0313238	major_base=T	major_cov=31/31	major_frequency=5.794e-01	minor_base=G	minor_cov=18/27	new_cov=18/27	polymorphism_frequency=4.206e-01	polymorphism_score=120.3	prediction=polymorphism	ref_cov=31/31	total_cov=51/58
RA	1534	.	NC_000913	4509478	1	.	C	bias_e_value=3686140	bias_p_value=0.794144	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.9	fisher_strand_p_value=0.437755	frequency=4.340e-01	ks_quality_p_value=0.985639	major_base=.	major_cov=31/29	major_frequency=5.660e-01	minor_base=C	minor_cov=20/26	new_cov=20/26	polymorphism_frequency=4.340e-01	polymorphism_score=217.8	prediction=polymorphism	ref_cov=31/29	total_cov=51/55
RA	1535	.	NC_000913	4509487	0	A	G	bias_e_value=3744000	bias_p_value=0.806609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.4	fisher_strand_p_value=0.44661	frequency=4.595e-01	ks_quality_p_value=1	major_base=A	major_cov=31/29	major_frequency=5.405e-01	minor_base=G	minor_cov=22/29	new_cov=22/29	polymorphism_frequency=4.595e-01	polymorphism_score=126.0	prediction=polymorphism	ref_cov=31/29	total_cov=54/58
RA	1536	.	NC_000913	4509524	0	C	T	bias_e_value=4406310	bias_p_value=0.949298	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.6	fisher_strand_p_value=0.698953	frequency=4.771e-01	ks_quality_p_value=1	major_base=C	major_cov=26/31	major_frequency=5.229e-01	minor_base=T	minor_cov=21/31	new_cov=21/31	polymorphism_frequency=4.771e-01	polymorphism_score=132.3	prediction=polymorphism	ref_cov=26/31	total_cov=47/63
RA	1537	.	NC_000913	4509537	0	G	A	bias_e_value=3183150	bias_p_value=0.685779	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.2	fisher_strand_p_value=0.321019	frequency=4.902e-01	ks_quality_p_value=1	major_base=G	major_cov=24/28	major_frequency=5.098e-01	minor_base=A	minor_cov=18/32	new_cov=18/32	polymorphism_frequency=4.902e-01	polymorphism_score=125.2	prediction=polymorphism	ref_cov=24/28	total_cov=45/61
RA	1538	.	NC_000913	4509544	0	G	A	bias_e_value=3638390	bias_p_value=0.783858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.6	fisher_strand_p_value=0.433938	frequency=4.673e-01	ks_quality_p_value=0.966572	major_base=G	major_cov=27/30	major_frequency=5.327e-01	minor_base=A	minor_cov=19/31	new_cov=19/31	polymorphism_frequency=4.673e-01	polymorphism_score=127.3	prediction=polymorphism	ref_cov=27/30	total_cov=47/61
RA	1539	.	NC_000913	4509556	0	T	C	bias_e_value=1839490	bias_p_value=0.396301	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.9	fisher_strand_p_value=0.324306	frequency=5.446e-01	ks_quality_p_value=0.402477	major_base=C	major_cov=22/33	major_frequency=5.446e-01	minor_base=T	minor_cov=23/23	new_cov=22/33	polymorphism_frequency=5.446e-01	polymorphism_score=113.4	prediction=polymorphism	ref_cov=23/23	total_cov=47/58
RA	1540	.	NC_000913	4509562	0	T	C	bias_e_value=992867	bias_p_value=0.213904	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.9	fisher_strand_p_value=0.690595	frequency=5.392e-01	ks_quality_p_value=0.0793325	major_base=C	major_cov=23/32	major_frequency=5.392e-01	minor_base=T	minor_cov=22/25	new_cov=23/32	polymorphism_frequency=5.392e-01	polymorphism_score=120.7	prediction=polymorphism	ref_cov=22/25	total_cov=49/57
RA	1541	.	NC_000913	4509586	0	A	C	bias_e_value=3119280	bias_p_value=0.672019	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.7	fisher_strand_p_value=0.312648	frequency=4.742e-01	ks_quality_p_value=0.988674	major_base=A	major_cov=21/30	major_frequency=5.258e-01	minor_base=C	minor_cov=24/22	new_cov=24/22	polymorphism_frequency=4.742e-01	polymorphism_score=116.0	prediction=polymorphism	ref_cov=21/30	total_cov=45/52
RA	1542	.	NC_000913	4509592	0	G	A	bias_e_value=898023	bias_p_value=0.19347	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.2	fisher_strand_p_value=0.224897	frequency=5.052e-01	ks_quality_p_value=0.213015	major_base=A	major_cov=20/29	major_frequency=5.052e-01	minor_base=G	minor_cov=26/22	new_cov=20/29	polymorphism_frequency=5.052e-01	polymorphism_score=122.0	prediction=polymorphism	ref_cov=26/22	total_cov=46/51
RA	1543	.	NC_000913	4509623	0	G	A	bias_e_value=305827	bias_p_value=0.0658876	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.1	fisher_strand_p_value=0.2866	frequency=5.287e-01	ks_quality_p_value=0.042513	major_base=A	major_cov=18/28	major_frequency=5.287e-01	minor_base=G	minor_cov=21/20	new_cov=18/28	polymorphism_frequency=5.287e-01	polymorphism_score=107.8	prediction=polymorphism	ref_cov=21/20	total_cov=39/48
RA	1544	.	NC_000913	4509628	0	A	G	bias_e_value=311285	bias_p_value=0.0670634	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.6	fisher_strand_p_value=0.18697	frequency=4.940e-01	ks_quality_p_value=0.0665971	major_base=A	major_cov=22/20	major_frequency=5.060e-01	minor_base=G	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=4.940e-01	polymorphism_score=109.7	prediction=polymorphism	ref_cov=22/20	total_cov=38/46
RA	1545	.	NC_000913	4509630	0	C	T	bias_e_value=598440	bias_p_value=0.128928	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.6	fisher_strand_p_value=0.0780217	frequency=4.634e-01	ks_quality_p_value=0.361791	major_base=C	major_cov=24/20	major_frequency=5.366e-01	minor_base=T	minor_cov=13/25	new_cov=13/25	polymorphism_frequency=4.634e-01	polymorphism_score=95.2	prediction=polymorphism	ref_cov=24/20	total_cov=39/46
RA	1546	.	NC_000913	4509632	0	A	G	bias_e_value=1724160	bias_p_value=0.371454	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.0	fisher_strand_p_value=0.517105	frequency=5.176e-01	ks_quality_p_value=0.229353	major_base=G	major_cov=18/26	major_frequency=5.176e-01	minor_base=A	minor_cov=20/21	new_cov=18/26	polymorphism_frequency=5.176e-01	polymorphism_score=107.1	prediction=polymorphism	ref_cov=20/21	total_cov=39/47
RA	1547	.	NC_000913	4509633	0	C	T	bias_e_value=2250790	bias_p_value=0.484912	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.5	fisher_strand_p_value=0.270708	frequency=4.699e-01	ks_quality_p_value=0.65687	major_base=C	major_cov=23/21	major_frequency=5.301e-01	minor_base=T	minor_cov=15/24	new_cov=15/24	polymorphism_frequency=4.699e-01	polymorphism_score=93.1	prediction=polymorphism	ref_cov=23/21	total_cov=39/47
RA	1548	.	NC_000913	4509637	0	C	T	bias_e_value=242546	bias_p_value=0.0522543	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.0	fisher_strand_p_value=0.126211	frequency=4.588e-01	ks_quality_p_value=0.0727579	major_base=C	major_cov=25/21	major_frequency=5.412e-01	minor_base=T	minor_cov=14/25	new_cov=14/25	polymorphism_frequency=4.588e-01	polymorphism_score=103.2	prediction=polymorphism	ref_cov=25/21	total_cov=40/47
RA	1549	.	NC_000913	4509640	0	T	C	bias_e_value=2401500	bias_p_value=0.51738	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.0	fisher_strand_p_value=0.19785	frequency=4.651e-01	ks_quality_p_value=0.99677	major_base=T	major_cov=24/22	major_frequency=5.349e-01	minor_base=C	minor_cov=15/25	new_cov=15/25	polymorphism_frequency=4.651e-01	polymorphism_score=100.8	prediction=polymorphism	ref_cov=24/22	total_cov=40/47
RA	1550	.	NC_000913	4509655	0	T	G	bias_e_value=2622950	bias_p_value=0.56509	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.0	fisher_strand_p_value=0.279706	frequency=4.483e-01	ks_quality_p_value=0.815173	major_base=T	major_cov=25/23	major_frequency=5.517e-01	minor_base=G	minor_cov=15/24	new_cov=15/24	polymorphism_frequency=4.483e-01	polymorphism_score=100.0	prediction=polymorphism	ref_cov=25/23	total_cov=40/47
RA	1551	.	NC_000913	4509667	0	A	C	bias_e_value=1760990	bias_p_value=0.379389	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.1	fisher_strand_p_value=0.379731	frequency=4.699e-01	ks_quality_p_value=0.322199	major_base=A	major_cov=23/21	major_frequency=5.301e-01	minor_base=C	minor_cov=16/23	new_cov=16/23	polymorphism_frequency=4.699e-01	polymorphism_score=123.8	prediction=polymorphism	ref_cov=23/21	total_cov=39/44
RA	1552	.	NC_000913	4509721	0	T	C	bias_e_value=3540950	bias_p_value=0.762864	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.9	fisher_strand_p_value=0.444361	frequency=3.286e-01	ks_quality_p_value=0.891249	major_base=T	major_cov=28/19	major_frequency=6.714e-01	minor_base=C	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=3.286e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=28/19	total_cov=39/31
RA	1553	.	NC_000913	4509733	0	A	C	bias_e_value=3829380	bias_p_value=0.825004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.7	fisher_strand_p_value=0.6094	frequency=3.485e-01	ks_quality_p_value=0.771563	major_base=A	major_cov=24/19	major_frequency=6.515e-01	minor_base=C	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=3.485e-01	polymorphism_score=60.0	prediction=polymorphism	ref_cov=24/19	total_cov=36/31
RA	1554	.	NC_000913	4509745	0	A	G	bias_e_value=3952260	bias_p_value=0.851477	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.7	fisher_strand_p_value=0.565876	frequency=2.581e-01	ks_quality_p_value=0.896217	major_base=A	major_cov=25/21	major_frequency=7.419e-01	minor_base=G	minor_cov=7/9	new_cov=7/9	polymorphism_frequency=2.581e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=25/21	total_cov=32/31
RA	1555	.	NC_000913	4509751	0	C	T	bias_e_value=4056490	bias_p_value=0.873933	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.8	fisher_strand_p_value=0.760417	frequency=2.258e-01	ks_quality_p_value=0.712689	major_base=C	major_cov=28/20	major_frequency=7.742e-01	minor_base=T	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=2.258e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=28/20	total_cov=35/27
RA	1556	.	NC_000913	4510238	0	T	G	bias_e_value=758227	bias_p_value=0.163353	consensus_score=115.5	fisher_strand_p_value=0.644054	frequency=1	ks_quality_p_value=0.0595178	major_base=G	major_cov=18/24	major_frequency=8.936e-01	minor_base=T	minor_cov=3/2	new_cov=18/24	polymorphism_frequency=8.936e-01	polymorphism_score=6.0	prediction=consensus	ref_cov=3/2	total_cov=21/27
RA	1557	.	NC_000913	4512293	0	T	C	bias_e_value=2371230	bias_p_value=0.510859	consensus_score=229.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.19322	major_base=C	major_cov=46/31	major_frequency=9.747e-01	minor_base=T	minor_cov=1/1	new_cov=46/31	polymorphism_frequency=9.747e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/1	total_cov=48/32
RA	1558	.	NC_000913	4512501	0	C	T	bias_e_value=758273	bias_p_value=0.163363	consensus_score=277.6	fisher_strand_p_value=0.0383357	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/38	major_frequency=9.570e-01	minor_base=G	minor_cov=0/4	new_cov=51/38	polymorphism_frequency=9.570e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	1559	.	NC_000913	4512642	0	T	C	bias_e_value=3827940	bias_p_value=0.824694	consensus_score=308.3	fisher_strand_p_value=0.484536	frequency=1	ks_quality_p_value=0.969546	major_base=C	major_cov=46/50	major_frequency=9.897e-01	minor_base=T	minor_cov=1/0	new_cov=46/50	polymorphism_frequency=9.897e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=1/0	total_cov=47/50
RA	1560	.	NC_000913	4513044	0	T	C	consensus_score=247.2	frequency=1	major_base=C	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	1561	.	NC_000913	4513841	0	A	G	bias_e_value=4639210	bias_p_value=0.999475	consensus_score=199.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967761	major_base=G	major_cov=32/30	major_frequency=9.841e-01	minor_base=A	minor_cov=1/0	new_cov=32/30	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/31
RA	1562	.	NC_000913	4514139	0	A	C	bias_e_value=4641280	bias_p_value=0.999919	consensus_score=196.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98733	major_base=C	major_cov=28/33	major_frequency=9.683e-01	minor_base=A	minor_cov=1/1	new_cov=28/33	polymorphism_frequency=9.683e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/1	total_cov=29/34
RA	1563	.	NC_000913	4514287	0	G	C	consensus_score=177.1	frequency=1	major_base=C	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	1564	.	NC_000913	4514983	0	A	C	bias_e_value=2888510	bias_p_value=0.622302	consensus_score=288.4	fisher_strand_p_value=0.35497	frequency=1	ks_quality_p_value=0.758012	major_base=C	major_cov=40/44	major_frequency=9.545e-01	minor_base=A	minor_cov=3/1	new_cov=40/44	polymorphism_frequency=9.545e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=3/1	total_cov=43/45
RA	1565	.	NC_000913	4515348	0	A	C	bias_e_value=3859430	bias_p_value=0.831477	consensus_score=228.3	fisher_strand_p_value=0.478873	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=33/37	major_frequency=9.859e-01	minor_base=A	minor_cov=1/0	new_cov=33/37	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/37
RA	1566	.	NC_000913	4516110	0	C	T	bias_e_value=3862600	bias_p_value=0.83216	consensus_score=289.0	fisher_strand_p_value=0.479802	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/50	major_frequency=9.223e-01	minor_base=G	minor_cov=5/3	new_cov=45/50	polymorphism_frequency=9.223e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/2	total_cov=52/55
RA	1567	.	NC_000913	4516378	0	G	A	bias_e_value=3689900	bias_p_value=0.794953	consensus_score=224.8	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/42	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=31/42	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	1568	.	NC_000913	4516632	0	T	C	bias_e_value=4641150	bias_p_value=0.999892	consensus_score=263.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985354	major_base=C	major_cov=34/47	major_frequency=9.878e-01	minor_base=T	minor_cov=0/1	new_cov=34/47	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/48
RA	1569	.	NC_000913	4516959	0	C	T	bias_e_value=2084210	bias_p_value=0.449024	consensus_score=173.5	fisher_strand_p_value=0.157723	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/37	major_frequency=9.254e-01	minor_base=C	minor_cov=4/1	new_cov=25/37	polymorphism_frequency=9.254e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=4/1	total_cov=31/38
RA	1570	.	NC_000913	4517127	0	C	A	consensus_score=173.8	frequency=1	major_base=A	major_cov=21/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/33
RA	1571	.	NC_000913	4518627	0	C	A	bias_e_value=4598280	bias_p_value=0.990656	consensus_score=185.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.866448	major_base=A	major_cov=42/21	major_frequency=9.844e-01	minor_base=C	minor_cov=1/0	new_cov=42/21	polymorphism_frequency=9.844e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=43/21
RA	1572	.	NC_000913	4518681	0	A	C	consensus_score=241.3	frequency=1	major_base=C	major_cov=52/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/24
RA	1573	.	NC_000913	4518793	0	C	T	bias_e_value=2782360	bias_p_value=0.599433	consensus_score=213.6	fisher_strand_p_value=0.256849	frequency=1	ks_quality_p_value=0.981389	major_base=T	major_cov=39/31	major_frequency=9.589e-01	minor_base=C	minor_cov=3/0	new_cov=39/31	polymorphism_frequency=9.589e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=3/0	total_cov=42/31
RA	1574	.	NC_000913	4530252	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=157.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/22	major_frequency=9.444e-01	minor_base=C	minor_cov=2/1	new_cov=29/22	polymorphism_frequency=9.444e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=2/1	total_cov=31/23
RA	1575	.	NC_000913	4532063	0	C	T	bias_e_value=4404020	bias_p_value=0.948804	consensus_score=147.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.697576	major_base=T	major_cov=27/22	major_frequency=9.608e-01	minor_base=C	minor_cov=1/1	new_cov=27/22	polymorphism_frequency=9.608e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=28/25
RA	1576	.	NC_000913	4535073	0	A	G	consensus_score=89.0	frequency=1	major_base=G	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	1577	.	NC_000913	4535189	0	C	T	bias_e_value=1881550	bias_p_value=0.405362	consensus_score=117.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.135013	major_base=T	major_cov=21/19	major_frequency=9.524e-01	minor_base=C	minor_cov=1/1	new_cov=21/19	polymorphism_frequency=9.524e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=22/20
RA	1578	.	NC_000913	4540111	0	A	G	bias_e_value=4638660	bias_p_value=0.999355	consensus_score=54.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96429	major_base=G	major_cov=11/9	major_frequency=9.091e-01	minor_base=A	minor_cov=1/1	new_cov=11/9	polymorphism_frequency=9.091e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=1/1	total_cov=12/10
RA	1579	.	NC_000913	4540114	0	A	T	bias_e_value=4441200	bias_p_value=0.956814	consensus_score=59.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.720887	major_base=T	major_cov=11/9	major_frequency=9.091e-01	minor_base=A	minor_cov=1/1	new_cov=11/9	polymorphism_frequency=9.091e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=1/1	total_cov=12/10
RA	1580	.	NC_000913	4540431	0	T	C	consensus_score=78.4	frequency=1	major_base=C	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1581	.	NC_000913	4542683	0	T	.	bias_e_value=4640400	bias_p_value=0.999731	consensus_score=72.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=.	major_cov=11/7	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=11/7	polymorphism_frequency=9.474e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/0	total_cov=13/7
RA	1582	.	NC_000913	4542692	1	.	A	bias_e_value=4641650	bias_p_value=1	consensus_score=61.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/6	major_frequency=8.636e-01	minor_base=.	minor_cov=2/1	new_cov=13/6	polymorphism_frequency=8.636e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=2/1	total_cov=15/7
RA	1583	.	NC_000913	4543047	0	T	G	consensus_score=86.0	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	1584	.	NC_000913	4544464	0	A	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=134.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997838	major_base=T	major_cov=18/24	major_frequency=9.545e-01	minor_base=A	minor_cov=1/1	new_cov=18/24	polymorphism_frequency=9.545e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/1	total_cov=20/25
RA	1585	.	NC_000913	4546272	0	A	C	bias_e_value=3903390	bias_p_value=0.840949	consensus_score=100.9	fisher_strand_p_value=0.491979	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=17/15	major_frequency=9.412e-01	minor_base=A	minor_cov=2/0	new_cov=17/15	polymorphism_frequency=9.412e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=19/15
RA	1586	.	NC_000913	4549223	0	T	G	bias_e_value=3945310	bias_p_value=0.84998	consensus_score=114.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.50495	major_base=G	major_cov=19/22	major_frequency=9.318e-01	minor_base=T	minor_cov=1/2	new_cov=19/22	polymorphism_frequency=9.318e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=1/2	total_cov=20/24
RA	1587	.	NC_000913	4553609	0	T	A	bias_e_value=2544770	bias_p_value=0.548246	consensus_score=235.3	fisher_strand_p_value=0.493333	frequency=1	ks_quality_p_value=0.439468	major_base=A	major_cov=36/38	major_frequency=9.737e-01	minor_base=T	minor_cov=2/0	new_cov=36/38	polymorphism_frequency=9.737e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=2/0	total_cov=39/38
RA	1588	.	NC_000913	4556917	0	A	G	bias_e_value=4592940	bias_p_value=0.989505	consensus_score=130.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.858661	major_base=G	major_cov=23/17	major_frequency=9.524e-01	minor_base=A	minor_cov=1/1	new_cov=23/17	polymorphism_frequency=9.524e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=24/18
RA	1589	.	NC_000913	4560309	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=145.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/25	major_frequency=9.574e-01	minor_base=C	minor_cov=1/1	new_cov=20/25	polymorphism_frequency=9.574e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/26
RA	1590	.	NC_000913	4563567	0	T	C	consensus_score=158.6	frequency=1	major_base=C	major_cov=29/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/21
RA	1591	.	NC_000913	4564141	0	T	G	bias_e_value=4012310	bias_p_value=0.864413	consensus_score=238.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.526752	major_base=G	major_cov=45/30	major_frequency=9.615e-01	minor_base=T	minor_cov=2/1	new_cov=45/30	polymorphism_frequency=9.615e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=2/1	total_cov=47/31
RA	1592	.	NC_000913	4567272	0	C	A	bias_e_value=3034690	bias_p_value=0.653796	consensus_score=111.5	fisher_strand_p_value=0.3	frequency=1	ks_quality_p_value=0.979696	major_base=A	major_cov=28/11	major_frequency=9.750e-01	minor_base=C	minor_cov=0/1	new_cov=28/11	polymorphism_frequency=9.750e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/1	total_cov=28/12
RA	1593	.	NC_000913	4569307	0	T	C	bias_e_value=2027280	bias_p_value=0.436759	consensus_score=54.8	fisher_strand_p_value=0.32	frequency=1	ks_quality_p_value=0.472367	major_base=C	major_cov=17/7	major_frequency=9.600e-01	minor_base=T	minor_cov=0/1	new_cov=17/7	polymorphism_frequency=9.600e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=17/8
RA	1594	.	NC_000913	4591674	0	A	G	bias_e_value=2888440	bias_p_value=0.622288	consensus_score=25.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.26906	major_base=G	major_cov=4/9	major_frequency=8.667e-01	minor_base=A	minor_cov=1/1	new_cov=4/9	polymorphism_frequency=8.667e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=5/10
RA	1595	.	NC_000913	4591677	0	T	C	bias_e_value=4571650	bias_p_value=0.984918	consensus_score=28.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.831424	major_base=C	major_cov=4/9	major_frequency=8.667e-01	minor_base=T	minor_cov=1/1	new_cov=4/9	polymorphism_frequency=8.667e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/1	total_cov=5/10
RA	1596	.	NC_000913	4591930	0	G	C	bias_e_value=3432690	bias_p_value=0.739541	consensus_score=127.4	fisher_strand_p_value=0.372093	frequency=1	ks_quality_p_value=0.998893	major_base=C	major_cov=27/15	major_frequency=9.767e-01	minor_base=A	minor_cov=0/1	new_cov=27/15	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1597	.	NC_000913	4591974	0	G	A	consensus_score=113.5	frequency=1	major_base=A	major_cov=27/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/14
RA	1598	.	NC_000913	4592082	0	G	A	consensus_score=128.0	frequency=1	major_base=A	major_cov=24/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/17
RA	1599	.	NC_000913	4592188	0	C	T	bias_e_value=4639910	bias_p_value=0.999624	consensus_score=129.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.972694	major_base=T	major_cov=19/23	major_frequency=9.767e-01	minor_base=G	minor_cov=0/1	new_cov=19/23	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	1600	.	NC_000913	4595570	0	A	.	consensus_score=220.8	frequency=1	major_base=.	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	1601	.	NC_000913	4602089	0	C	T	bias_e_value=3860380	bias_p_value=0.831682	consensus_score=168.4	fisher_strand_p_value=0.490909	frequency=1	ks_quality_p_value=0.976049	major_base=T	major_cov=28/26	major_frequency=9.818e-01	minor_base=G	minor_cov=0/1	new_cov=28/26	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	1602	.	NC_000913	4605702	0	A	C	bias_e_value=4177260	bias_p_value=0.899951	consensus_score=94.9	fisher_strand_p_value=0.635027	frequency=1	ks_quality_p_value=0.925075	major_base=C	major_cov=18/13	major_frequency=8.857e-01	minor_base=A	minor_cov=3/1	new_cov=18/13	polymorphism_frequency=8.857e-01	polymorphism_score=3.0	prediction=consensus	ref_cov=3/1	total_cov=21/14
RA	1603	.	NC_000913	4605791	0	A	G	bias_e_value=4626860	bias_p_value=0.996812	consensus_score=129.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.921225	major_base=G	major_cov=19/20	major_frequency=9.750e-01	minor_base=A	minor_cov=0/1	new_cov=19/20	polymorphism_frequency=9.750e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=19/21
RA	1604	.	NC_000913	4614170	0	C	T	consensus_score=197.5	frequency=1	major_base=T	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	1605	.	NC_000913	4616022	0	T	C	bias_e_value=4209090	bias_p_value=0.906808	consensus_score=161.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.600613	major_base=C	major_cov=23/28	major_frequency=9.808e-01	minor_base=T	minor_cov=0/1	new_cov=23/28	polymorphism_frequency=9.808e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=23/29
RA	1606	.	NC_000913	4616073	0	T	C	bias_e_value=3274500	bias_p_value=0.705459	consensus_score=132.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.338764	major_base=C	major_cov=19/24	major_frequency=9.773e-01	minor_base=T	minor_cov=0/1	new_cov=19/24	polymorphism_frequency=9.773e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=19/25
RA	1607	.	NC_000913	4616514	0	T	G	bias_e_value=2720660	bias_p_value=0.58614	consensus_score=161.0	fisher_strand_p_value=0.46	frequency=1	ks_quality_p_value=0.527292	major_base=G	major_cov=22/27	major_frequency=9.800e-01	minor_base=T	minor_cov=1/0	new_cov=22/27	polymorphism_frequency=9.800e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=23/27
RA	1608	.	NC_000913	4616535	0	A	G	bias_e_value=3290640	bias_p_value=0.708938	consensus_score=143.5	fisher_strand_p_value=0.446809	frequency=1	ks_quality_p_value=0.765409	major_base=G	major_cov=20/26	major_frequency=9.787e-01	minor_base=A	minor_cov=1/0	new_cov=20/26	polymorphism_frequency=9.787e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=21/26
RA	1609	.	NC_000913	4616648	0	C	T	bias_e_value=3316280	bias_p_value=0.714462	consensus_score=192.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.347176	major_base=T	major_cov=30/30	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=30/30	polymorphism_frequency=9.836e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=30/32
RA	1610	.	NC_000913	4616682	0	C	T	bias_e_value=2780860	bias_p_value=0.599109	consensus_score=233.6	fisher_strand_p_value=0.486111	frequency=1	ks_quality_p_value=0.518058	major_base=T	major_cov=37/34	major_frequency=9.861e-01	minor_base=C	minor_cov=0/1	new_cov=37/34	polymorphism_frequency=9.861e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=37/35
RA	1611	.	NC_000913	4617053	0	G	C	bias_e_value=3847010	bias_p_value=0.828802	consensus_score=142.2	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=0.995781	major_base=C	major_cov=20/23	major_frequency=9.773e-01	minor_base=G	minor_cov=1/0	new_cov=20/23	polymorphism_frequency=9.773e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=21/23
RA	1612	.	NC_000913	4617138	0	C	A	bias_e_value=3961990	bias_p_value=0.853574	consensus_score=110.0	fisher_strand_p_value=0.564676	frequency=1	ks_quality_p_value=0.903615	major_base=A	major_cov=15/22	major_frequency=9.250e-01	minor_base=C	minor_cov=2/1	new_cov=15/22	polymorphism_frequency=9.250e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/1	total_cov=17/23
RA	1613	.	NC_000913	4617238	0	G	A	bias_e_value=2862200	bias_p_value=0.616634	consensus_score=104.5	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.545135	major_base=A	major_cov=18/16	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=18/16	polymorphism_frequency=9.714e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=18/17
RA	1614	.	NC_000913	4617409	0	G	A	consensus_score=105.3	frequency=1	major_base=A	major_cov=29/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/7
RA	1615	.	NC_000913	4617412	0	C	T	bias_e_value=2378210	bias_p_value=0.512363	consensus_score=100.6	fisher_strand_p_value=0.194444	frequency=1	ks_quality_p_value=0.998414	major_base=T	major_cov=29/6	major_frequency=9.722e-01	minor_base=.	minor_cov=0/1	new_cov=29/6	polymorphism_frequency=9.722e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=29/7
RA	1616	.	NC_000913	4617415	0	C	T	bias_e_value=2380560	bias_p_value=0.512868	consensus_score=102.4	fisher_strand_p_value=0.194444	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/6	major_frequency=9.722e-01	minor_base=C	minor_cov=0/1	new_cov=29/6	polymorphism_frequency=9.722e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/1	total_cov=29/7
RA	1617	.	NC_000913	4617436	0	T	C	consensus_score=105.8	frequency=1	major_base=C	major_cov=31/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/8
RA	1618	.	NC_000913	4617499	0	T	A	bias_e_value=3951490	bias_p_value=0.851311	consensus_score=138.1	fisher_strand_p_value=0.507863	frequency=1	ks_quality_p_value=0.998111	major_base=A	major_cov=26/19	major_frequency=9.574e-01	minor_base=C	minor_cov=2/0	new_cov=26/19	polymorphism_frequency=9.574e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	1619	.	NC_000913	4617532	0	C	T	bias_e_value=3778680	bias_p_value=0.814082	consensus_score=166.2	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.988006	major_base=T	major_cov=28/23	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=28/23	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	1620	.	NC_000913	4617565	0	C	T	consensus_score=161.4	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1621	.	NC_000913	4617574	0	C	A	consensus_score=160.2	frequency=1	major_base=A	major_cov=24/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	1622	.	NC_000913	4617616	0	T	C	consensus_score=169.6	frequency=1	major_base=C	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	1623	.	NC_000913	4617631	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_score=164.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=22/28	major_frequency=9.804e-01	minor_base=T	minor_cov=0/1	new_cov=22/28	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=22/29
RA	1624	.	NC_000913	4617928	0	G	A	bias_e_value=3719820	bias_p_value=0.8014	consensus_score=160.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.440206	major_base=A	major_cov=25/27	major_frequency=9.630e-01	minor_base=G	minor_cov=1/1	new_cov=25/27	polymorphism_frequency=9.630e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=28/28
RA	1625	.	NC_000913	4617976	0	T	C	bias_e_value=4407510	bias_p_value=0.949556	consensus_score=180.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.699673	major_base=C	major_cov=29/31	major_frequency=9.524e-01	minor_base=T	minor_cov=1/2	new_cov=29/31	polymorphism_frequency=9.524e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/2	total_cov=30/33
RA	1626	.	NC_000913	4618030	0	C	T	bias_e_value=4541590	bias_p_value=0.978443	consensus_score=155.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.799679	major_base=T	major_cov=22/32	major_frequency=9.643e-01	minor_base=C	minor_cov=1/1	new_cov=22/32	polymorphism_frequency=9.643e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=23/35
RA	1627	.	NC_000913	4618055	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=178.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/34	major_frequency=9.661e-01	minor_base=G	minor_cov=1/1	new_cov=23/34	polymorphism_frequency=9.661e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	1628	.	NC_000913	4618069	0	T	C	bias_e_value=2306440	bias_p_value=0.496901	consensus_score=163.8	fisher_strand_p_value=0.185859	frequency=1	ks_quality_p_value=0.994526	major_base=C	major_cov=22/31	major_frequency=9.636e-01	minor_base=T	minor_cov=2/0	new_cov=22/31	polymorphism_frequency=9.636e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=2/0	total_cov=25/31
RA	1629	.	NC_000913	4618075	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=168.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/29	major_frequency=9.273e-01	minor_base=G	minor_cov=2/2	new_cov=22/29	polymorphism_frequency=9.273e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=25/31
RA	1630	.	NC_000913	4618276	0	G	A	bias_e_value=4638790	bias_p_value=0.999383	consensus_score=163.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965066	major_base=A	major_cov=24/28	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=24/28	polymorphism_frequency=9.811e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=26/29
RA	1631	.	NC_000913	4618312	0	T	C	bias_e_value=4473320	bias_p_value=0.963735	consensus_score=167.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.743067	major_base=C	major_cov=26/28	major_frequency=9.818e-01	minor_base=T	minor_cov=0/1	new_cov=26/28	polymorphism_frequency=9.818e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=26/29
RA	1632	.	NC_000913	4618483	0	C	T	consensus_score=161.1	frequency=1	major_base=T	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	1633	.	NC_000913	4618489	0	C	T	bias_e_value=3865890	bias_p_value=0.832869	consensus_score=162.7	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/24	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=27/24	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	1634	.	NC_000913	4618702	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=147.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=27/23	major_frequency=9.804e-01	minor_base=G	minor_cov=1/0	new_cov=27/23	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	1635	.	NC_000913	4618717	0	T	G	bias_e_value=3606120	bias_p_value=0.776904	consensus_score=136.7	fisher_strand_p_value=0.42	frequency=1	ks_quality_p_value=0.979799	major_base=G	major_cov=29/20	major_frequency=9.800e-01	minor_base=T	minor_cov=0/1	new_cov=29/20	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/21
RA	1636	.	NC_000913	4618804	0	T	G	bias_e_value=2229850	bias_p_value=0.4804	consensus_score=221.9	fisher_strand_p_value=0.449275	frequency=1	ks_quality_p_value=0.390002	major_base=G	major_cov=38/30	major_frequency=9.855e-01	minor_base=T	minor_cov=0/1	new_cov=38/30	polymorphism_frequency=9.855e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=38/31
RA	1637	.	NC_000913	4619026	0	A	G	bias_e_value=3578290	bias_p_value=0.770908	consensus_score=184.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.404825	major_base=G	major_cov=29/31	major_frequency=9.677e-01	minor_base=A	minor_cov=1/1	new_cov=29/31	polymorphism_frequency=9.677e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=30/32
RA	1638	.	NC_000913	4619080	0	G	T	bias_e_value=4559550	bias_p_value=0.982311	consensus_score=186.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.817903	major_base=T	major_cov=30/27	major_frequency=9.661e-01	minor_base=G	minor_cov=1/1	new_cov=30/27	polymorphism_frequency=9.661e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=1/1	total_cov=31/28
RA	1639	.	NC_000913	4619131	0	G	A	bias_e_value=4458980	bias_p_value=0.960644	consensus_score=184.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.732895	major_base=A	major_cov=27/33	major_frequency=9.677e-01	minor_base=G	minor_cov=1/1	new_cov=27/33	polymorphism_frequency=9.677e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=29/34
RA	1640	.	NC_000913	4619134	0	G	A	bias_e_value=4518590	bias_p_value=0.973487	consensus_score=187.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.778747	major_base=A	major_cov=28/31	major_frequency=9.672e-01	minor_base=G	minor_cov=1/1	new_cov=28/31	polymorphism_frequency=9.672e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=29/34
RA	1641	.	NC_000913	4619197	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=174.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/26	major_frequency=9.643e-01	minor_base=C	minor_cov=1/1	new_cov=28/26	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/28
RA	1642	.	NC_000913	4619335	0	A	T	bias_e_value=3989560	bias_p_value=0.859513	consensus_score=166.1	fisher_strand_p_value=0.519192	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/32	major_frequency=9.636e-01	minor_base=G	minor_cov=0/2	new_cov=21/32	polymorphism_frequency=9.636e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=22/34
RA	1643	.	NC_000913	4619338	0	C	T	bias_e_value=3989560	bias_p_value=0.859513	consensus_score=162.1	fisher_strand_p_value=0.519192	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/32	major_frequency=9.636e-01	minor_base=G	minor_cov=0/2	new_cov=21/32	polymorphism_frequency=9.636e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/34
RA	1644	.	NC_000913	4619359	0	C	T	consensus_score=191.2	frequency=1	major_base=T	major_cov=23/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/36
RA	1645	.	NC_000913	4619393	0	C	T	bias_e_value=3945720	bias_p_value=0.850068	consensus_score=181.0	fisher_strand_p_value=0.520871	frequency=1	ks_quality_p_value=0.969681	major_base=T	major_cov=22/34	major_frequency=9.655e-01	minor_base=G	minor_cov=0/2	new_cov=22/34	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	1646	.	NC_000913	4619454	0	A	G	bias_e_value=3171690	bias_p_value=0.683311	consensus_score=125.2	fisher_strand_p_value=0.319149	frequency=1	ks_quality_p_value=0.999075	major_base=G	major_cov=14/32	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=14/32	polymorphism_frequency=9.787e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=15/32
RA	1647	.	NC_000913	4619917	0	T	C	bias_e_value=3762800	bias_p_value=0.81066	consensus_score=126.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.451672	major_base=C	major_cov=16/29	major_frequency=9.574e-01	minor_base=T	minor_cov=1/1	new_cov=16/29	polymorphism_frequency=9.574e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/1	total_cov=18/30
RA	1648	.	NC_000913	4620067	0	A	G	bias_e_value=4072890	bias_p_value=0.877465	consensus_score=129.1	fisher_strand_p_value=0.554757	frequency=1	ks_quality_p_value=0.987382	major_base=G	major_cov=26/16	major_frequency=9.333e-01	minor_base=A	minor_cov=1/2	new_cov=26/16	polymorphism_frequency=9.333e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/2	total_cov=27/18
RA	1649	.	NC_000913	4620145	0	T	C	bias_e_value=2165710	bias_p_value=0.466581	consensus_score=155.7	fisher_strand_p_value=0.167634	frequency=1	ks_quality_p_value=0.998521	major_base=C	major_cov=31/20	major_frequency=9.623e-01	minor_base=T	minor_cov=0/2	new_cov=31/20	polymorphism_frequency=9.623e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/2	total_cov=31/22
RA	1650	.	NC_000913	4620150	0	A	G	bias_e_value=3590020	bias_p_value=0.773437	consensus_score=150.6	fisher_strand_p_value=0.415094	frequency=1	ks_quality_p_value=0.982021	major_base=G	major_cov=31/21	major_frequency=9.811e-01	minor_base=A	minor_cov=0/1	new_cov=31/21	polymorphism_frequency=9.811e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/1	total_cov=31/22
RA	1651	.	NC_000913	4620154	0	T	C	bias_e_value=3607140	bias_p_value=0.777125	consensus_score=163.3	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/20	major_frequency=9.804e-01	minor_base=T	minor_cov=0/1	new_cov=30/20	polymorphism_frequency=9.804e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=0/1	total_cov=30/21
RA	1652	.	NC_000913	4620157	0	C	T	bias_e_value=3445170	bias_p_value=0.742228	consensus_score=153.1	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.936016	major_base=T	major_cov=30/19	major_frequency=9.800e-01	minor_base=C	minor_cov=0/1	new_cov=30/19	polymorphism_frequency=9.800e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=30/21
RA	1653	.	NC_000913	4620160	0	T	C	bias_e_value=1933980	bias_p_value=0.416657	consensus_score=150.6	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=0.341733	major_base=C	major_cov=30/20	major_frequency=9.804e-01	minor_base=T	minor_cov=0/1	new_cov=30/20	polymorphism_frequency=9.804e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=30/21
RA	1654	.	NC_000913	4620223	0	T	C	bias_e_value=3885750	bias_p_value=0.837148	consensus_score=185.1	fisher_strand_p_value=0.497965	frequency=1	ks_quality_p_value=0.9773	major_base=C	major_cov=35/30	major_frequency=9.701e-01	minor_base=A	minor_cov=2/0	new_cov=35/30	polymorphism_frequency=9.701e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/31
RA	1655	.	NC_000913	4620256	0	C	T	bias_e_value=4240610	bias_p_value=0.9136	consensus_score=192.2	fisher_strand_p_value=0.614237	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/32	major_frequency=9.412e-01	minor_base=G	minor_cov=3/1	new_cov=32/32	polymorphism_frequency=9.412e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=35/34
RA	1656	.	NC_000913	4620358	0	C	T	bias_e_value=4641570	bias_p_value=0.999983	consensus_score=169.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994173	major_base=T	major_cov=28/27	major_frequency=9.821e-01	minor_base=C	minor_cov=0/1	new_cov=28/27	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/28
RA	1657	.	NC_000913	4620385	0	G	A	bias_e_value=3620960	bias_p_value=0.780103	consensus_score=171.7	fisher_strand_p_value=0.491525	frequency=1	ks_quality_p_value=0.844587	major_base=A	major_cov=30/28	major_frequency=9.831e-01	minor_base=G	minor_cov=0/1	new_cov=30/28	polymorphism_frequency=9.831e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=31/29
RA	1658	.	NC_000913	4620415	0	A	G	bias_e_value=4639360	bias_p_value=0.999507	consensus_score=197.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.968753	major_base=G	major_cov=32/31	major_frequency=9.844e-01	minor_base=A	minor_cov=0/1	new_cov=32/31	polymorphism_frequency=9.844e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=32/32
RA	1659	.	NC_000913	4620427	0	G	A	bias_e_value=4636260	bias_p_value=0.998838	consensus_score=174.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.952179	major_base=A	major_cov=29/28	major_frequency=9.828e-01	minor_base=G	minor_cov=0/1	new_cov=29/28	polymorphism_frequency=9.828e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/1	total_cov=30/29
RA	1660	.	NC_000913	4620559	0	C	T	bias_e_value=3481530	bias_p_value=0.750062	consensus_score=191.7	fisher_strand_p_value=0.383333	frequency=1	ks_quality_p_value=0.997743	major_base=T	major_cov=22/37	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=22/37	polymorphism_frequency=9.833e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=1/0	total_cov=23/37
RA	1661	.	NC_000913	4620571	0	A	G	bias_e_value=3423660	bias_p_value=0.737595	consensus_score=186.8	fisher_strand_p_value=0.383333	frequency=1	ks_quality_p_value=0.964488	major_base=G	major_cov=22/37	major_frequency=9.833e-01	minor_base=A	minor_cov=1/0	new_cov=22/37	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/37
RA	1662	.	NC_000913	4620637	0	C	T	bias_e_value=3016180	bias_p_value=0.649808	consensus_score=163.7	fisher_strand_p_value=0.333333	frequency=1	ks_quality_p_value=0.871999	major_base=T	major_cov=17/36	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=17/36	polymorphism_frequency=9.815e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=19/36
RA	1663	.	NC_000913	4620652	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=156.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/33	major_frequency=9.615e-01	minor_base=G	minor_cov=0/2	new_cov=17/33	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/35
RA	1664	.	NC_000913	4620706	0	A	T	bias_e_value=2821110	bias_p_value=0.607782	consensus_score=140.1	fisher_strand_p_value=0.363636	frequency=1	ks_quality_p_value=0.709997	major_base=T	major_cov=15/28	major_frequency=9.773e-01	minor_base=A	minor_cov=1/0	new_cov=15/28	polymorphism_frequency=9.773e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=16/28
RA	1665	.	NC_000913	4620709	0	T	C	bias_e_value=2757980	bias_p_value=0.59418	consensus_score=133.4	fisher_strand_p_value=0.363636	frequency=1	ks_quality_p_value=0.682763	major_base=C	major_cov=15/28	major_frequency=9.773e-01	minor_base=T	minor_cov=1/0	new_cov=15/28	polymorphism_frequency=9.773e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=16/28
RA	1666	.	NC_000913	4620742	0	T	C	bias_e_value=2991970	bias_p_value=0.644591	consensus_score=119.1	fisher_strand_p_value=0.341463	frequency=1	ks_quality_p_value=0.838945	major_base=C	major_cov=13/27	major_frequency=9.756e-01	minor_base=T	minor_cov=1/0	new_cov=13/27	polymorphism_frequency=9.756e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=14/27
RA	1667	.	NC_000913	4620763	0	C	T	bias_e_value=3143920	bias_p_value=0.677328	consensus_score=117.7	fisher_strand_p_value=0.358974	frequency=1	ks_quality_p_value=0.873757	major_base=T	major_cov=13/25	major_frequency=9.744e-01	minor_base=C	minor_cov=1/0	new_cov=13/25	polymorphism_frequency=9.744e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=14/25
RA	1668	.	NC_000913	4620766	0	C	T	bias_e_value=4641230	bias_p_value=0.99991	consensus_score=114.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986577	major_base=T	major_cov=12/24	major_frequency=9.730e-01	minor_base=G	minor_cov=0/1	new_cov=12/24	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	1669	.	NC_000913	4621236	0	C	T	bias_e_value=3795120	bias_p_value=0.817623	consensus_score=133.9	fisher_strand_p_value=0.592969	frequency=1	ks_quality_p_value=0.77667	major_base=T	major_cov=24/20	major_frequency=9.362e-01	minor_base=C	minor_cov=1/2	new_cov=24/20	polymorphism_frequency=9.362e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/2	total_cov=25/22
RA	1670	.	NC_000913	4621278	0	C	T	bias_e_value=2843940	bias_p_value=0.612699	consensus_score=127.3	fisher_strand_p_value=0.489429	frequency=1	ks_quality_p_value=0.534972	major_base=T	major_cov=21/21	major_frequency=9.545e-01	minor_base=C	minor_cov=0/2	new_cov=21/21	polymorphism_frequency=9.545e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=0/2	total_cov=21/23
RA	1671	.	NC_000913	4621296	0	A	G	bias_e_value=767387	bias_p_value=0.165326	consensus_score=139.1	fisher_strand_p_value=0.504348	frequency=1	ks_quality_p_value=0.077207	major_base=G	major_cov=19/25	major_frequency=9.565e-01	minor_base=A	minor_cov=0/2	new_cov=19/25	polymorphism_frequency=9.565e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/2	total_cov=19/27
RA	1672	.	NC_000913	4621302	0	T	C	bias_e_value=3232970	bias_p_value=0.696513	consensus_score=136.2	fisher_strand_p_value=0.505285	frequency=1	ks_quality_p_value=0.654265	major_base=C	major_cov=18/24	major_frequency=9.545e-01	minor_base=T	minor_cov=0/2	new_cov=18/24	polymorphism_frequency=9.545e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/2	total_cov=18/26
RA	1673	.	NC_000913	4621305	0	A	G	bias_e_value=717091	bias_p_value=0.154491	consensus_score=135.3	fisher_strand_p_value=0.505285	frequency=1	ks_quality_p_value=0.0705442	major_base=G	major_cov=18/24	major_frequency=9.545e-01	minor_base=A	minor_cov=0/2	new_cov=18/24	polymorphism_frequency=9.545e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/2	total_cov=18/26
RA	1674	.	NC_000913	4621321	0	A	G	bias_e_value=1090520	bias_p_value=0.234942	consensus_score=126.0	fisher_strand_p_value=0.497886	frequency=1	ks_quality_p_value=0.124919	major_base=G	major_cov=19/23	major_frequency=9.545e-01	minor_base=A	minor_cov=0/2	new_cov=19/23	polymorphism_frequency=9.545e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=0/2	total_cov=19/26
RA	1675	.	NC_000913	4621410	0	T	C	bias_e_value=3656570	bias_p_value=0.787772	consensus_score=141.3	fisher_strand_p_value=0.606784	frequency=1	ks_quality_p_value=0.698711	major_base=C	major_cov=17/33	major_frequency=9.259e-01	minor_base=T	minor_cov=2/2	new_cov=17/33	polymorphism_frequency=9.259e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=2/2	total_cov=20/35
RA	1676	.	NC_000913	4621458	0	A	G	bias_e_value=4011440	bias_p_value=0.864226	consensus_score=118.0	fisher_strand_p_value=0.607611	frequency=1	ks_quality_p_value=0.866442	major_base=G	major_cov=14/27	major_frequency=9.111e-01	minor_base=A	minor_cov=2/2	new_cov=14/27	polymorphism_frequency=9.111e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=2/2	total_cov=16/29
RA	1677	.	NC_000913	4621491	0	A	G	bias_e_value=2005190	bias_p_value=0.431998	consensus_score=104.9	fisher_strand_p_value=0.148649	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=9/26	major_frequency=8.750e-01	minor_base=A	minor_cov=3/2	new_cov=9/26	polymorphism_frequency=8.750e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=3/2	total_cov=13/28
RA	1678	.	NC_000913	4621542	0	T	C	bias_e_value=3468940	bias_p_value=0.74735	consensus_score=79.3	fisher_strand_p_value=0.627178	frequency=1	ks_quality_p_value=0.605343	major_base=C	major_cov=11/19	major_frequency=8.824e-01	minor_base=T	minor_cov=2/2	new_cov=11/19	polymorphism_frequency=8.824e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=2/2	total_cov=13/21
RA	1679	.	NC_000913	4621627	0	C	T	bias_e_value=3320130	bias_p_value=0.71529	consensus_score=21.2	fisher_strand_p_value=0.469697	frequency=1	ks_quality_p_value=0.740818	major_base=T	major_cov=5/5	major_frequency=8.333e-01	minor_base=C	minor_cov=0/2	new_cov=5/5	polymorphism_frequency=8.333e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=0/2	total_cov=5/7
RA	1680	.	NC_000913	4621629	0	T	G	bias_e_value=2453070	bias_p_value=0.528491	consensus_score=22.1	fisher_strand_p_value=0.469697	frequency=1	ks_quality_p_value=0.434598	major_base=G	major_cov=5/5	major_frequency=8.333e-01	minor_base=T	minor_cov=0/2	new_cov=5/5	polymorphism_frequency=8.333e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=0/2	total_cov=5/7
RA	1681	.	NC_000913	4621633	0	G	T	bias_e_value=3604260	bias_p_value=0.776505	consensus_score=24.4	fisher_strand_p_value=0.469697	frequency=1	ks_quality_p_value=0.875173	major_base=T	major_cov=5/5	major_frequency=8.333e-01	minor_base=G	minor_cov=0/2	new_cov=5/5	polymorphism_frequency=8.333e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=0/2	total_cov=5/7
RA	1682	.	NC_000913	4621644	0	G	A	consensus_score=28.2	frequency=1	major_base=A	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	1683	.	NC_000913	4623110	0	A	C	bias_e_value=2987580	bias_p_value=0.643647	consensus_score=14.3	fisher_strand_p_value=0.285714	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/1	major_frequency=8.571e-01	minor_base=A	minor_cov=0/1	new_cov=5/1	polymorphism_frequency=8.571e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=5/2
RA	1684	.	NC_000913	4623119	0	C	T	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=16.5	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/3	major_frequency=8.889e-01	minor_base=C	minor_cov=0/1	new_cov=5/3	polymorphism_frequency=8.889e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=5/4
RA	1685	.	NC_000913	4623125	0	T	C	bias_e_value=3548120	bias_p_value=0.764408	consensus_score=14.0	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.894839	major_base=C	major_cov=5/3	major_frequency=8.889e-01	minor_base=T	minor_cov=0/1	new_cov=5/3	polymorphism_frequency=8.889e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=5/4
RA	1686	.	NC_000913	4623127	0	C	T	bias_e_value=3689260	bias_p_value=0.794816	consensus_score=16.6	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.972604	major_base=T	major_cov=5/3	major_frequency=8.889e-01	minor_base=C	minor_cov=0/1	new_cov=5/3	polymorphism_frequency=8.889e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=5/4
RA	1687	.	NC_000913	4623131	0	T	C	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=17.1	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/3	major_frequency=8.889e-01	minor_base=T	minor_cov=0/1	new_cov=5/3	polymorphism_frequency=8.889e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=5/4
RA	1688	.	NC_000913	4623136	0	C	T	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=15.9	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/2	major_frequency=8.750e-01	minor_base=C	minor_cov=0/1	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=5/4
RA	1689	.	NC_000913	4623155	0	T	G	bias_e_value=4556380	bias_p_value=0.981629	consensus_score=34.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.814543	major_base=G	major_cov=6/6	major_frequency=9.231e-01	minor_base=T	minor_cov=0/1	new_cov=6/6	polymorphism_frequency=9.231e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=6/7
RA	1690	.	NC_000913	4623188	0	C	T	bias_e_value=3258090	bias_p_value=0.701924	consensus_score=52.0	fisher_strand_p_value=0.368421	frequency=1	ks_quality_p_value=0.910677	major_base=T	major_cov=12/6	major_frequency=9.474e-01	minor_base=A	minor_cov=0/1	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=12/7
RA	1691	.	NC_000913	4623203	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=54.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/6	major_frequency=9.000e-01	minor_base=A	minor_cov=2/0	new_cov=12/6	polymorphism_frequency=9.000e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=14/7
RA	1692	.	NC_000913	4623230	0	T	C	bias_e_value=3090400	bias_p_value=0.665798	consensus_score=61.6	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=0.776496	major_base=C	major_cov=14/8	major_frequency=9.565e-01	minor_base=T	minor_cov=0/1	new_cov=14/8	polymorphism_frequency=9.565e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=15/9
RA	1693	.	NC_000913	4623336	0	G	C	consensus_score=130.2	frequency=1	major_base=C	major_cov=24/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/17
RA	1694	.	NC_000913	4623404	0	G	A	bias_e_value=2668450	bias_p_value=0.574892	consensus_score=129.3	fisher_strand_p_value=0.246377	frequency=1	ks_quality_p_value=0.952625	major_base=A	major_cov=23/20	major_frequency=9.348e-01	minor_base=C	minor_cov=3/0	new_cov=23/20	polymorphism_frequency=9.348e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/21
RA	1695	.	NC_000913	4623448	0	T	C	bias_e_value=3831950	bias_p_value=0.825558	consensus_score=138.5	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=0.98466	major_base=C	major_cov=21/24	major_frequency=9.783e-01	minor_base=A	minor_cov=1/0	new_cov=21/24	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/24
RA	1696	.	NC_000913	4623470	0	C	T	bias_e_value=4636610	bias_p_value=0.998914	consensus_score=143.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.95376	major_base=T	major_cov=23/22	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=23/22	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	1697	.	NC_000913	4623473	0	G	A	bias_e_value=4614660	bias_p_value=0.994184	consensus_score=140.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.894104	major_base=A	major_cov=23/23	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=23/23	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	1698	.	NC_000913	4623502	0	C	T	consensus_score=144.1	frequency=1	major_base=T	major_cov=25/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/21
RA	1699	.	NC_000913	4623544	0	A	G	bias_e_value=3293620	bias_p_value=0.709579	consensus_score=156.4	fisher_strand_p_value=0.46	frequency=1	ks_quality_p_value=0.74476	major_base=G	major_cov=22/27	major_frequency=9.800e-01	minor_base=A	minor_cov=1/0	new_cov=22/27	polymorphism_frequency=9.800e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=23/27
RA	1700	.	NC_000913	4623575	0	T	C	bias_e_value=2481780	bias_p_value=0.534676	consensus_score=120.2	fisher_strand_p_value=0.592969	frequency=1	ks_quality_p_value=0.350853	major_base=C	major_cov=20/24	major_frequency=9.362e-01	minor_base=T	minor_cov=2/1	new_cov=20/24	polymorphism_frequency=9.362e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=2/1	total_cov=22/25
RA	1701	.	NC_000913	4623578	0	C	T	bias_e_value=2592670	bias_p_value=0.558565	consensus_score=125.2	fisher_strand_p_value=0.592969	frequency=1	ks_quality_p_value=0.377125	major_base=T	major_cov=20/24	major_frequency=9.362e-01	minor_base=C	minor_cov=2/1	new_cov=20/24	polymorphism_frequency=9.362e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=22/25
RA	1702	.	NC_000913	4623581	0	C	G	bias_e_value=2983290	bias_p_value=0.642721	consensus_score=135.7	fisher_strand_p_value=0.6	frequency=1	ks_quality_p_value=0.474961	major_base=G	major_cov=20/23	major_frequency=9.348e-01	minor_base=C	minor_cov=2/1	new_cov=20/23	polymorphism_frequency=9.348e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=2/1	total_cov=22/25
RA	1703	.	NC_000913	4623641	0	G	A	bias_e_value=3856880	bias_p_value=0.830929	consensus_score=141.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.47813	major_base=A	major_cov=24/23	major_frequency=9.400e-01	minor_base=G	minor_cov=2/1	new_cov=24/23	polymorphism_frequency=9.400e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=26/24
RA	1704	.	NC_000913	4623656	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=129.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=24/20	major_frequency=9.167e-01	minor_base=T	minor_cov=2/2	new_cov=24/20	polymorphism_frequency=9.167e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=2/2	total_cov=26/22
RA	1705	.	NC_000913	4623680	0	G	A	bias_e_value=4583540	bias_p_value=0.98748	consensus_score=122.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.84599	major_base=A	major_cov=21/20	major_frequency=9.762e-01	minor_base=G	minor_cov=1/0	new_cov=21/20	polymorphism_frequency=9.762e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=22/20
RA	1706	.	NC_000913	4623707	0	G	T	bias_e_value=4624060	bias_p_value=0.99621	consensus_score=135.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.914204	major_base=T	major_cov=22/20	major_frequency=9.767e-01	minor_base=G	minor_cov=1/0	new_cov=22/20	polymorphism_frequency=9.767e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=23/20
RA	1707	.	NC_000913	4623732	0	A	G	bias_e_value=4626860	bias_p_value=0.996812	consensus_score=123.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.921225	major_base=G	major_cov=21/18	major_frequency=9.750e-01	minor_base=A	minor_cov=1/0	new_cov=21/18	polymorphism_frequency=9.750e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=22/19
RA	1708	.	NC_000913	4623758	0	T	C	bias_e_value=4630530	bias_p_value=0.997604	consensus_score=120.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.931578	major_base=C	major_cov=23/19	major_frequency=9.767e-01	minor_base=T	minor_cov=1/0	new_cov=23/19	polymorphism_frequency=9.767e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=24/19
RA	1709	.	NC_000913	4623782	0	G	A	bias_e_value=1226780	bias_p_value=0.264297	consensus_score=116.1	fisher_strand_p_value=0.0730897	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/18	major_frequency=8.889e-01	minor_base=C	minor_cov=5/0	new_cov=22/18	polymorphism_frequency=8.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/18
RA	1710	.	NC_000913	4623821	0	A	G	bias_e_value=2719110	bias_p_value=0.585807	consensus_score=160.2	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=0.58849	major_base=G	major_cov=30/20	major_frequency=9.804e-01	minor_base=A	minor_cov=0/1	new_cov=30/20	polymorphism_frequency=9.804e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=30/21
RA	1711	.	NC_000913	4623911	0	C	T	bias_e_value=3944090	bias_p_value=0.849718	consensus_score=213.1	fisher_strand_p_value=0.504566	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/31	major_frequency=9.726e-01	minor_base=G	minor_cov=2/0	new_cov=40/31	polymorphism_frequency=9.726e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/32
RA	1712	.	NC_000913	4623983	0	T	C	bias_e_value=3683190	bias_p_value=0.793509	consensus_score=259.8	fisher_strand_p_value=0.4625	frequency=1	ks_quality_p_value=0.931273	major_base=C	major_cov=43/36	major_frequency=9.875e-01	minor_base=T	minor_cov=0/1	new_cov=43/36	polymorphism_frequency=9.875e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=43/37
RA	1713	.	NC_000913	4624037	0	T	C	bias_e_value=4641620	bias_p_value=0.999994	consensus_score=197.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996441	major_base=C	major_cov=33/33	major_frequency=9.706e-01	minor_base=T	minor_cov=1/1	new_cov=33/33	polymorphism_frequency=9.706e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=34/34
RA	1714	.	NC_000913	4624055	0	T	C	consensus_score=234.2	frequency=1	major_base=C	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	1715	.	NC_000913	4624226	0	G	A	bias_e_value=4641360	bias_p_value=0.999938	consensus_score=160.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988881	major_base=A	major_cov=22/31	major_frequency=9.815e-01	minor_base=C	minor_cov=0/1	new_cov=22/31	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/32
RA	1716	.	NC_000913	4624262	0	A	G	bias_e_value=4613030	bias_p_value=0.993834	consensus_score=149.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.891023	major_base=G	major_cov=22/30	major_frequency=9.630e-01	minor_base=A	minor_cov=1/1	new_cov=22/30	polymorphism_frequency=9.630e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/1	total_cov=24/31
RA	1717	.	NC_000913	4624277	0	G	A	bias_e_value=1962600	bias_p_value=0.422825	consensus_score=172.9	fisher_strand_p_value=0.203634	frequency=1	ks_quality_p_value=0.706545	major_base=A	major_cov=24/31	major_frequency=9.649e-01	minor_base=G	minor_cov=2/0	new_cov=24/31	polymorphism_frequency=9.649e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=2/0	total_cov=26/31
RA	1718	.	NC_000913	4624355	0	T	C	bias_e_value=269257	bias_p_value=0.0580089	consensus_score=148.4	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=0.0211283	major_base=C	major_cov=28/26	major_frequency=9.643e-01	minor_base=T	minor_cov=2/0	new_cov=28/26	polymorphism_frequency=9.643e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=2/0	total_cov=31/26
RA	1719	.	NC_000913	4624388	0	A	C	bias_e_value=2676130	bias_p_value=0.576548	consensus_score=156.0	fisher_strand_p_value=0.235849	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=24/27	major_frequency=9.444e-01	minor_base=T	minor_cov=3/0	new_cov=24/27	polymorphism_frequency=9.444e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=2/0	total_cov=29/28
RA	1720	.	NC_000913	4624391	0	C	G	bias_e_value=2211960	bias_p_value=0.476546	consensus_score=167.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.173013	major_base=G	major_cov=27/27	major_frequency=9.474e-01	minor_base=C	minor_cov=2/1	new_cov=27/27	polymorphism_frequency=9.474e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=2/1	total_cov=29/28
RA	1721	.	NC_000913	4624400	0	C	T	bias_e_value=528837	bias_p_value=0.113933	consensus_score=157.9	fisher_strand_p_value=0.491265	frequency=1	ks_quality_p_value=0.0490829	major_base=T	major_cov=26/26	major_frequency=9.630e-01	minor_base=C	minor_cov=2/0	new_cov=26/26	polymorphism_frequency=9.630e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=2/0	total_cov=29/27
RA	1722	.	NC_000913	4624430	0	T	C	bias_e_value=1037400	bias_p_value=0.223499	consensus_score=124.9	fisher_strand_p_value=0.601064	frequency=1	ks_quality_p_value=0.096703	major_base=C	major_cov=21/24	major_frequency=9.375e-01	minor_base=T	minor_cov=2/1	new_cov=21/24	polymorphism_frequency=9.375e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=23/25
RA	1723	.	NC_000913	4624487	0	T	G	bias_e_value=3530150	bias_p_value=0.760537	consensus_score=140.6	fisher_strand_p_value=0.595486	frequency=1	ks_quality_p_value=0.660858	major_base=G	major_cov=22/26	major_frequency=9.412e-01	minor_base=T	minor_cov=2/1	new_cov=22/26	polymorphism_frequency=9.412e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=2/1	total_cov=24/27
RA	1724	.	NC_000913	4624517	0	A	G	bias_e_value=3971840	bias_p_value=0.855695	consensus_score=134.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.513417	major_base=G	major_cov=22/26	major_frequency=9.600e-01	minor_base=A	minor_cov=1/1	new_cov=22/26	polymorphism_frequency=9.600e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=23/27
RA	1725	.	NC_000913	4624586	0	T	C	bias_e_value=3841450	bias_p_value=0.827604	consensus_score=166.6	fisher_strand_p_value=0.496753	frequency=1	ks_quality_p_value=0.953497	major_base=C	major_cov=25/29	major_frequency=9.643e-01	minor_base=T	minor_cov=0/2	new_cov=25/29	polymorphism_frequency=9.643e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/2	total_cov=25/31
RA	1726	.	NC_000913	4624622	0	C	T	bias_e_value=3158380	bias_p_value=0.680443	consensus_score=202.9	fisher_strand_p_value=0.493442	frequency=1	ks_quality_p_value=0.641115	major_base=T	major_cov=32/33	major_frequency=9.701e-01	minor_base=C	minor_cov=0/2	new_cov=32/33	polymorphism_frequency=9.701e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/2	total_cov=32/36
RA	1727	.	NC_000913	4624670	0	C	T	bias_e_value=2719600	bias_p_value=0.585912	consensus_score=227.1	fisher_strand_p_value=0.492958	frequency=1	ks_quality_p_value=0.491713	major_base=T	major_cov=36/34	major_frequency=9.859e-01	minor_base=C	minor_cov=0/1	new_cov=36/34	polymorphism_frequency=9.859e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=36/35
RA	1728	.	NC_000913	4625044	0	A	G	bias_e_value=4013510	bias_p_value=0.864673	consensus_score=152.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.527157	major_base=G	major_cov=25/24	major_frequency=9.608e-01	minor_base=A	minor_cov=1/1	new_cov=25/24	polymorphism_frequency=9.608e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/1	total_cov=26/26
RA	1729	.	NC_000913	4625158	0	A	G	bias_e_value=3892170	bias_p_value=0.83853	consensus_score=147.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.488585	major_base=G	major_cov=29/22	major_frequency=9.623e-01	minor_base=A	minor_cov=1/1	new_cov=29/22	polymorphism_frequency=9.623e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=30/23
RA	1730	.	NC_000913	4625170	0	C	T	bias_e_value=4140520	bias_p_value=0.892036	consensus_score=150.5	fisher_strand_p_value=0.57291	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/21	major_frequency=9.434e-01	minor_base=C	minor_cov=1/2	new_cov=29/21	polymorphism_frequency=9.434e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/2	total_cov=30/23
RA	1731	.	NC_000913	4625179	0	G	A	bias_e_value=3105870	bias_p_value=0.669131	consensus_score=127.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.306655	major_base=A	major_cov=25/20	major_frequency=9.574e-01	minor_base=G	minor_cov=1/1	new_cov=25/20	polymorphism_frequency=9.574e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=26/22
RA	1732	.	NC_000913	4625242	0	T	C	bias_e_value=4641240	bias_p_value=0.999912	consensus_score=152.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98677	major_base=C	major_cov=25/26	major_frequency=9.623e-01	minor_base=A	minor_cov=1/1	new_cov=25/26	polymorphism_frequency=9.623e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	1733	.	NC_000913	4625248	0	C	T	consensus_score=160.2	frequency=1	major_base=T	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	1734	.	NC_000913	4625377	0	T	C	consensus_score=193.2	frequency=1	major_base=C	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	1735	.	NC_000913	4625533	0	C	T	bias_e_value=3753100	bias_p_value=0.80857	consensus_score=167.1	fisher_strand_p_value=0.45614	frequency=1	ks_quality_p_value=0.984458	major_base=T	major_cov=31/25	major_frequency=9.825e-01	minor_base=G	minor_cov=0/1	new_cov=31/25	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/26
RA	1736	.	NC_000913	4625546	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=185.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997817	major_base=T	major_cov=35/25	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=35/25	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/25
RA	1737	.	NC_000913	4626042	0	T	C	consensus_score=226.7	frequency=1	major_base=C	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	1738	.	NC_000913	4626245	0	C	T	bias_e_value=2196780	bias_p_value=0.473275	consensus_score=214.3	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.363705	major_base=T	major_cov=31/36	major_frequency=9.853e-01	minor_base=C	minor_cov=1/0	new_cov=31/36	polymorphism_frequency=9.853e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=33/36
RA	1739	.	NC_000913	4626247	0	A	G	bias_e_value=2769660	bias_p_value=0.596698	consensus_score=219.6	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=0.522914	major_base=G	major_cov=32/36	major_frequency=9.855e-01	minor_base=A	minor_cov=1/0	new_cov=32/36	polymorphism_frequency=9.855e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=33/36
RA	1740	.	NC_000913	4626391	0	A	G	bias_e_value=3867420	bias_p_value=0.833199	consensus_score=146.8	fisher_strand_p_value=0.493213	frequency=1	ks_quality_p_value=0.975685	major_base=G	major_cov=26/24	major_frequency=9.615e-01	minor_base=A	minor_cov=2/0	new_cov=26/24	polymorphism_frequency=9.615e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=2/0	total_cov=28/24
RA	1741	.	NC_000913	4626487	0	T	C	consensus_score=142.7	frequency=1	major_base=C	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	1742	.	NC_000913	4626521	0	T	C	consensus_score=165.7	frequency=1	major_base=C	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	1743	.	NC_000913	4626526	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=151.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=24/29	major_frequency=9.815e-01	minor_base=T	minor_cov=0/1	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	1744	.	NC_000913	4626565	0	G	T	bias_e_value=3564180	bias_p_value=0.767869	consensus_score=174.1	fisher_strand_p_value=0.507424	frequency=1	ks_quality_p_value=0.79121	major_base=T	major_cov=26/35	major_frequency=9.683e-01	minor_base=G	minor_cov=0/2	new_cov=26/35	polymorphism_frequency=9.683e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/2	total_cov=26/37
RA	1745	.	NC_000913	4626568	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=173.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/36	major_frequency=9.677e-01	minor_base=G	minor_cov=1/1	new_cov=24/36	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=26/37
RA	1746	.	NC_000913	4626586	0	T	C	bias_e_value=2871320	bias_p_value=0.618599	consensus_score=162.6	fisher_strand_p_value=0.266261	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=25/34	major_frequency=9.516e-01	minor_base=T	minor_cov=0/3	new_cov=25/34	polymorphism_frequency=9.516e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/3	total_cov=26/37
RA	1747	.	NC_000913	4626595	0	T	G	bias_e_value=2839610	bias_p_value=0.611768	consensus_score=181.6	fisher_strand_p_value=0.261137	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=26/34	major_frequency=9.524e-01	minor_base=T	minor_cov=0/3	new_cov=26/34	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=26/37
RA	1748	.	NC_000913	4626601	0	G	T	bias_e_value=3901760	bias_p_value=0.840597	consensus_score=185.5	fisher_strand_p_value=0.516369	frequency=1	ks_quality_p_value=0.951805	major_base=T	major_cov=25/37	major_frequency=9.688e-01	minor_base=G	minor_cov=0/2	new_cov=25/37	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=26/39
RA	1749	.	NC_000913	4626670	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=180.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/36	major_frequency=9.667e-01	minor_base=C	minor_cov=1/1	new_cov=22/36	polymorphism_frequency=9.667e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/1	total_cov=23/38
RA	1750	.	NC_000913	4626673	0	G	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=172.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997743	major_base=A	major_cov=22/37	major_frequency=9.833e-01	minor_base=G	minor_cov=0/1	new_cov=22/37	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=23/38
RA	1751	.	NC_000913	4626784	0	C	A	bias_e_value=3743320	bias_p_value=0.806462	consensus_score=174.6	fisher_strand_p_value=0.446429	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/31	major_frequency=9.821e-01	minor_base=G	minor_cov=1/0	new_cov=24/31	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	1752	.	NC_000913	4626802	0	T	C	consensus_score=178.0	frequency=1	major_base=C	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	1753	.	NC_000913	4626808	0	A	C	bias_e_value=3926860	bias_p_value=0.846005	consensus_score=163.0	fisher_strand_p_value=0.502262	frequency=1	ks_quality_p_value=0.993865	major_base=C	major_cov=22/28	major_frequency=9.615e-01	minor_base=.	minor_cov=0/2	new_cov=22/28	polymorphism_frequency=9.615e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	1754	.	NC_000913	4626820	0	A	G	bias_e_value=3651830	bias_p_value=0.786753	consensus_score=147.7	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.986487	major_base=G	major_cov=20/28	major_frequency=9.796e-01	minor_base=A	minor_cov=1/0	new_cov=20/28	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=21/28
RA	1755	.	NC_000913	4626838	0	A	G	consensus_score=159.4	frequency=1	major_base=G	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	1756	.	NC_000913	4626839	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=143.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/25	major_frequency=9.583e-01	minor_base=G	minor_cov=1/1	new_cov=21/25	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	1757	.	NC_000913	4626886	0	C	T	bias_e_value=4630240	bias_p_value=0.997542	consensus_score=150.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.930709	major_base=T	major_cov=23/24	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=23/24	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	1758	.	NC_000913	4626889	0	A	G	consensus_score=152.5	frequency=1	major_base=G	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	1759	.	NC_000913	4626943	0	G	C	consensus_score=141.3	frequency=1	major_base=C	major_cov=24/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/18
RA	1760	.	NC_000913	4627027	0	T	C	bias_e_value=4641050	bias_p_value=0.999871	consensus_score=134.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983968	major_base=C	major_cov=23/21	major_frequency=9.778e-01	minor_base=A	minor_cov=1/0	new_cov=23/21	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	1761	.	NC_000913	4627069	0	C	T	bias_e_value=4227540	bias_p_value=0.910783	consensus_score=136.5	fisher_strand_p_value=0.608511	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/21	major_frequency=9.362e-01	minor_base=G	minor_cov=1/2	new_cov=23/21	polymorphism_frequency=9.362e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	1762	.	NC_000913	4627084	0	G	A	bias_e_value=2151100	bias_p_value=0.463434	consensus_score=137.7	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=0.352866	major_base=A	major_cov=22/26	major_frequency=9.796e-01	minor_base=G	minor_cov=1/0	new_cov=22/26	polymorphism_frequency=9.796e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=24/26
RA	1763	.	NC_000913	4627159	0	C	T	bias_e_value=2192170	bias_p_value=0.472282	consensus_score=167.1	fisher_strand_p_value=0.482143	frequency=1	ks_quality_p_value=0.353822	major_base=T	major_cov=26/29	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=26/29	polymorphism_frequency=9.821e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=27/29
RA	1764	.	NC_000913	4627162	0	T	A	bias_e_value=3476710	bias_p_value=0.749025	consensus_score=170.0	fisher_strand_p_value=0.482143	frequency=1	ks_quality_p_value=0.791033	major_base=A	major_cov=26/29	major_frequency=9.821e-01	minor_base=T	minor_cov=1/0	new_cov=26/29	polymorphism_frequency=9.821e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=27/29
RA	1765	.	NC_000913	4627213	0	G	A	bias_e_value=2925740	bias_p_value=0.630323	consensus_score=198.5	fisher_strand_p_value=0.377049	frequency=1	ks_quality_p_value=0.729968	major_base=A	major_cov=22/38	major_frequency=9.836e-01	minor_base=G	minor_cov=1/0	new_cov=22/38	polymorphism_frequency=9.836e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=23/38
RA	1766	.	NC_000913	4627299	0	A	G	bias_e_value=3426960	bias_p_value=0.738305	consensus_score=152.2	fisher_strand_p_value=0.382979	frequency=1	ks_quality_p_value=0.967246	major_base=G	major_cov=17/29	major_frequency=9.787e-01	minor_base=A	minor_cov=1/0	new_cov=17/29	polymorphism_frequency=9.787e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=18/29
RA	1767	.	NC_000913	4627300	0	T	A	bias_e_value=3406420	bias_p_value=0.733881	consensus_score=142.0	fisher_strand_p_value=0.382979	frequency=1	ks_quality_p_value=0.955684	major_base=A	major_cov=17/29	major_frequency=9.787e-01	minor_base=T	minor_cov=1/0	new_cov=17/29	polymorphism_frequency=9.787e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=18/29
RA	1768	.	NC_000913	4627377	0	A	G	bias_e_value=4583540	bias_p_value=0.98748	consensus_score=128.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.84599	major_base=G	major_cov=13/28	major_frequency=9.762e-01	minor_base=A	minor_cov=0/1	new_cov=13/28	polymorphism_frequency=9.762e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=13/29
RA	1769	.	NC_000913	4627509	0	G	C	bias_e_value=3975490	bias_p_value=0.856482	consensus_score=91.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.514599	major_base=C	major_cov=10/19	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=10/19	polymorphism_frequency=9.667e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/1	total_cov=10/20
RA	1770	.	NC_000913	4627512	0	C	T	bias_e_value=4290720	bias_p_value=0.924396	consensus_score=90.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.637262	major_base=T	major_cov=10/19	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=10/19	polymorphism_frequency=9.667e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=10/20
RA	1771	.	NC_000913	4627518	0	C	G	bias_e_value=3010960	bias_p_value=0.648684	consensus_score=91.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.289758	major_base=G	major_cov=11/19	major_frequency=9.677e-01	minor_base=C	minor_cov=0/1	new_cov=11/19	polymorphism_frequency=9.677e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/1	total_cov=11/20
RA	1772	.	NC_000913	4627539	0	A	G	bias_e_value=2295870	bias_p_value=0.494624	consensus_score=96.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.183496	major_base=G	major_cov=12/19	major_frequency=9.688e-01	minor_base=A	minor_cov=0/1	new_cov=12/19	polymorphism_frequency=9.688e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=12/20
RA	1773	.	NC_000913	4627593	0	G	A	bias_e_value=2485210	bias_p_value=0.535414	consensus_score=90.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.208515	major_base=A	major_cov=13/17	major_frequency=9.677e-01	minor_base=G	minor_cov=0/1	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=13/18
RA	1774	.	NC_000913	4627626	0	T	C	bias_e_value=4348010	bias_p_value=0.936738	consensus_score=100.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.666078	major_base=C	major_cov=18/17	major_frequency=9.722e-01	minor_base=T	minor_cov=1/0	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=19/17
RA	1775	.	NC_000913	4627629	0	C	T	bias_e_value=3329080	bias_p_value=0.717218	consensus_score=107.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.349791	major_base=T	major_cov=18/16	major_frequency=9.714e-01	minor_base=C	minor_cov=1/0	new_cov=18/16	polymorphism_frequency=9.714e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=19/17
RA	1776	.	NC_000913	4627641	0	C	T	bias_e_value=2994200	bias_p_value=0.645073	consensus_score=127.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.286854	major_base=T	major_cov=21/19	major_frequency=9.756e-01	minor_base=C	minor_cov=1/0	new_cov=21/19	polymorphism_frequency=9.756e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=22/19
RA	1777	.	NC_000913	4627650	0	T	C	bias_e_value=3968150	bias_p_value=0.8549	consensus_score=124.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.512226	major_base=C	major_cov=21/20	major_frequency=9.762e-01	minor_base=T	minor_cov=1/0	new_cov=21/20	polymorphism_frequency=9.762e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=22/20
RA	1778	.	NC_000913	4627653	0	C	T	bias_e_value=3778890	bias_p_value=0.814126	consensus_score=130.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.456059	major_base=T	major_cov=21/20	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=21/20	polymorphism_frequency=9.762e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=22/20
RA	1779	.	NC_000913	4627668	0	G	C	bias_e_value=4069910	bias_p_value=0.876824	consensus_score=138.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.546695	major_base=C	major_cov=22/23	major_frequency=9.783e-01	minor_base=G	minor_cov=1/0	new_cov=22/23	polymorphism_frequency=9.783e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=23/23
RA	1780	.	NC_000913	4627689	0	T	C	bias_e_value=4076910	bias_p_value=0.878332	consensus_score=148.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.549201	major_base=C	major_cov=24/23	major_frequency=9.792e-01	minor_base=T	minor_cov=1/0	new_cov=24/23	polymorphism_frequency=9.792e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=25/23
RA	1781	.	NC_000913	4627698	0	G	A	bias_e_value=3241180	bias_p_value=0.698282	consensus_score=152.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.332192	major_base=A	major_cov=26/22	major_frequency=9.796e-01	minor_base=G	minor_cov=1/0	new_cov=26/22	polymorphism_frequency=9.796e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=27/22
RA	1782	.	NC_000913	4627818	0	A	G	bias_e_value=4506100	bias_p_value=0.970796	consensus_score=153.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.768268	major_base=G	major_cov=30/21	major_frequency=9.444e-01	minor_base=A	minor_cov=2/1	new_cov=30/21	polymorphism_frequency=9.444e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/1	total_cov=32/23
RA	1783	.	NC_000913	4627824	0	C	T	bias_e_value=3600010	bias_p_value=0.775588	consensus_score=150.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.410036	major_base=T	major_cov=31/22	major_frequency=9.464e-01	minor_base=C	minor_cov=2/1	new_cov=31/22	polymorphism_frequency=9.464e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=33/24
RA	1784	.	NC_000913	4627833	0	T	C	bias_e_value=4473730	bias_p_value=0.963823	consensus_score=139.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.743365	major_base=C	major_cov=28/20	major_frequency=9.412e-01	minor_base=T	minor_cov=2/1	new_cov=28/20	polymorphism_frequency=9.412e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/1	total_cov=31/21
RA	1785	.	NC_000913	4627893	0	G	T	bias_e_value=2286410	bias_p_value=0.492585	consensus_score=139.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.182295	major_base=T	major_cov=25/20	major_frequency=9.574e-01	minor_base=G	minor_cov=1/1	new_cov=25/20	polymorphism_frequency=9.574e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=1/1	total_cov=26/21
RA	1786	.	NC_000913	4627986	0	C	G	bias_e_value=4518510	bias_p_value=0.973471	consensus_score=121.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.778679	major_base=G	major_cov=21/18	major_frequency=9.512e-01	minor_base=C	minor_cov=1/1	new_cov=21/18	polymorphism_frequency=9.512e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=1/1	total_cov=22/19
RA	1787	.	NC_000913	4628001	0	T	C	bias_e_value=3183430	bias_p_value=0.685839	consensus_score=117.2	fisher_strand_p_value=0.323475	frequency=1	ks_quality_p_value=0.992574	major_base=C	major_cov=22/17	major_frequency=9.070e-01	minor_base=T	minor_cov=1/3	new_cov=22/17	polymorphism_frequency=9.070e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=1/3	total_cov=23/20
RA	1788	.	NC_000913	4628007	0	G	A	bias_e_value=3914930	bias_p_value=0.843436	consensus_score=116.0	fisher_strand_p_value=0.583207	frequency=1	ks_quality_p_value=0.849616	major_base=A	major_cov=23/18	major_frequency=9.318e-01	minor_base=G	minor_cov=1/2	new_cov=23/18	polymorphism_frequency=9.318e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=1/2	total_cov=24/20
RA	1789	.	NC_000913	4628028	0	C	T	bias_e_value=4223460	bias_p_value=0.909904	consensus_score=135.8	fisher_strand_p_value=0.608511	frequency=1	ks_quality_p_value=0.997103	major_base=T	major_cov=23/21	major_frequency=9.362e-01	minor_base=C	minor_cov=1/2	new_cov=23/21	polymorphism_frequency=9.362e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/2	total_cov=24/24
RA	1790	.	NC_000913	4628082	0	C	T	bias_e_value=2971280	bias_p_value=0.640133	consensus_score=112.7	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=0.581559	major_base=T	major_cov=19/17	major_frequency=9.730e-01	minor_base=C	minor_cov=0/1	new_cov=19/17	polymorphism_frequency=9.730e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=19/18
RA	1791	.	NC_000913	4628106	0	C	T	bias_e_value=3946060	bias_p_value=0.850142	consensus_score=139.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.505186	major_base=T	major_cov=20/24	major_frequency=9.778e-01	minor_base=A	minor_cov=0/1	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	1792	.	NC_000913	4628160	0	T	C	bias_e_value=4005880	bias_p_value=0.863029	consensus_score=123.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.524599	major_base=C	major_cov=17/23	major_frequency=9.756e-01	minor_base=T	minor_cov=0/1	new_cov=17/23	polymorphism_frequency=9.756e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=17/24
RA	1793	.	NC_000913	4628163	0	C	T	bias_e_value=3406380	bias_p_value=0.733872	consensus_score=113.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.365998	major_base=T	major_cov=16/23	major_frequency=9.750e-01	minor_base=C	minor_cov=0/1	new_cov=16/23	polymorphism_frequency=9.750e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=17/24
RA	1794	.	NC_000913	4628190	0	T	A	bias_e_value=945945	bias_p_value=0.203795	consensus_score=115.5	fisher_strand_p_value=0.051344	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/27	major_frequency=9.318e-01	minor_base=C	minor_cov=3/0	new_cov=14/27	polymorphism_frequency=9.318e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=17/28
RA	1795	.	NC_000913	4628208	0	G	A	bias_e_value=2221670	bias_p_value=0.478638	consensus_score=156.4	fisher_strand_p_value=0.174208	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/30	major_frequency=9.615e-01	minor_base=C	minor_cov=2/0	new_cov=20/30	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=22/31
RA	1796	.	NC_000913	4628232	0	A	G	bias_e_value=4156630	bias_p_value=0.895507	consensus_score=172.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.579202	major_base=G	major_cov=25/30	major_frequency=9.821e-01	minor_base=A	minor_cov=0/1	new_cov=25/30	polymorphism_frequency=9.821e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=25/32
RA	1797	.	NC_000913	4628238	0	C	T	bias_e_value=4616180	bias_p_value=0.994513	consensus_score=160.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.897092	major_base=T	major_cov=22/29	major_frequency=9.808e-01	minor_base=C	minor_cov=0/1	new_cov=22/29	polymorphism_frequency=9.808e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=22/31
RA	1798	.	NC_000913	4628241	0	T	C	bias_e_value=4640270	bias_p_value=0.999702	consensus_score=160.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.975685	major_base=C	major_cov=21/29	major_frequency=9.615e-01	minor_base=A	minor_cov=1/1	new_cov=21/29	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	1799	.	NC_000913	4628244	0	C	T	consensus_score=162.1	frequency=1	major_base=T	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	1800	.	NC_000913	4628256	0	C	T	bias_e_value=3919750	bias_p_value=0.844474	consensus_score=151.1	fisher_strand_p_value=0.496983	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/27	major_frequency=9.615e-01	minor_base=G	minor_cov=0/2	new_cov=23/27	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/29
RA	1801	.	NC_000913	4628259	0	T	C	bias_e_value=3274390	bias_p_value=0.705437	consensus_score=162.1	fisher_strand_p_value=0.45283	frequency=1	ks_quality_p_value=0.748057	major_base=C	major_cov=23/29	major_frequency=9.811e-01	minor_base=T	minor_cov=1/0	new_cov=23/29	polymorphism_frequency=9.811e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=24/29
RA	1802	.	NC_000913	4628289	0	G	T	bias_e_value=4622100	bias_p_value=0.995788	consensus_score=164.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.909637	major_base=T	major_cov=25/26	major_frequency=9.623e-01	minor_base=G	minor_cov=1/1	new_cov=25/26	polymorphism_frequency=9.623e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/1	total_cov=26/27
RA	1803	.	NC_000913	4628292	0	A	G	bias_e_value=2870760	bias_p_value=0.618478	consensus_score=152.5	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=0.553634	major_base=G	major_cov=24/27	major_frequency=9.808e-01	minor_base=A	minor_cov=1/0	new_cov=24/27	polymorphism_frequency=9.808e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=26/27
RA	1804	.	NC_000913	4628304	0	G	A	bias_e_value=2898000	bias_p_value=0.624348	consensus_score=180.6	fisher_strand_p_value=0.474576	frequency=1	ks_quality_p_value=0.570262	major_base=A	major_cov=27/31	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=27/31	polymorphism_frequency=9.831e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=28/31
RA	1805	.	NC_000913	4628311	0	C	T	bias_e_value=2664740	bias_p_value=0.574094	consensus_score=189.3	fisher_strand_p_value=0.47541	frequency=1	ks_quality_p_value=0.492532	major_base=T	major_cov=28/32	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=28/32	polymorphism_frequency=9.836e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=29/32
RA	1806	.	NC_000913	4628442	0	C	G	bias_e_value=3678890	bias_p_value=0.792581	consensus_score=229.5	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.945151	major_base=G	major_cov=29/36	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=29/36	polymorphism_frequency=9.848e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=30/36
RA	1807	.	NC_000913	4628463	0	T	C	bias_e_value=3846630	bias_p_value=0.828721	consensus_score=198.7	fisher_strand_p_value=0.47541	frequency=1	ks_quality_p_value=0.999454	major_base=C	major_cov=28/32	major_frequency=9.836e-01	minor_base=T	minor_cov=1/0	new_cov=28/32	polymorphism_frequency=9.836e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=1/0	total_cov=29/32
RA	1808	.	NC_000913	4628481	0	A	C	bias_e_value=3678800	bias_p_value=0.792562	consensus_score=197.0	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.887821	major_base=C	major_cov=29/32	major_frequency=9.839e-01	minor_base=A	minor_cov=1/0	new_cov=29/32	polymorphism_frequency=9.839e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=30/33
RA	1809	.	NC_000913	4628487	0	C	T	bias_e_value=3670970	bias_p_value=0.790875	consensus_score=191.3	fisher_strand_p_value=0.491803	frequency=1	ks_quality_p_value=0.869453	major_base=T	major_cov=29/31	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=29/31	polymorphism_frequency=9.836e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=30/31
RA	1810	.	NC_000913	4628493	0	T	C	bias_e_value=3363000	bias_p_value=0.724526	consensus_score=190.7	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.737418	major_base=C	major_cov=29/32	major_frequency=9.839e-01	minor_base=T	minor_cov=1/0	new_cov=29/32	polymorphism_frequency=9.839e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=31/32
RA	1811	.	NC_000913	4628514	0	A	G	bias_e_value=3264930	bias_p_value=0.703399	consensus_score=199.0	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.707418	major_base=G	major_cov=29/33	major_frequency=9.841e-01	minor_base=A	minor_cov=1/0	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=30/33
RA	1812	.	NC_000913	4628551	0	T	C	bias_e_value=3300050	bias_p_value=0.710964	consensus_score=161.1	fisher_strand_p_value=0.431373	frequency=1	ks_quality_p_value=0.797186	major_base=C	major_cov=21/29	major_frequency=9.804e-01	minor_base=T	minor_cov=1/0	new_cov=21/29	polymorphism_frequency=9.804e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=23/29
RA	1813	.	NC_000913	4628560	0	T	G	bias_e_value=3414390	bias_p_value=0.735598	consensus_score=159.8	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.8405	major_base=G	major_cov=20/27	major_frequency=9.792e-01	minor_base=T	minor_cov=1/0	new_cov=20/27	polymorphism_frequency=9.792e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=21/27
RA	1814	.	NC_000913	4628583	0	G	A	bias_e_value=3705770	bias_p_value=0.798372	consensus_score=128.0	fisher_strand_p_value=0.463415	frequency=1	ks_quality_p_value=0.941994	major_base=A	major_cov=18/22	major_frequency=9.756e-01	minor_base=G	minor_cov=1/0	new_cov=18/22	polymorphism_frequency=9.756e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=19/23
RA	1815	.	NC_000913	4628592	0	T	.	bias_e_value=4641650	bias_p_value=1	consensus_score=158.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=17/21	major_frequency=9.268e-01	minor_base=T	minor_cov=1/2	new_cov=17/21	polymorphism_frequency=9.268e-01	polymorphism_score=5.5	prediction=consensus	ref_cov=1/2	total_cov=18/23
RA	1816	.	NC_000913	4628668	0	C	T	bias_e_value=4638470	bias_p_value=0.999314	consensus_score=79.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.963194	major_base=T	major_cov=13/17	major_frequency=9.375e-01	minor_base=C	minor_cov=1/1	new_cov=13/17	polymorphism_frequency=9.375e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/1	total_cov=14/18
RA	1817	.	NC_000913	4628678	0	A	C	bias_e_value=3617390	bias_p_value=0.779332	consensus_score=85.2	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.911373	major_base=C	major_cov=14/18	major_frequency=9.697e-01	minor_base=A	minor_cov=1/0	new_cov=14/18	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/18
RA	1818	.	NC_000913	4628683	0	G	A	bias_e_value=2546980	bias_p_value=0.548722	consensus_score=67.2	fisher_strand_p_value=0.224138	frequency=1	ks_quality_p_value=0.968671	major_base=A	major_cov=14/12	major_frequency=8.966e-01	minor_base=C	minor_cov=0/3	new_cov=14/12	polymorphism_frequency=8.966e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=15/16
RA	1819	.	NC_000913	4628699	0	A	G	bias_e_value=2858190	bias_p_value=0.615771	consensus_score=85.5	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.561277	major_base=G	major_cov=15/18	major_frequency=9.706e-01	minor_base=A	minor_cov=1/0	new_cov=15/18	polymorphism_frequency=9.706e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=16/18
RA	1820	.	NC_000913	4628707	0	C	A	bias_e_value=3617390	bias_p_value=0.779332	consensus_score=88.4	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.911373	major_base=A	major_cov=14/18	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=14/18	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/18
RA	1821	.	NC_000913	4628710	0	T	C	bias_e_value=4367070	bias_p_value=0.940843	consensus_score=75.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.676376	major_base=C	major_cov=14/17	major_frequency=9.394e-01	minor_base=T	minor_cov=1/1	new_cov=14/17	polymorphism_frequency=9.394e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/1	total_cov=15/18
RA	1822	.	NC_000913	4628721	0	C	T	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=98.3	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/18	major_frequency=9.706e-01	minor_base=C	minor_cov=1/0	new_cov=15/18	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=16/18
RA	1823	.	NC_000913	4628778	0	A	G	bias_e_value=3841260	bias_p_value=0.827563	consensus_score=137.0	fisher_strand_p_value=0.497585	frequency=1	ks_quality_p_value=0.951794	major_base=G	major_cov=20/24	major_frequency=9.565e-01	minor_base=A	minor_cov=0/2	new_cov=20/24	polymorphism_frequency=9.565e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=0/2	total_cov=20/26
RA	1824	.	NC_000913	4628779	0	C	G	bias_e_value=3841260	bias_p_value=0.827563	consensus_score=143.5	fisher_strand_p_value=0.497585	frequency=1	ks_quality_p_value=0.951794	major_base=G	major_cov=20/24	major_frequency=9.565e-01	minor_base=C	minor_cov=0/2	new_cov=20/24	polymorphism_frequency=9.565e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=0/2	total_cov=20/26
RA	1825	.	NC_000913	4628782	0	T	A	bias_e_value=3908940	bias_p_value=0.842143	consensus_score=140.9	fisher_strand_p_value=0.497585	frequency=1	ks_quality_p_value=0.992126	major_base=A	major_cov=20/24	major_frequency=9.565e-01	minor_base=T	minor_cov=0/2	new_cov=20/24	polymorphism_frequency=9.565e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/2	total_cov=20/26
RA	1826	.	NC_000913	4628785	0	T	C	bias_e_value=3713180	bias_p_value=0.79997	consensus_score=127.4	fisher_strand_p_value=0.497585	frequency=1	ks_quality_p_value=0.88119	major_base=C	major_cov=20/24	major_frequency=9.565e-01	minor_base=T	minor_cov=0/2	new_cov=20/24	polymorphism_frequency=9.565e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/2	total_cov=20/26
RA	1827	.	NC_000913	4628802	0	G	T	bias_e_value=2664670	bias_p_value=0.574078	consensus_score=127.9	fisher_strand_p_value=0.234144	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/20	major_frequency=9.318e-01	minor_base=G	minor_cov=0/3	new_cov=21/20	polymorphism_frequency=9.318e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/3	total_cov=21/23
RA	1828	.	NC_000913	4628805	0	G	T	bias_e_value=2634570	bias_p_value=0.567593	consensus_score=134.9	fisher_strand_p_value=0.236364	frequency=1	ks_quality_p_value=0.971833	major_base=T	major_cov=21/21	major_frequency=9.333e-01	minor_base=G	minor_cov=0/3	new_cov=21/21	polymorphism_frequency=9.333e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/3	total_cov=21/24
RA	1829	.	NC_000913	4628807	0	T	G	bias_e_value=1652760	bias_p_value=0.356072	consensus_score=121.9	fisher_strand_p_value=0.111487	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=21/20	major_frequency=9.111e-01	minor_base=T	minor_cov=0/4	new_cov=21/20	polymorphism_frequency=9.111e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=0/4	total_cov=21/24
RA	1830	.	NC_000913	4628831	0	G	A	bias_e_value=3887330	bias_p_value=0.837489	consensus_score=146.1	fisher_strand_p_value=0.589502	frequency=1	ks_quality_p_value=0.826349	major_base=A	major_cov=27/22	major_frequency=9.423e-01	minor_base=G	minor_cov=1/2	new_cov=27/22	polymorphism_frequency=9.423e-01	polymorphism_score=0.2	prediction=consensus	ref_cov=1/2	total_cov=28/24
RA	1831	.	NC_000913	4628897	0	C	T	bias_e_value=2595730	bias_p_value=0.559226	consensus_score=162.4	fisher_strand_p_value=0.565161	frequency=1	ks_quality_p_value=0.396462	major_base=T	major_cov=31/21	major_frequency=9.455e-01	minor_base=C	minor_cov=1/2	new_cov=31/21	polymorphism_frequency=9.455e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=1/2	total_cov=32/23
RA	1832	.	NC_000913	4628939	0	G	A	bias_e_value=4195130	bias_p_value=0.903801	consensus_score=157.8	fisher_strand_p_value=0.635478	frequency=1	ks_quality_p_value=0.935941	major_base=A	major_cov=33/20	major_frequency=9.298e-01	minor_base=G	minor_cov=2/2	new_cov=33/20	polymorphism_frequency=9.298e-01	polymorphism_score=1.9	prediction=consensus	ref_cov=2/2	total_cov=35/22
RA	1833	.	NC_000913	4628984	0	A	G	bias_e_value=4638370	bias_p_value=0.999293	consensus_score=176.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962621	major_base=G	major_cov=34/22	major_frequency=9.333e-01	minor_base=A	minor_cov=2/2	new_cov=34/22	polymorphism_frequency=9.333e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=2/2	total_cov=36/24
RA	1834	.	NC_000913	4628990	0	A	G	bias_e_value=4407510	bias_p_value=0.949556	consensus_score=194.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.699673	major_base=G	major_cov=37/23	major_frequency=9.524e-01	minor_base=A	minor_cov=2/1	new_cov=37/23	polymorphism_frequency=9.524e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/1	total_cov=39/24
RA	1835	.	NC_000913	4629188	0	G	A	bias_e_value=2716660	bias_p_value=0.585279	consensus_score=231.5	fisher_strand_p_value=0.241947	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/35	major_frequency=9.595e-01	minor_base=C	minor_cov=3/0	new_cov=36/35	polymorphism_frequency=9.595e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=39/37
RA	1836	.	NC_000913	4629281	0	G	A	bias_e_value=1269130	bias_p_value=0.273422	consensus_score=190.0	fisher_strand_p_value=0.494048	frequency=1	ks_quality_p_value=0.155065	major_base=A	major_cov=30/32	major_frequency=9.688e-01	minor_base=G	minor_cov=0/2	new_cov=30/32	polymorphism_frequency=9.688e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/2	total_cov=31/34
RA	1837	.	NC_000913	4629356	0	C	T	bias_e_value=4568230	bias_p_value=0.984182	consensus_score=223.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.82749	major_base=T	major_cov=36/35	major_frequency=9.861e-01	minor_base=C	minor_cov=0/1	new_cov=36/35	polymorphism_frequency=9.861e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=36/36
RA	1838	.	NC_000913	4629377	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=209.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/34	major_frequency=9.577e-01	minor_base=C	minor_cov=1/2	new_cov=34/34	polymorphism_frequency=9.577e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/2	total_cov=36/37
RA	1839	.	NC_000913	4629446	0	A	G	bias_e_value=4173410	bias_p_value=0.899122	consensus_score=225.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.585894	major_base=G	major_cov=39/34	major_frequency=9.865e-01	minor_base=A	minor_cov=1/0	new_cov=39/34	polymorphism_frequency=9.865e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=40/34
RA	1840	.	NC_000913	4629473	0	C	T	bias_e_value=4251840	bias_p_value=0.916018	consensus_score=234.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.619239	major_base=T	major_cov=37/34	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=37/34	polymorphism_frequency=9.861e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=38/34
RA	1841	.	NC_000913	4629476	0	T	C	bias_e_value=4453940	bias_p_value=0.959559	consensus_score=219.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.729429	major_base=C	major_cov=37/33	major_frequency=9.859e-01	minor_base=T	minor_cov=1/0	new_cov=37/33	polymorphism_frequency=9.859e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=38/34
RA	1842	.	NC_000913	4629515	0	A	G	bias_e_value=4633260	bias_p_value=0.998192	consensus_score=213.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.940465	major_base=G	major_cov=35/33	major_frequency=9.855e-01	minor_base=A	minor_cov=1/0	new_cov=35/33	polymorphism_frequency=9.855e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=36/33
RA	1843	.	NC_000913	4629521	0	G	A	bias_e_value=3908740	bias_p_value=0.842101	consensus_score=202.8	fisher_strand_p_value=0.493606	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/33	major_frequency=9.710e-01	minor_base=T	minor_cov=2/0	new_cov=34/33	polymorphism_frequency=9.710e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/0	total_cov=37/33
RA	1844	.	NC_000913	4629524	0	A	G	bias_e_value=3889570	bias_p_value=0.837972	consensus_score=215.5	fisher_strand_p_value=0.49441	frequency=1	ks_quality_p_value=0.986645	major_base=G	major_cov=35/33	major_frequency=9.714e-01	minor_base=A	minor_cov=2/0	new_cov=35/33	polymorphism_frequency=9.714e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=2/0	total_cov=37/33
RA	1845	.	NC_000913	4629635	0	T	C	bias_e_value=3889570	bias_p_value=0.837972	consensus_score=229.8	fisher_strand_p_value=0.49441	frequency=1	ks_quality_p_value=0.986645	major_base=C	major_cov=35/33	major_frequency=9.714e-01	minor_base=A	minor_cov=2/0	new_cov=35/33	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=37/34
RA	1846	.	NC_000913	4629647	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=218.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/32	major_frequency=9.722e-01	minor_base=C	minor_cov=1/1	new_cov=38/32	polymorphism_frequency=9.722e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/1	total_cov=39/33
RA	1847	.	NC_000913	4629674	0	A	G	bias_e_value=4596610	bias_p_value=0.990296	consensus_score=214.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.863963	major_base=G	major_cov=33/34	major_frequency=9.710e-01	minor_base=A	minor_cov=1/1	new_cov=33/34	polymorphism_frequency=9.710e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/1	total_cov=34/35
RA	1848	.	NC_000913	4629686	0	A	T	bias_e_value=4591670	bias_p_value=0.989232	consensus_score=217.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.856887	major_base=T	major_cov=33/32	major_frequency=9.559e-01	minor_base=A	minor_cov=2/1	new_cov=33/32	polymorphism_frequency=9.559e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=2/1	total_cov=35/34
RA	1849	.	NC_000913	4629689	0	T	C	bias_e_value=4640580	bias_p_value=0.999769	consensus_score=219.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978601	major_base=C	major_cov=34/33	major_frequency=9.710e-01	minor_base=T	minor_cov=1/1	new_cov=34/33	polymorphism_frequency=9.710e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/1	total_cov=35/34
RA	1850	.	NC_000913	4629701	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=219.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/32	major_frequency=9.714e-01	minor_base=T	minor_cov=1/1	new_cov=36/32	polymorphism_frequency=9.714e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/1	total_cov=37/33
RA	1851	.	NC_000913	4629716	0	A	G	bias_e_value=4204010	bias_p_value=0.905715	consensus_score=208.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.598476	major_base=G	major_cov=36/30	major_frequency=9.706e-01	minor_base=A	minor_cov=1/1	new_cov=36/30	polymorphism_frequency=9.706e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=37/32
RA	1852	.	NC_000913	4629797	0	A	G	bias_e_value=4641610	bias_p_value=0.999992	consensus_score=215.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995938	major_base=G	major_cov=33/33	major_frequency=9.851e-01	minor_base=A	minor_cov=0/1	new_cov=33/33	polymorphism_frequency=9.851e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=33/34
RA	1853	.	NC_000913	4629887	0	A	C	bias_e_value=3536460	bias_p_value=0.761898	consensus_score=220.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.394994	major_base=C	major_cov=36/31	major_frequency=9.853e-01	minor_base=A	minor_cov=1/0	new_cov=36/31	polymorphism_frequency=9.853e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=37/31
RA	1854	.	NC_000913	4629896	0	T	C	bias_e_value=3482880	bias_p_value=0.750353	consensus_score=199.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.382771	major_base=C	major_cov=33/30	major_frequency=9.844e-01	minor_base=T	minor_cov=1/0	new_cov=33/30	polymorphism_frequency=9.844e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=35/30
RA	1855	.	NC_000913	4630022	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=191.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=27/36	major_frequency=9.692e-01	minor_base=A	minor_cov=1/1	new_cov=27/36	polymorphism_frequency=9.692e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/38
RA	1856	.	NC_000913	4630106	0	A	G	bias_e_value=3988080	bias_p_value=0.859193	consensus_score=192.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.518705	major_base=G	major_cov=26/35	major_frequency=9.531e-01	minor_base=A	minor_cov=1/2	new_cov=26/35	polymorphism_frequency=9.531e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=1/2	total_cov=27/37
RA	1857	.	NC_000913	4630238	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=147.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/17	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=30/17	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/18
RA	1858	.	NC_000913	4630304	0	A	G	bias_e_value=1351940	bias_p_value=0.291263	consensus_score=90.3	fisher_strand_p_value=0.084197	frequency=1	ks_quality_p_value=0.993827	major_base=G	major_cov=25/9	major_frequency=8.947e-01	minor_base=A	minor_cov=1/3	new_cov=25/9	polymorphism_frequency=8.947e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=1/3	total_cov=26/12
RA	1859	.	NC_000913	4630385	0	G	A	bias_e_value=3058200	bias_p_value=0.65886	consensus_score=69.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.298068	major_base=A	major_cov=17/9	major_frequency=8.966e-01	minor_base=G	minor_cov=2/1	new_cov=17/9	polymorphism_frequency=8.966e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=2/1	total_cov=20/10
RA	1860	.	NC_000913	4630400	0	A	G	bias_e_value=1408510	bias_p_value=0.30345	consensus_score=63.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0886484	major_base=G	major_cov=16/10	major_frequency=9.286e-01	minor_base=A	minor_cov=1/1	new_cov=16/10	polymorphism_frequency=9.286e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/1	total_cov=19/11
RA	1861	.	NC_000913	4630553	0	A	G	consensus_score=129.0	frequency=1	major_base=G	major_cov=22/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/18
RA	1862	.	NC_000913	4630602	0	C	T	consensus_score=124.5	frequency=1	major_base=T	major_cov=23/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/17
RA	1863	.	NC_000913	4630603	0	C	T	consensus_score=131.9	frequency=1	major_base=T	major_cov=23/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/17
RA	1864	.	NC_000913	4630615	0	C	T	bias_e_value=4640780	bias_p_value=0.999813	consensus_score=131.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980708	major_base=T	major_cov=25/17	major_frequency=9.545e-01	minor_base=A	minor_cov=1/1	new_cov=25/17	polymorphism_frequency=9.545e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	1865	.	NC_000913	4630837	0	T	C	bias_e_value=3031900	bias_p_value=0.653195	consensus_score=166.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.293418	major_base=C	major_cov=26/29	major_frequency=9.649e-01	minor_base=T	minor_cov=1/1	new_cov=26/29	polymorphism_frequency=9.649e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=27/31
RA	1866	.	NC_000913	4630912	0	G	A	bias_e_value=4347100	bias_p_value=0.936541	consensus_score=182.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.665593	major_base=A	major_cov=24/33	major_frequency=9.661e-01	minor_base=G	minor_cov=1/1	new_cov=24/33	polymorphism_frequency=9.661e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=25/34
RA	1867	.	NC_000913	4630921	0	G	A	bias_e_value=3804480	bias_p_value=0.819639	consensus_score=161.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.46315	major_base=A	major_cov=23/33	major_frequency=9.655e-01	minor_base=G	minor_cov=1/1	new_cov=23/33	polymorphism_frequency=9.655e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=25/34
RA	1868	.	NC_000913	4630945	0	C	T	bias_e_value=4067950	bias_p_value=0.876401	consensus_score=154.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.545995	major_base=T	major_cov=22/31	major_frequency=9.636e-01	minor_base=C	minor_cov=1/1	new_cov=22/31	polymorphism_frequency=9.636e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=23/32
RA	1869	.	NC_000913	4630960	0	T	C	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=178.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997209	major_base=C	major_cov=23/30	major_frequency=9.815e-01	minor_base=T	minor_cov=0/1	new_cov=23/30	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=23/31
RA	1870	.	NC_000913	4630984	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=179.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/31	major_frequency=9.821e-01	minor_base=G	minor_cov=0/1	new_cov=24/31	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/32
RA	1871	.	NC_000913	4631146	0	G	A	bias_e_value=1997900	bias_p_value=0.430428	consensus_score=140.1	fisher_strand_p_value=0.147826	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/28	major_frequency=9.565e-01	minor_base=C	minor_cov=2/0	new_cov=16/28	polymorphism_frequency=9.565e-01	polymorphism_score=-7.8	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	1872	.	NC_000913	4631245	0	C	T	bias_e_value=2449420	bias_p_value=0.527704	consensus_score=176.3	fisher_strand_p_value=0.203634	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/24	major_frequency=9.649e-01	minor_base=G	minor_cov=0/2	new_cov=31/24	polymorphism_frequency=9.649e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	1873	.	NC_000913	4631323	0	A	T	bias_e_value=3409500	bias_p_value=0.734544	consensus_score=193.2	fisher_strand_p_value=0.366667	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/21	major_frequency=9.833e-01	minor_base=C	minor_cov=0/1	new_cov=38/21	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/22
RA	1874	.	NC_000913	4634882	0	C	T	consensus_score=167.9	frequency=1	major_base=T	major_cov=17/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/35
RA	1875	.	NC_000913	4635658	0	T	C	consensus_score=96.6	frequency=1	major_base=C	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	1876	.	NC_000913	4635706	0	C	A	bias_e_value=3767030	bias_p_value=0.81157	consensus_score=100.7	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.932273	major_base=A	major_cov=16/17	major_frequency=9.429e-01	minor_base=C	minor_cov=2/0	new_cov=16/17	polymorphism_frequency=9.429e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=2/0	total_cov=18/17
RA	1877	.	NC_000913	4635757	0	C	T	bias_e_value=4476440	bias_p_value=0.964407	consensus_score=64.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.745341	major_base=T	major_cov=12/11	major_frequency=9.200e-01	minor_base=C	minor_cov=1/1	new_cov=12/11	polymorphism_frequency=9.200e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/1	total_cov=13/12
RA	1878	.	NC_000913	4635889	0	T	C	bias_e_value=3413820	bias_p_value=0.735475	consensus_score=103.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.367595	major_base=C	major_cov=22/13	major_frequency=9.459e-01	minor_base=T	minor_cov=1/1	new_cov=22/13	polymorphism_frequency=9.459e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=23/14
RA	1879	.	NC_000913	4636139	0	A	C	bias_e_value=3555600	bias_p_value=0.766021	consensus_score=158.2	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.832208	major_base=C	major_cov=23/26	major_frequency=9.800e-01	minor_base=A	minor_cov=1/0	new_cov=23/26	polymorphism_frequency=9.800e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=24/26
RA	1880	.	NC_000913	4636146	0	T	C	bias_e_value=4622720	bias_p_value=0.99592	consensus_score=117.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.911043	major_base=C	major_cov=21/23	major_frequency=9.362e-01	minor_base=T	minor_cov=1/2	new_cov=21/23	polymorphism_frequency=9.362e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/2	total_cov=22/25
RA	1881	.	NC_000913	4636147	0	A	T	bias_e_value=1520630	bias_p_value=0.327605	consensus_score=135.3	fisher_strand_p_value=0.468085	frequency=1	ks_quality_p_value=0.211181	major_base=T	major_cov=21/25	major_frequency=9.787e-01	minor_base=A	minor_cov=1/0	new_cov=21/25	polymorphism_frequency=9.787e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=22/25
RA	1882	.	NC_000913	4636175	0	C	T	bias_e_value=3268470	bias_p_value=0.704161	consensus_score=152.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.337566	major_base=T	major_cov=23/24	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=23/24	polymorphism_frequency=9.792e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=24/24
RA	1883	.	NC_000913	4636180	0	G	T	bias_e_value=3940130	bias_p_value=0.848863	consensus_score=160.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.503319	major_base=T	major_cov=24/25	major_frequency=9.800e-01	minor_base=G	minor_cov=1/0	new_cov=24/25	polymorphism_frequency=9.800e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=25/25
RA	1884	.	NC_000913	4636186	0	T	C	bias_e_value=4470490	bias_p_value=0.963125	consensus_score=144.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.741024	major_base=C	major_cov=23/23	major_frequency=9.787e-01	minor_base=T	minor_cov=1/0	new_cov=23/23	polymorphism_frequency=9.787e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=24/23
RA	1885	.	NC_000913	4636201	0	G	A	bias_e_value=3433450	bias_p_value=0.739704	consensus_score=147.6	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.759185	major_base=A	major_cov=23/25	major_frequency=9.796e-01	minor_base=G	minor_cov=1/0	new_cov=23/25	polymorphism_frequency=9.796e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=24/25
RA	1886	.	NC_000913	4636309	0	C	T	bias_e_value=3816980	bias_p_value=0.822332	consensus_score=142.8	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/24	major_frequency=9.778e-01	minor_base=G	minor_cov=1/0	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	1887	.	NC_000913	4636385	0	A	T	bias_e_value=2296500	bias_p_value=0.494759	consensus_score=133.7	fisher_strand_p_value=0.183575	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/18	major_frequency=9.565e-01	minor_base=C	minor_cov=0/2	new_cov=26/18	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/20
RA	1888	.	NC_000913	4636411	0	A	T	bias_e_value=3404330	bias_p_value=0.73343	consensus_score=128.7	fisher_strand_p_value=0.372093	frequency=1	ks_quality_p_value=0.982437	major_base=T	major_cov=27/15	major_frequency=9.767e-01	minor_base=G	minor_cov=0/1	new_cov=27/15	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1889	.	NC_000913	4636466	0	G	A	bias_e_value=3491080	bias_p_value=0.75212	consensus_score=118.2	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/14	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=24/14	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/15
RA	1890	.	NC_000913	4636474	0	T	G	consensus_score=121.2	frequency=1	major_base=G	major_cov=25/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/15
RA	1891	.	NC_000913	4636493	0	T	C	consensus_score=136.2	frequency=1	major_base=C	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1892	.	NC_000913	4636513	0	A	G	consensus_score=135.3	frequency=1	major_base=G	major_cov=28/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/15
RA	1893	.	NC_000913	4636516	0	G	A	bias_e_value=4599890	bias_p_value=0.991003	consensus_score=122.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.868894	major_base=A	major_cov=26/15	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=26/15	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/15
RA	1894	.	NC_000913	4636543	0	G	A	consensus_score=134.8	frequency=1	major_base=A	major_cov=27/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/15
RA	1895	.	NC_000913	4636555	0	A	G	consensus_score=123.4	frequency=1	major_base=G	major_cov=26/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/15
RA	1896	.	NC_000913	4636591	0	C	T	consensus_score=140.1	frequency=1	major_base=T	major_cov=26/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	1897	.	NC_000913	4636610	0	C	T	bias_e_value=4640430	bias_p_value=0.999737	consensus_score=142.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977139	major_base=T	major_cov=27/19	major_frequency=9.787e-01	minor_base=G	minor_cov=1/0	new_cov=27/19	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/19
RA	1898	.	NC_000913	4636717	0	T	C	consensus_score=153.8	frequency=1	major_base=C	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	1899	.	NC_000913	4636749	0	A	G	consensus_score=134.1	frequency=1	major_base=G	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	1900	.	NC_000913	4636767	0	C	T	consensus_score=146.7	frequency=1	major_base=T	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	1901	.	NC_000913	4636821	0	G	A	consensus_score=187.4	frequency=1	major_base=A	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	1902	.	NC_000913	4636827	0	C	T	bias_e_value=3756620	bias_p_value=0.809328	consensus_score=182.2	fisher_strand_p_value=0.45	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/26	major_frequency=9.833e-01	minor_base=A	minor_cov=0/1	new_cov=33/26	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	1903	.	NC_000913	4636993	0	G	T	bias_e_value=2197330	bias_p_value=0.473393	consensus_score=169.9	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=0.356141	major_base=T	major_cov=24/27	major_frequency=9.808e-01	minor_base=G	minor_cov=1/0	new_cov=24/27	polymorphism_frequency=9.808e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=26/27
RA	1904	.	NC_000913	4637001	0	C	T	bias_e_value=2508980	bias_p_value=0.540536	consensus_score=137.4	fisher_strand_p_value=0.215136	frequency=1	ks_quality_p_value=0.98449	major_base=T	major_cov=21/26	major_frequency=9.592e-01	minor_base=C	minor_cov=2/0	new_cov=21/26	polymorphism_frequency=9.592e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=2/0	total_cov=24/26
RA	1905	.	NC_000913	4637037	0	A	G	bias_e_value=3880520	bias_p_value=0.836021	consensus_score=167.9	fisher_strand_p_value=0.490909	frequency=1	ks_quality_p_value=0.988166	major_base=G	major_cov=26/28	major_frequency=9.643e-01	minor_base=A	minor_cov=2/0	new_cov=26/28	polymorphism_frequency=9.643e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=2/0	total_cov=28/28
RA	1906	.	NC_000913	4637133	0	T	G	bias_e_value=4631940	bias_p_value=0.997908	consensus_score=157.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.936016	major_base=G	major_cov=26/23	major_frequency=9.800e-01	minor_base=T	minor_cov=1/0	new_cov=26/23	polymorphism_frequency=9.800e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=27/23
RA	1907	.	NC_000913	4637151	0	A	G	bias_e_value=3906950	bias_p_value=0.841716	consensus_score=141.4	fisher_strand_p_value=0.493061	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=25/23	major_frequency=9.600e-01	minor_base=A	minor_cov=2/0	new_cov=25/23	polymorphism_frequency=9.600e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=2/0	total_cov=27/23
RA	1908	.	NC_000913	4637269	0	T	C	bias_e_value=4538750	bias_p_value=0.977831	consensus_score=142.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.79696	major_base=C	major_cov=23/24	major_frequency=9.792e-01	minor_base=T	minor_cov=1/0	new_cov=23/24	polymorphism_frequency=9.792e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=24/24
RA	1909	.	NC_000913	4637322	0	T	C	bias_e_value=3701350	bias_p_value=0.797421	consensus_score=169.3	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.904269	major_base=C	major_cov=25/28	major_frequency=9.815e-01	minor_base=T	minor_cov=1/0	new_cov=25/28	polymorphism_frequency=9.815e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=26/28
RA	1910	.	NC_000913	4637346	0	T	C	bias_e_value=2491790	bias_p_value=0.536832	consensus_score=175.2	fisher_strand_p_value=0.227922	frequency=1	ks_quality_p_value=0.918828	major_base=C	major_cov=25/29	major_frequency=9.643e-01	minor_base=T	minor_cov=2/0	new_cov=25/29	polymorphism_frequency=9.643e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=2/0	total_cov=27/29
RA	1911	.	NC_000913	4637379	0	C	T	bias_e_value=4231950	bias_p_value=0.911735	consensus_score=152.4	fisher_strand_p_value=0.610433	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/26	major_frequency=9.434e-01	minor_base=C	minor_cov=2/1	new_cov=24/26	polymorphism_frequency=9.434e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=2/1	total_cov=26/27
RA	1912	.	NC_000913	4637382	0	C	T	bias_e_value=4633920	bias_p_value=0.998334	consensus_score=147.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.94283	major_base=T	major_cov=24/25	major_frequency=9.423e-01	minor_base=C	minor_cov=2/1	new_cov=24/25	polymorphism_frequency=9.423e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/1	total_cov=26/27
RA	1913	.	NC_000913	4637385	0	T	A	bias_e_value=4231950	bias_p_value=0.911735	consensus_score=162.8	fisher_strand_p_value=0.610433	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/26	major_frequency=9.434e-01	minor_base=T	minor_cov=2/1	new_cov=24/26	polymorphism_frequency=9.434e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=2/1	total_cov=26/27
RA	1914	.	NC_000913	4637391	0	T	C	bias_e_value=4595570	bias_p_value=0.990073	consensus_score=161.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.862445	major_base=C	major_cov=25/26	major_frequency=9.623e-01	minor_base=T	minor_cov=1/1	new_cov=25/26	polymorphism_frequency=9.623e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=26/27
RA	1915	.	NC_000913	4637409	0	A	G	bias_e_value=4633620	bias_p_value=0.99827	consensus_score=154.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.941765	major_base=G	major_cov=22/26	major_frequency=9.600e-01	minor_base=A	minor_cov=1/1	new_cov=22/26	polymorphism_frequency=9.600e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/1	total_cov=23/27
RA	1916	.	NC_000913	4637412	0	C	T	bias_e_value=4322110	bias_p_value=0.931158	consensus_score=154.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.652681	major_base=T	major_cov=22/26	major_frequency=9.600e-01	minor_base=C	minor_cov=1/1	new_cov=22/26	polymorphism_frequency=9.600e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=23/27
RA	1917	.	NC_000913	4637478	0	C	T	bias_e_value=4635860	bias_p_value=0.998753	consensus_score=124.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.950475	major_base=T	major_cov=20/22	major_frequency=9.333e-01	minor_base=C	minor_cov=1/2	new_cov=20/22	polymorphism_frequency=9.333e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/2	total_cov=21/24
RA	1918	.	NC_000913	4637481	0	A	G	bias_e_value=4613550	bias_p_value=0.993946	consensus_score=123.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.892003	major_base=G	major_cov=20/22	major_frequency=9.333e-01	minor_base=A	minor_cov=1/2	new_cov=20/22	polymorphism_frequency=9.333e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/2	total_cov=21/24
RA	1919	.	NC_000913	4637487	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=138.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=21/22	major_frequency=9.348e-01	minor_base=T	minor_cov=1/2	new_cov=21/22	polymorphism_frequency=9.348e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/2	total_cov=22/24
RA	1920	.	NC_000913	4637523	0	A	C	bias_e_value=4255410	bias_p_value=0.916788	consensus_score=122.9	fisher_strand_p_value=0.620851	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=21/25	major_frequency=9.200e-01	minor_base=A	minor_cov=1/3	new_cov=21/25	polymorphism_frequency=9.200e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=1/3	total_cov=22/28
RA	1921	.	NC_000913	4637553	0	G	A	bias_e_value=4525420	bias_p_value=0.974959	consensus_score=122.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.784723	major_base=A	major_cov=18/26	major_frequency=9.167e-01	minor_base=G	minor_cov=1/3	new_cov=18/26	polymorphism_frequency=9.167e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=1/3	total_cov=19/29
RA	1922	.	NC_000913	4637577	0	T	C	bias_e_value=2101710	bias_p_value=0.452794	consensus_score=122.3	fisher_strand_p_value=0.257928	frequency=1	ks_quality_p_value=0.619442	major_base=C	major_cov=18/23	major_frequency=9.318e-01	minor_base=T	minor_cov=0/3	new_cov=18/23	polymorphism_frequency=9.318e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=0/3	total_cov=19/26
RA	1923	.	NC_000913	4637675	0	C	T	bias_e_value=1366580	bias_p_value=0.294417	consensus_score=149.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0849527	major_base=T	major_cov=21/29	major_frequency=9.434e-01	minor_base=C	minor_cov=1/2	new_cov=21/29	polymorphism_frequency=9.434e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/2	total_cov=22/31
RA	1924	.	NC_000913	4637697	0	C	T	bias_e_value=1934290	bias_p_value=0.416724	consensus_score=157.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.140748	major_base=T	major_cov=22/27	major_frequency=9.608e-01	minor_base=C	minor_cov=1/1	new_cov=22/27	polymorphism_frequency=9.608e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=23/28
RA	1925	.	NC_000913	4637742	0	A	C	bias_e_value=2751220	bias_p_value=0.592725	consensus_score=136.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.247235	major_base=C	major_cov=21/22	major_frequency=9.556e-01	minor_base=A	minor_cov=1/1	new_cov=21/22	polymorphism_frequency=9.556e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/1	total_cov=22/23
RA	1926	.	NC_000913	4637751	0	G	A	bias_e_value=4641090	bias_p_value=0.999879	consensus_score=109.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.984487	major_base=A	major_cov=21/18	major_frequency=9.512e-01	minor_base=G	minor_cov=1/1	new_cov=21/18	polymorphism_frequency=9.512e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/1	total_cov=22/19
RA	1927	.	NC_000913	4637759	0	C	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=119.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997502	major_base=T	major_cov=20/19	major_frequency=9.512e-01	minor_base=C	minor_cov=1/1	new_cov=20/19	polymorphism_frequency=9.512e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/1	total_cov=21/20
RA	1928	.	NC_000913	4637766	0	C	T	bias_e_value=4623340	bias_p_value=0.996054	consensus_score=112.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.912493	major_base=T	major_cov=20/19	major_frequency=9.286e-01	minor_base=C	minor_cov=2/1	new_cov=20/19	polymorphism_frequency=9.286e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=2/1	total_cov=22/20
RA	1929	.	NC_000913	4637775	0	C	T	bias_e_value=4300480	bias_p_value=0.926497	consensus_score=111.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.641964	major_base=T	major_cov=20/19	major_frequency=9.286e-01	minor_base=C	minor_cov=2/1	new_cov=20/19	polymorphism_frequency=9.286e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=2/1	total_cov=22/20
RA	1930	.	NC_000913	4637814	0	A	G	bias_e_value=3905440	bias_p_value=0.84139	consensus_score=137.5	fisher_strand_p_value=0.4926	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=22/20	major_frequency=9.545e-01	minor_base=A	minor_cov=2/0	new_cov=22/20	polymorphism_frequency=9.545e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=2/0	total_cov=24/20
RA	1931	.	NC_000913	4637857	0	T	C	bias_e_value=1809230	bias_p_value=0.389781	consensus_score=121.3	fisher_strand_p_value=0.4926	frequency=1	ks_quality_p_value=0.258512	major_base=C	major_cov=22/20	major_frequency=9.545e-01	minor_base=T	minor_cov=2/0	new_cov=22/20	polymorphism_frequency=9.545e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=2/0	total_cov=25/20
RA	1932	.	NC_000913	4637862	0	C	A	bias_e_value=3399480	bias_p_value=0.732385	consensus_score=138.2	fisher_strand_p_value=0.490909	frequency=1	ks_quality_p_value=0.742543	major_base=A	major_cov=22/21	major_frequency=9.556e-01	minor_base=C	minor_cov=2/0	new_cov=22/21	polymorphism_frequency=9.556e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/0	total_cov=25/21
RA	1933	.	NC_000913	4637896	0	A	G	bias_e_value=4633750	bias_p_value=0.998297	consensus_score=116.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.942213	major_base=G	major_cov=20/20	major_frequency=9.524e-01	minor_base=A	minor_cov=1/1	new_cov=20/20	polymorphism_frequency=9.524e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=23/21
RA	1934	.	NC_000913	4637898	0	G	C	bias_e_value=4641480	bias_p_value=0.999963	consensus_score=130.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991379	major_base=C	major_cov=22/20	major_frequency=9.545e-01	minor_base=G	minor_cov=1/1	new_cov=22/20	polymorphism_frequency=9.545e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/1	total_cov=23/21
RA	1935	.	NC_000913	4637943	0	T	G	bias_e_value=4397390	bias_p_value=0.947375	consensus_score=121.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.693641	major_base=G	major_cov=22/20	major_frequency=9.545e-01	minor_base=T	minor_cov=1/1	new_cov=22/20	polymorphism_frequency=9.545e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=1/1	total_cov=23/21
RA	1936	.	NC_000913	4637976	0	T	G	bias_e_value=4151390	bias_p_value=0.894377	consensus_score=153.2	fisher_strand_p_value=0.589502	frequency=1	ks_quality_p_value=0.97903	major_base=G	major_cov=27/22	major_frequency=9.423e-01	minor_base=T	minor_cov=1/2	new_cov=27/22	polymorphism_frequency=9.423e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/2	total_cov=28/24
RA	1937	.	NC_000913	4638142	0	T	C	bias_e_value=4615670	bias_p_value=0.994401	consensus_score=165.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.896067	major_base=C	major_cov=26/29	major_frequency=9.821e-01	minor_base=T	minor_cov=0/1	new_cov=26/29	polymorphism_frequency=9.821e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=26/30
RA	1938	.	NC_000913	4638210	0	T	C	bias_e_value=4059720	bias_p_value=0.874628	consensus_score=151.4	fisher_strand_p_value=0.543077	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=18/31	major_frequency=9.423e-01	minor_base=.	minor_cov=0/3	new_cov=18/31	polymorphism_frequency=9.423e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=0/1	total_cov=19/35
RA	1939	.	NC_000913	4638212	0	G	C	bias_e_value=3989530	bias_p_value=0.859507	consensus_score=149.2	fisher_strand_p_value=0.519184	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=19/29	major_frequency=9.600e-01	minor_base=T	minor_cov=0/2	new_cov=19/29	polymorphism_frequency=9.600e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/2	total_cov=19/35
RA	1940	.	NC_000913	4638214	0	C	T	bias_e_value=1990420	bias_p_value=0.428816	consensus_score=149.0	fisher_strand_p_value=0.149223	frequency=1	ks_quality_p_value=0.984997	major_base=T	major_cov=19/30	major_frequency=9.074e-01	minor_base=C	minor_cov=0/5	new_cov=19/30	polymorphism_frequency=9.074e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=0/5	total_cov=19/35
RA	1941	.	NC_000913	4638264	0	G	A	bias_e_value=4436600	bias_p_value=0.955823	consensus_score=175.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.717879	major_base=A	major_cov=24/32	major_frequency=9.825e-01	minor_base=G	minor_cov=0/1	new_cov=24/32	polymorphism_frequency=9.825e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=24/34
RA	1942	.	NC_000913	4638282	0	T	C	bias_e_value=4156630	bias_p_value=0.895507	consensus_score=172.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.579202	major_base=C	major_cov=21/34	major_frequency=9.821e-01	minor_base=T	minor_cov=0/1	new_cov=21/34	polymorphism_frequency=9.821e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=22/35
RA	1943	.	NC_000913	4638354	0	C	T	consensus_score=180.4	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1944	.	NC_000913	4638532	0	T	C	bias_e_value=3831120	bias_p_value=0.825379	consensus_score=164.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.470687	major_base=C	major_cov=32/20	major_frequency=9.630e-01	minor_base=T	minor_cov=1/1	new_cov=32/20	polymorphism_frequency=9.630e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/1	total_cov=35/21
RA	1945	.	NC_000913	4638567	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=156.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=31/19	major_frequency=9.804e-01	minor_base=T	minor_cov=1/0	new_cov=31/19	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/19
RA	1946	.	NC_000913	4638587	0	C	T	consensus_score=159.1	frequency=1	major_base=T	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	1947	.	NC_000913	4638600	0	A	C	consensus_score=167.9	frequency=1	major_base=C	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	1948	.	NC_000913	4638735	0	T	C	consensus_score=116.7	frequency=1	major_base=C	major_cov=11/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/25
RA	1949	.	NC_000913	4638818	0	G	C	bias_e_value=3010630	bias_p_value=0.648611	consensus_score=94.2	fisher_strand_p_value=0.290323	frequency=1	ks_quality_p_value=0.997852	major_base=C	major_cov=8/22	major_frequency=9.677e-01	minor_base=.	minor_cov=1/0	new_cov=8/22	polymorphism_frequency=9.677e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=9/22
RA	1950	.	NC_000913	4638883	0	C	T	consensus_score=78.4	frequency=1	major_base=T	major_cov=8/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/17
RA	1951	.	NC_000913	4638885	0	A	G	consensus_score=71.4	frequency=1	major_base=G	major_cov=8/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/17
RA	1952	.	NC_000913	4638927	0	C	A	bias_e_value=3759000	bias_p_value=0.809841	consensus_score=98.7	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.997852	major_base=A	major_cov=13/17	major_frequency=9.677e-01	minor_base=C	minor_cov=1/0	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=14/18
RA	1953	.	NC_000913	4639005	0	G	C	consensus_score=124.0	frequency=1	major_base=C	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	1954	.	NC_000913	4639023	0	A	G	consensus_score=116.1	frequency=1	major_base=G	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1955	.	NC_000913	4639053	0	T	G	consensus_score=142.2	frequency=1	major_base=G	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	1956	.	NC_000913	4639217	0	C	T	consensus_score=135.9	frequency=1	major_base=T	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	1957	.	NC_000913	4639261	0	A	T	bias_e_value=2741730	bias_p_value=0.59068	consensus_score=131.1	fisher_strand_p_value=0.465116	frequency=1	ks_quality_p_value=0.528415	major_base=T	major_cov=19/23	major_frequency=9.767e-01	minor_base=A	minor_cov=1/0	new_cov=19/23	polymorphism_frequency=9.767e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=20/23
RA	1958	.	NC_000913	4639284	0	A	G	bias_e_value=3150960	bias_p_value=0.678845	consensus_score=112.6	fisher_strand_p_value=0.564676	frequency=1	ks_quality_p_value=0.557784	major_base=G	major_cov=15/22	major_frequency=9.250e-01	minor_base=A	minor_cov=2/1	new_cov=15/22	polymorphism_frequency=9.250e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=2/1	total_cov=17/23
RA	1959	.	NC_000913	4639299	0	T	C	bias_e_value=915499	bias_p_value=0.197236	consensus_score=92.3	fisher_strand_p_value=0.57915	frequency=1	ks_quality_p_value=0.0848673	major_base=C	major_cov=16/21	major_frequency=9.250e-01	minor_base=T	minor_cov=2/1	new_cov=16/21	polymorphism_frequency=9.250e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=2/1	total_cov=19/22
RA	1960	.	NC_000913	4639303	0	T	C	bias_e_value=3672430	bias_p_value=0.791191	consensus_score=89.7	fisher_strand_p_value=0.60499	frequency=1	ks_quality_p_value=0.707404	major_base=C	major_cov=17/19	major_frequency=9.231e-01	minor_base=T	minor_cov=2/1	new_cov=17/19	polymorphism_frequency=9.231e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=2/1	total_cov=19/21
RA	1961	.	NC_000913	4639440	0	C	T	bias_e_value=4607080	bias_p_value=0.992551	consensus_score=68.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.880451	major_base=T	major_cov=13/13	major_frequency=8.966e-01	minor_base=C	minor_cov=2/1	new_cov=13/13	polymorphism_frequency=8.966e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=2/1	total_cov=15/14
RA	1962	.	NC_000913	4639502	0	C	T	bias_e_value=4483940	bias_p_value=0.966022	consensus_score=67.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.750908	major_base=T	major_cov=13/13	major_frequency=8.966e-01	minor_base=C	minor_cov=1/2	new_cov=13/13	polymorphism_frequency=8.966e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=1/2	total_cov=14/15
RA	1963	.	NC_000913	4639510	0	G	C	bias_e_value=3837410	bias_p_value=0.826733	consensus_score=72.1	fisher_strand_p_value=0.595556	frequency=1	ks_quality_p_value=0.793357	major_base=C	major_cov=13/11	major_frequency=8.889e-01	minor_base=G	minor_cov=1/2	new_cov=13/11	polymorphism_frequency=8.889e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=1/2	total_cov=14/13
RA	1964	.	NC_000913	4639512	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=59.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/11	major_frequency=8.462e-01	minor_base=G	minor_cov=2/2	new_cov=11/11	polymorphism_frequency=8.462e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/2	total_cov=14/13
RA	1965	.	NC_000913	4639608	0	G	A	bias_e_value=2161680	bias_p_value=0.465714	consensus_score=87.1	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.367183	major_base=A	major_cov=18/14	major_frequency=9.697e-01	minor_base=G	minor_cov=0/1	new_cov=18/14	polymorphism_frequency=9.697e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=18/15
RA	1966	.	NC_000913	4639632	0	A	G	bias_e_value=2815280	bias_p_value=0.606524	consensus_score=97.9	fisher_strand_p_value=0.393939	frequency=1	ks_quality_p_value=0.653027	major_base=G	major_cov=20/12	major_frequency=9.697e-01	minor_base=A	minor_cov=0/1	new_cov=20/12	polymorphism_frequency=9.697e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=20/14
RA	1967	.	NC_000913	4639719	0	C	T	bias_e_value=2787020	bias_p_value=0.600436	consensus_score=149.6	fisher_strand_p_value=0.253394	frequency=1	ks_quality_p_value=0.997648	major_base=T	major_cov=27/22	major_frequency=9.423e-01	minor_base=G	minor_cov=3/0	new_cov=27/22	polymorphism_frequency=9.423e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/0	total_cov=31/22
RA	1968	.	NC_000913	4639764	0	G	A	bias_e_value=1809150	bias_p_value=0.389763	consensus_score=136.1	fisher_strand_p_value=0.127335	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/24	major_frequency=8.793e-01	minor_base=G	minor_cov=6/1	new_cov=27/24	polymorphism_frequency=8.793e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=6/1	total_cov=34/25
RA	1969	.	NC_000913	4639956	0	T	C	bias_e_value=1028110	bias_p_value=0.221496	consensus_score=171.6	fisher_strand_p_value=0.18584	frequency=1	ks_quality_p_value=0.308987	major_base=C	major_cov=40/21	major_frequency=9.104e-01	minor_base=T	minor_cov=2/4	new_cov=40/21	polymorphism_frequency=9.104e-01	polymorphism_score=6.9	prediction=consensus	ref_cov=2/4	total_cov=43/25
RA	1970	.	NC_000913	4640785	0	C	T	consensus_score=79.0	frequency=1	major_base=T	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	1971	.	NC_000913	4640864	0	A	G	consensus_score=111.7	frequency=1	major_base=G	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	1972	.	NC_000913	4640908	0	G	T	consensus_score=107.5	frequency=1	major_base=T	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	1973	.	NC_000913	4640924	0	A	G	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=109.3	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=20/14	major_frequency=9.714e-01	minor_base=T	minor_cov=0/1	new_cov=20/14	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	1974	.	NC_000913	4641022	0	G	T	consensus_score=80.4	frequency=1	major_base=T	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	1975	.	NC_000913	4641031	0	T	A	consensus_score=71.8	frequency=1	major_base=A	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	1976	.	NC_000913	4641131	0	T	C	consensus_score=94.4	frequency=1	major_base=C	major_cov=20/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/11
RA	1977	.	NC_000913	4641208	0	C	T	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=109.4	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/15	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=20/15	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	1978	.	NC_000913	4641217	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=113.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/17	major_frequency=9.730e-01	minor_base=C	minor_cov=1/0	new_cov=19/17	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	1979	.	NC_000913	4641226	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=125.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/19	major_frequency=9.750e-01	minor_base=G	minor_cov=0/1	new_cov=20/19	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/20
RA	1980	.	NC_000913	4641296	0	T	C	bias_e_value=2652070	bias_p_value=0.571363	consensus_score=143.9	fisher_strand_p_value=0.234043	frequency=1	ks_quality_p_value=0.992464	major_base=C	major_cov=24/21	major_frequency=9.574e-01	minor_base=A	minor_cov=0/2	new_cov=24/21	polymorphism_frequency=9.574e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	1981	.	NC_000913	4641352	0	G	A	consensus_score=148.1	frequency=1	major_base=A	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	1982	.	NC_000913	4641382	0	G	A	consensus_score=145.6	frequency=1	major_base=A	major_cov=20/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	1983	.	NC_000913	4641428	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=142.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99899	major_base=A	major_cov=20/24	major_frequency=9.778e-01	minor_base=G	minor_cov=0/1	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/25
RA	1984	.	NC_000913	4641439	0	T	C	consensus_score=136.8	frequency=1	major_base=C	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	1985	.	NC_000913	4641440	0	G	A	consensus_score=133.9	frequency=1	major_base=A	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	1986	.	NC_000913	4641483	0	C	T	consensus_score=122.7	frequency=1	major_base=T	major_cov=15/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/24
RA	1987	.	NC_000913	4641488	0	A	G	consensus_score=129.2	frequency=1	major_base=G	major_cov=16/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	1988	.	NC_000913	4641544	0	A	G	bias_e_value=3217230	bias_p_value=0.693123	consensus_score=126.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.32754	major_base=G	major_cov=21/20	major_frequency=9.762e-01	minor_base=A	minor_cov=0/1	new_cov=21/20	polymorphism_frequency=9.762e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=21/21
MC	1989	.	NC_000913	257908	258683	767	0	left_inside_cov=0	left_outside_cov=39	right_inside_cov=1	right_outside_cov=40
MC	1990	.	NC_000913	275509	278899	0	0	left_inside_cov=2	left_outside_cov=29	right_inside_cov=5	right_outside_cov=6
MC	1991	.	NC_000913	278931	282437	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	1992	.	NC_000913	282666	305509	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=4	right_outside_cov=6
MC	1993	.	NC_000913	305567	338716	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=4	right_outside_cov=6
MC	1994	.	NC_000913	338721	366902	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	1995	.	NC_000913	367009	372748	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=3	right_outside_cov=30
MC	1996	.	NC_000913	574804	579183	985	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=3	right_outside_cov=39
MC	1997	.	NC_000913	1299499	1300697	1196	0	left_inside_cov=0	left_outside_cov=25	right_inside_cov=1	right_outside_cov=25
MC	1998	.	NC_000913	1411925	1419717	0	0	left_inside_cov=0	left_outside_cov=33	right_inside_cov=4	right_outside_cov=6
MC	1999	.	NC_000913	1419745	1420476	0	0	left_inside_cov=4	left_outside_cov=6	right_inside_cov=4	right_outside_cov=6
MC	2000	.	NC_000913	1420609	1434984	0	0	left_inside_cov=4	left_outside_cov=6	right_inside_cov=2	right_outside_cov=35
MC	2001	.	NC_000913	1978711	1979278	562	0	left_inside_cov=5	left_outside_cov=7	right_inside_cov=0	right_outside_cov=17
MC	2002	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=42	right_inside_cov=2	right_outside_cov=44
MC	2003	.	NC_000913	3130355	3131468	987	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=1	right_outside_cov=40
MC	2004	.	NC_000913	3423902	3424430	330	192	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	2005	.	NC_000913	4035401	4036867	1466	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=4	right_outside_cov=6
MC	2006	.	NC_000913	4235551	4247411	0	0	left_inside_cov=0	left_outside_cov=70	right_inside_cov=5	right_outside_cov=6
MC	2007	.	NC_000913	4247567	4250982	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=2	right_outside_cov=44
MC	2008	.	NC_000913	4507457	4508685	0	0	left_inside_cov=1	left_outside_cov=43	right_inside_cov=5	right_outside_cov=7
MC	2009	.	NC_000913	4519240	4523951	0	0	left_inside_cov=0	left_outside_cov=47	right_inside_cov=5	right_outside_cov=6
MC	2010	.	NC_000913	4524491	4525971	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=0	right_outside_cov=46
MC	2011	.	NC_000913	4569765	4573425	0	0	left_inside_cov=0	left_outside_cov=43	right_inside_cov=5	right_outside_cov=6
MC	2012	.	NC_000913	4573432	4591598	0	0	left_inside_cov=5	left_outside_cov=6	right_inside_cov=5	right_outside_cov=6
MC	2013	.	NC_000913	4620828	4620870	0	0	left_inside_cov=0	left_outside_cov=38	right_inside_cov=0	right_outside_cov=37
MC	2014	.	NC_000913	4621676	4623104	0	0	left_inside_cov=5	left_outside_cov=7	right_inside_cov=4	right_outside_cov=7
JC	2015	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=239	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=247	max_left_minus=218	max_left_plus=247	max_min_left=117	max_min_left_minus=117	max_min_left_plus=116	max_min_right=121	max_min_right_minus=121	max_min_right_plus=70	max_pos_hash_score=478	max_right=246	max_right_minus=246	max_right_plus=241	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.70	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	2016	.	NC_000913	15911	-1	NC_000913	15922	1	-9	alignment_overlap=-9	coverage_minus=0	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=230	key=NC_000913__15911__-1__NC_000913__15922__1__-9__TTTTTTCAA__251__251__1__1	max_left=174	max_left_minus=0	max_left_plus=174	max_min_left=85	max_min_left_minus=0	max_min_left_plus=85	max_min_right=100	max_min_right_minus=0	max_min_right_plus=100	max_pos_hash_score=460	max_right=222	max_right_minus=0	max_right_plus=222	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.18	new_junction_read_count=8	polymorphism_frequency=NA	pos_hash_score=8	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8	unique_read_sequence=TTTTTTCAA
JC	2017	.	NC_000913	20703	-1	NC_000913	20704	1	-14	alignment_overlap=-14	coverage_minus=9	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=225	key=NC_000913__20703__-1__NC_000913__20704__1__-14__GCAAGAACCTGCAA__251__251__0__0	max_left=135	max_left_minus=134	max_left_plus=135	max_min_left=113	max_min_left_minus=77	max_min_left_plus=113	max_min_right=112	max_min_right_minus=103	max_min_right_plus=112	max_pos_hash_score=450	max_right=229	max_right_minus=229	max_right_plus=219	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.60	new_junction_read_count=26	polymorphism_frequency=9.325e-01	pos_hash_score=20	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=GCAAGAACCTGCAA
JC	2018	.	NC_000913	224140	1	NC_000913	1408753	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=7.171e-02	junction_possible_overlap_registers=238	key=NC_000913__224139__1__NC_000913__1408753__-1__1____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=122	max_min_left=122	max_min_left_minus=0	max_min_left_plus=122	max_min_right=85	max_min_right_minus=85	max_min_right_plus=0	max_pos_hash_score=476	max_right=128	max_right_minus=85	max_right_plus=128	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.07	new_junction_read_count=3	polymorphism_frequency=7.171e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=1	side_2_possible_overlap_registers=239	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	2019	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=22	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=231	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=225	max_left_minus=209	max_left_plus=225	max_min_left=108	max_min_left_minus=108	max_min_left_plus=92	max_min_right=118	max_min_right_minus=118	max_min_right_plus=97	max_pos_hash_score=462	max_right=242	max_right_minus=240	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	2020	.	NC_000913	271762	1	NC_000913	4507456	-1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=237	key=NC_000913__271762__1__NC_000913__4507458__-1__2____251__251__0__0	max_left=238	max_left_minus=236	max_left_plus=238	max_min_left=122	max_min_left_minus=122	max_min_left_plus=88	max_min_right=113	max_min_right_minus=71	max_min_right_plus=113	max_pos_hash_score=474	max_right=247	max_right_minus=247	max_right_plus=246	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=41	polymorphism_frequency=NA	pos_hash_score=35	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=37
JC	2021	.	NC_000913	273955	1	NC_000913	820914	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__273955__1__NC_000913__820914__1__0____251__251__1__0	max_left=246	max_left_minus=242	max_left_plus=246	max_min_left=98	max_min_left_minus=88	max_min_left_plus=98	max_min_right=113	max_min_right_minus=113	max_min_right_plus=100	max_pos_hash_score=478	max_right=249	max_right_minus=249	max_right_plus=247	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.61	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	2022	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__275149__-1__NC_000913__579184__1__0____251__251__1__0	max_left=240	max_left_minus=225	max_left_plus=240	max_min_left=120	max_min_left_minus=95	max_min_left_plus=120	max_min_right=125	max_min_right_minus=108	max_min_right_plus=125	max_pos_hash_score=478	max_right=248	max_right_minus=248	max_right_plus=222	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.78	new_junction_read_count=36	polymorphism_frequency=9.231e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=36
JC	2023	.	NC_000913	275149	-1	NC_000913	820917	-1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__275149__-1__NC_000913__820918__-1__1____251__251__1__0	max_left=239	max_left_minus=190	max_left_plus=239	max_min_left=119	max_min_left_minus=119	max_min_left_plus=119	max_min_right=123	max_min_right_minus=82	max_min_right_plus=123	max_pos_hash_score=476	max_right=238	max_right_minus=238	max_right_plus=221	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.77	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	2024	.	NC_000913	275508	-1	NC_000913	372749	1	0	alignment_overlap=10	coverage_minus=11	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=229	key=NC_000913__275508__-1__NC_000913__372739__1__10____251__251__0__0	max_left=210	max_left_minus=198	max_left_plus=210	max_min_left=118	max_min_left_minus=37	max_min_left_plus=118	max_min_right=108	max_min_right_minus=64	max_min_right_plus=108	max_pos_hash_score=458	max_right=240	max_right_minus=240	max_right_plus=228	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.61	new_junction_read_count=27	polymorphism_frequency=9.657e-01	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=10	side_1_possible_overlap_registers=239	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=229	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	2025	.	NC_000913	290634	1	NC_000913	1105699	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__290634__1__NC_000913__1105699__1__0____251__251__1__0	max_left=227	max_left_minus=159	max_left_plus=227	max_min_left=120	max_min_left_minus=103	max_min_left_plus=120	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=478	max_right=245	max_right_minus=231	max_right_plus=245	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=230	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	2026	.	NC_000913	291401	-1	NC_000913	1105707	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__291401__-1__NC_000913__1105707__-1__0____251__251__1__0	max_left=244	max_left_minus=242	max_left_plus=244	max_min_left=90	max_min_left_minus=9	max_min_left_plus=90	max_min_right=93	max_min_right_minus=93	max_min_right_plus=89	max_pos_hash_score=478	max_right=248	max_right_minus=241	max_right_plus=248	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.46	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=230	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	2027	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=4	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=3.031e-01	junction_possible_overlap_registers=223	key=NC_000913__1207790__1__NC_000913__1209603__1__16____251__251__0__0	max_left=208	max_left_minus=160	max_left_plus=208	max_min_left=109	max_min_left_minus=109	max_min_left_plus=101	max_min_right=82	max_min_right_minus=82	max_min_right_plus=27	max_pos_hash_score=446	max_right=179	max_right_minus=171	max_right_plus=179	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.23	new_junction_read_count=10	polymorphism_frequency=3.031e-01	pos_hash_score=10	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=16	side_1_possible_overlap_registers=239	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=10
JC	2028	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=4	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=3.297e-01	junction_possible_overlap_registers=223	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____251__251__0__0	max_left=217	max_left_minus=203	max_left_plus=217	max_min_left=113	max_min_left_minus=35	max_min_left_plus=113	max_min_right=102	max_min_right_minus=102	max_min_right_plus=18	max_pos_hash_score=446	max_right=215	max_right_minus=200	max_right_plus=215	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.28	new_junction_read_count=12	polymorphism_frequency=3.297e-01	pos_hash_score=10	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=16	side_1_possible_overlap_registers=239	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=11
JC	2029	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=15	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=190	max_left_minus=190	max_left_plus=140	max_min_left=114	max_min_left_minus=114	max_min_left_plus=104	max_min_right=104	max_min_right_minus=90	max_min_right_plus=104	max_pos_hash_score=470	max_right=245	max_right_minus=245	max_right_plus=212	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.53	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	2030	.	NC_000913	1396044	1	NC_000913	1586576	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__1396044__1__NC_000913__1586576__1__0____251__251__1__0	max_left=237	max_left_minus=191	max_left_plus=237	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=114	max_min_right_minus=104	max_min_right_plus=114	max_pos_hash_score=478	max_right=239	max_right_minus=239	max_right_plus=204	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.63	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	2031	.	NC_000913	1397238	-1	NC_000913	1586579	-1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__1397238__-1__NC_000913__1586580__-1__1____251__251__1__0	max_left=240	max_left_minus=240	max_left_plus=233	max_min_left=119	max_min_left_minus=119	max_min_left_plus=82	max_min_right=117	max_min_right_minus=112	max_min_right_plus=117	max_pos_hash_score=476	max_right=247	max_right_minus=247	max_right_plus=236	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	2032	.	NC_000913	1411924	-1	NC_000913	1434985	1	0	alignment_overlap=26	coverage_minus=9	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=NC_000913__1411924__-1__NC_000913__1434959__1__26____251__251__0__0	max_left=213	max_left_minus=213	max_left_plus=211	max_min_left=98	max_min_left_minus=98	max_min_left_plus=97	max_min_right=90	max_min_right_minus=84	max_min_right_plus=90	max_pos_hash_score=426	max_right=202	max_right_minus=202	max_right_plus=193	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	2033	.	NC_000913	1469240	-1	NC_000913	1655878	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__1469240__-1__NC_000913__1655878__-1__0____251__251__1__0	max_left=242	max_left_minus=238	max_left_plus=242	max_min_left=112	max_min_left_minus=109	max_min_left_plus=112	max_min_right=104	max_min_right_minus=104	max_min_right_plus=102	max_pos_hash_score=478	max_right=245	max_right_minus=240	max_right_plus=245	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=35	polymorphism_frequency=9.449e-01	pos_hash_score=31	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=33
JC	2034	.	NC_000913	1651548	-1	NC_000913	1655874	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__1651548__-1__NC_000913__1655874__1__0____251__251__1__0	max_left=227	max_left_minus=227	max_left_plus=226	max_min_left=115	max_min_left_minus=115	max_min_left_plus=114	max_min_right=111	max_min_right_minus=111	max_min_right_plus=96	max_pos_hash_score=478	max_right=237	max_right_minus=237	max_right_plus=205	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=39	polymorphism_frequency=9.502e-01	pos_hash_score=37	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=39
JC	2035	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=7	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=231	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0	max_left=240	max_left_minus=211	max_left_plus=240	max_min_left=115	max_min_left_minus=115	max_min_left_plus=85	max_min_right=109	max_min_right_minus=60	max_min_right_plus=109	max_pos_hash_score=462	max_right=240	max_right_minus=240	max_right_plus=177	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.34	new_junction_read_count=15	polymorphism_frequency=8.160e-01	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.15	side_1_overlap=8	side_1_possible_overlap_registers=239	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	2036	.	NC_000913	1979270	-1	NC_000913	4569764	-1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__1979270__-1__NC_000913__4569764__-1__0____251__251__1__0	max_left=243	max_left_minus=230	max_left_plus=243	max_min_left=124	max_min_left_minus=94	max_min_left_plus=124	max_min_right=123	max_min_right_minus=121	max_min_right_plus=123	max_pos_hash_score=478	max_right=245	max_right_minus=245	max_right_plus=226	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	2037	.	NC_000913	2170171	1	NC_000913	4519239	-1	-70	alignment_overlap=-70	coverage_minus=10	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=169	key=NC_000913__2170171__1__NC_000913__4519239__-1__-70__CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA__251__251__1__0	max_left=168	max_left_minus=121	max_left_plus=168	max_min_left=89	max_min_left_minus=72	max_min_left_plus=89	max_min_right=87	max_min_right_minus=87	max_min_right_plus=77	max_pos_hash_score=338	max_right=174	max_right_minus=171	max_right_plus=174	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=1.11	new_junction_read_count=36	polymorphism_frequency=NA	pos_hash_score=21	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA
JC	2038	.	NC_000913	2238374	1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__2238374__1__NC_000913__3583428__1__0____251__251__0__1	max_left=240	max_left_minus=208	max_left_plus=240	max_min_left=119	max_min_left_minus=108	max_min_left_plus=119	max_min_right=123	max_min_right_minus=98	max_min_right_plus=123	max_pos_hash_score=478	max_right=244	max_right_minus=223	max_right_plus=244	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=57	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=230	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=56
JC	2039	.	NC_000913	2238382	-1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__2238382__-1__NC_000913__3584195__-1__0____251__251__0__1	max_left=238	max_left_minus=232	max_left_plus=238	max_min_left=122	max_min_left_minus=108	max_min_left_plus=122	max_min_right=124	max_min_right_minus=116	max_min_right_plus=124	max_pos_hash_score=478	max_right=237	max_right_minus=237	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=230	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=49
JC	2040	.	NC_000913	2288919	1	NC_000913	3131469	1	0	alignment_overlap=1	coverage_minus=20	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__2288919__1__NC_000913__3131468__1__1____251__251__1__0	max_left=234	max_left_minus=213	max_left_plus=234	max_min_left=124	max_min_left_minus=109	max_min_left_plus=124	max_min_right=122	max_min_right_minus=122	max_min_right_plus=87	max_pos_hash_score=476	max_right=239	max_right_minus=239	max_right_plus=213	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	2041	.	NC_000913	2500718	-1	NC_000913	2501412	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.519e-02	junction_possible_overlap_registers=232	key=NC_000913__2500718__-1__NC_000913__2501405__1__7____251__251__0__0	max_left=71	max_left_minus=71	max_left_plus=71	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=26	max_min_right_minus=26	max_min_right_plus=26	max_pos_hash_score=464	max_right=222	max_right_minus=26	max_right_plus=222	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.07	new_junction_read_count=3	polymorphism_frequency=5.519e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=7	side_1_possible_overlap_registers=239	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	2042	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=25	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=231	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=210	max_min_left=115	max_min_left_minus=113	max_min_left_plus=115	max_min_right=120	max_min_right_minus=120	max_min_right_plus=119	max_pos_hash_score=462	max_right=237	max_right_minus=237	max_right_plus=211	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	2043	.	NC_000913	3186096	1	NC_000913	4365526	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__3186096__1__NC_000913__4365526__1__0____251__251__1__0	max_left=246	max_left_minus=245	max_left_plus=246	max_min_left=98	max_min_left_minus=98	max_min_left_plus=98	max_min_right=124	max_min_right_minus=87	max_min_right_plus=124	max_pos_hash_score=478	max_right=247	max_right_minus=239	max_right_plus=247	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=49	polymorphism_frequency=9.600e-01	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=46
JC	2044	.	NC_000913	3187426	-1	NC_000913	4365530	-1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__3187426__-1__NC_000913__4365531__-1__1____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=234	max_min_left=124	max_min_left_minus=113	max_min_left_plus=124	max_min_right=118	max_min_right_minus=105	max_min_right_plus=118	max_pos_hash_score=476	max_right=248	max_right_minus=234	max_right_plus=248	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=52	polymorphism_frequency=9.622e-01	pos_hash_score=46	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=50
JC	2045	.	NC_000913	3583428	1	NC_000913	4235550	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__3583428__1__NC_000913__4235550__-1__0____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=239	max_min_left=123	max_min_left_minus=123	max_min_left_plus=121	max_min_right=125	max_min_right_minus=124	max_min_right_plus=125	max_pos_hash_score=478	max_right=230	max_right_minus=226	max_right_plus=230	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.50	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68
JC	2046	.	NC_000913	3583428	1	NC_000913	4525972	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__3583428__1__NC_000913__4525972__1__0____251__251__1__0	max_left=249	max_left_minus=210	max_left_plus=249	max_min_left=122	max_min_left_minus=122	max_min_left_plus=109	max_min_right=124	max_min_right_minus=124	max_min_right_plus=109	max_pos_hash_score=478	max_right=247	max_right_minus=224	max_right_plus=247	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	2047	.	NC_000913	3583428	1	NC_000913	4541425	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__3583428__1__NC_000913__4541425__1__0____251__251__1__0	max_left=248	max_left_minus=248	max_left_plus=234	max_min_left=111	max_min_left_minus=111	max_min_left_plus=109	max_min_right=116	max_min_right_minus=87	max_min_right_plus=116	max_pos_hash_score=478	max_right=221	max_right_minus=221	max_right_plus=219	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.94	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39
JC	2048	.	NC_000913	3584195	-1	NC_000913	4250983	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__3584195__-1__NC_000913__4250983__1__0____251__251__1__0	max_left=248	max_left_minus=248	max_left_plus=240	max_min_left=103	max_min_left_minus=65	max_min_left_plus=103	max_min_right=122	max_min_right_minus=121	max_min_right_plus=122	max_pos_hash_score=478	max_right=213	max_right_minus=209	max_right_plus=213	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=42	polymorphism_frequency=9.545e-01	pos_hash_score=39	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=41
JC	2049	.	NC_000913	3584195	-1	NC_000913	4541432	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__3584195__-1__NC_000913__4541432__-1__0____251__251__1__0	max_left=241	max_left_minus=241	max_left_plus=229	max_min_left=122	max_min_left_minus=102	max_min_left_plus=122	max_min_right=114	max_min_right_minus=110	max_min_right_plus=114	max_pos_hash_score=478	max_right=248	max_right_minus=227	max_right_plus=248	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=231	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	2050	.	NC_000913	3652036	1	NC_000913	3938725	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.085e-02	junction_possible_overlap_registers=238	key=NC_000913__3652036__1__NC_000913__3938724__1__1____251__251__1__0	max_left=135	max_left_minus=135	max_left_plus=135	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=122	max_min_right_minus=122	max_min_right_plus=100	max_pos_hash_score=476	max_right=122	max_right_minus=122	max_right_plus=100	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.07	new_junction_read_count=3	polymorphism_frequency=5.085e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	2051	.	NC_000913	4124498	1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=239	key=NC_000913__4124498__1__NC_000913__4499511__-1__0____251__251__0__1	max_left=246	max_left_minus=230	max_left_plus=246	max_min_left=121	max_min_left_minus=118	max_min_left_plus=121	max_min_right=125	max_min_right_minus=125	max_min_right_plus=113	max_pos_hash_score=478	max_right=247	max_right_minus=244	max_right_plus=247	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=52	polymorphism_frequency=9.622e-01	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=234	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=52
JC	2052	.	NC_000913	4124502	-1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=19	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__4124503__-1__NC_000913__4498181__1__1____251__251__0__1	max_left=241	max_left_minus=241	max_left_plus=237	max_min_left=121	max_min_left_minus=95	max_min_left_plus=121	max_min_right=112	max_min_right_minus=112	max_min_right_plus=111	max_pos_hash_score=476	max_right=227	max_right_minus=227	max_right_plus=225	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=52	polymorphism_frequency=9.807e-01	pos_hash_score=45	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=233	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=50
JC	2053	.	NC_000913	4498181	-1	NC_000913	4499518	1	0	alignment_overlap=6	coverage_minus=12	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=233	key=NC_000913__4498181__-1__NC_000913__4499512__1__6____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=237	max_min_left=89	max_min_left_minus=88	max_min_left_plus=89	max_min_right=112	max_min_right_minus=111	max_min_right_plus=112	max_pos_hash_score=466	max_right=238	max_right_minus=214	max_right_plus=238	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.65	new_junction_read_count=29	polymorphism_frequency=9.516e-01	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=6	side_1_possible_overlap_registers=239	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=29
JC	2054	.	NC_000913	4620827	-1	NC_000913	4620871	1	-66	alignment_overlap=-66	coverage_minus=8	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=173	key=NC_000913__4620827__-1__NC_000913__4620871__1__-66__AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT__251__251__0__0	max_left=163	max_left_minus=162	max_left_plus=163	max_min_left=85	max_min_left_minus=58	max_min_left_plus=85	max_min_right=91	max_min_right_minus=91	max_min_right_plus=79	max_pos_hash_score=346	max_right=178	max_right_minus=178	max_right_plus=176	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26	unique_read_sequence=AATGGGTGCGGCTTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGTGAAAACATGTTGAT
UN	2055	.	NC_000913	15595	16514
UN	2056	.	NC_000913	16516	16517
UN	2057	.	NC_000913	16520	16520
UN	2058	.	NC_000913	16522	16525
UN	2059	.	NC_000913	16527	16527
UN	2060	.	NC_000913	19774	19776
UN	2061	.	NC_000913	19778	19778
UN	2062	.	NC_000913	19780	19785
UN	2063	.	NC_000913	19788	19795
UN	2064	.	NC_000913	19975	20571
UN	2065	.	NC_000913	223869	224567
UN	2066	.	NC_000913	224569	224572
UN	2067	.	NC_000913	224574	224574
UN	2068	.	NC_000913	225118	225366
UN	2069	.	NC_000913	227200	227200
UN	2070	.	NC_000913	227202	227203
UN	2071	.	NC_000913	227209	228452
UN	2072	.	NC_000913	257908	258683
UN	2073	.	NC_000913	270709	270709
UN	2074	.	NC_000913	270712	270715
UN	2075	.	NC_000913	270717	270717
UN	2076	.	NC_000913	270719	271079
UN	2077	.	NC_000913	271082	271083
UN	2078	.	NC_000913	274143	274143
UN	2079	.	NC_000913	274145	274146
UN	2080	.	NC_000913	274152	274928
UN	2081	.	NC_000913	274930	274933
UN	2082	.	NC_000913	274936	274936
UN	2083	.	NC_000913	275509	278890
UN	2084	.	NC_000913	278938	278938
UN	2085	.	NC_000913	278946	278970
UN	2086	.	NC_000913	278972	278972
UN	2087	.	NC_000913	278975	278976
UN	2088	.	NC_000913	278978	278978
UN	2089	.	NC_000913	278981	282417
UN	2090	.	NC_000913	282422	282422
UN	2091	.	NC_000913	282424	282424
UN	2092	.	NC_000913	282429	282429
UN	2093	.	NC_000913	282432	282432
UN	2094	.	NC_000913	282434	282434
UN	2095	.	NC_000913	282437	282437
UN	2096	.	NC_000913	282443	282443
UN	2097	.	NC_000913	282453	282453
UN	2098	.	NC_000913	282476	282476
UN	2099	.	NC_000913	282486	282487
UN	2100	.	NC_000913	282496	282496
UN	2101	.	NC_000913	282499	282499
UN	2102	.	NC_000913	282542	282542
UN	2103	.	NC_000913	282611	282611
UN	2104	.	NC_000913	282630	282630
UN	2105	.	NC_000913	282639	282639
UN	2106	.	NC_000913	282645	282645
UN	2107	.	NC_000913	282660	282660
UN	2108	.	NC_000913	282662	282663
UN	2109	.	NC_000913	282666	305511
UN	2110	.	NC_000913	305514	305514
UN	2111	.	NC_000913	305525	305525
UN	2112	.	NC_000913	305558	305558
UN	2113	.	NC_000913	305569	305569
UN	2114	.	NC_000913	305571	305571
UN	2115	.	NC_000913	305574	305576
UN	2116	.	NC_000913	305592	305592
UN	2117	.	NC_000913	305597	305597
UN	2118	.	NC_000913	305602	305602
UN	2119	.	NC_000913	305610	305610
UN	2120	.	NC_000913	305615	308086
UN	2121	.	NC_000913	308089	308091
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UN	2516	.	NC_000913	4238609	4238627
UN	2517	.	NC_000913	4238629	4238629
UN	2518	.	NC_000913	4238631	4238631
UN	2519	.	NC_000913	4238634	4238634
UN	2520	.	NC_000913	4238640	4238642
UN	2521	.	NC_000913	4238644	4238644
UN	2522	.	NC_000913	4238649	4245142
UN	2523	.	NC_000913	4245144	4245145
UN	2524	.	NC_000913	4245147	4245155
UN	2525	.	NC_000913	4245157	4245168
UN	2526	.	NC_000913	4245170	4245170
UN	2527	.	NC_000913	4245172	4245177
UN	2528	.	NC_000913	4245179	4245184
UN	2529	.	NC_000913	4245187	4245191
UN	2530	.	NC_000913	4245193	4245198
UN	2531	.	NC_000913	4245200	4245203
UN	2532	.	NC_000913	4245208	4245210
UN	2533	.	NC_000913	4245212	4245215
UN	2534	.	NC_000913	4245217	4247389
UN	2535	.	NC_000913	4247392	4247395
UN	2536	.	NC_000913	4247397	4247398
UN	2537	.	NC_000913	4247400	4247403
UN	2538	.	NC_000913	4247405	4247408
UN	2539	.	NC_000913	4247410	4247410
UN	2540	.	NC_000913	4247412	4247412
UN	2541	.	NC_000913	4247426	4247426
UN	2542	.	NC_000913	4247431	4247434
UN	2543	.	NC_000913	4247436	4247439
UN	2544	.	NC_000913	4247441	4247443
UN	2545	.	NC_000913	4247445	4247445
UN	2546	.	NC_000913	4247447	4247455
UN	2547	.	NC_000913	4247459	4247466
UN	2548	.	NC_000913	4247468	4247474
UN	2549	.	NC_000913	4247476	4247476
UN	2550	.	NC_000913	4247478	4247478
UN	2551	.	NC_000913	4247480	4247480
UN	2552	.	NC_000913	4247483	4247485
UN	2553	.	NC_000913	4247487	4247491
UN	2554	.	NC_000913	4247493	4247493
UN	2555	.	NC_000913	4247552	4247552
UN	2556	.	NC_000913	4247567	4247567
UN	2557	.	NC_000913	4247570	4247572
UN	2558	.	NC_000913	4247574	4247574
UN	2559	.	NC_000913	4247576	4247580
UN	2560	.	NC_000913	4247582	4247583
UN	2561	.	NC_000913	4247585	4247600
UN	2562	.	NC_000913	4247610	4247610
UN	2563	.	NC_000913	4247617	4250982
UN	2564	.	NC_000913	4276126	4276126
UN	2565	.	NC_000913	4276174	4276180
UN	2566	.	NC_000913	4276182	4276183
UN	2567	.	NC_000913	4276186	4276193
UN	2568	.	NC_000913	4276195	4276195
UN	2569	.	NC_000913	4276197	4276197
UN	2570	.	NC_000913	4276200	4276200
UN	2571	.	NC_000913	4276204	4276210
UN	2572	.	NC_000913	4276220	4276221
UN	2573	.	NC_000913	4276228	4276230
UN	2574	.	NC_000913	4276253	4276253
UN	2575	.	NC_000913	4498182	4499517
UN	2576	.	NC_000913	4507457	4508677
UN	2577	.	NC_000913	4508681	4508681
UN	2578	.	NC_000913	4508685	4508691
UN	2579	.	NC_000913	4509562	4509562
UN	2580	.	NC_000913	4509592	4509592
UN	2581	.	NC_000913	4509623	4509623
UN	2582	.	NC_000913	4509628	4509628
UN	2583	.	NC_000913	4509630	4509630
UN	2584	.	NC_000913	4509632	4509632
UN	2585	.	NC_000913	4509637	4509637
UN	2586	.	NC_000913	4509667	4509667
UN	2587	.	NC_000913	4519240	4519420
UN	2588	.	NC_000913	4519423	4519424
UN	2589	.	NC_000913	4519430	4519430
UN	2590	.	NC_000913	4519432	4519432
UN	2591	.	NC_000913	4519435	4519435
UN	2592	.	NC_000913	4519437	4519437
UN	2593	.	NC_000913	4519440	4519440
UN	2594	.	NC_000913	4519452	4519452
UN	2595	.	NC_000913	4519454	4519454
UN	2596	.	NC_000913	4519463	4519463
UN	2597	.	NC_000913	4519470	4519470
UN	2598	.	NC_000913	4519519	4519519
UN	2599	.	NC_000913	4519535	4519535
UN	2600	.	NC_000913	4519539	4519539
UN	2601	.	NC_000913	4519541	4519541
UN	2602	.	NC_000913	4519549	4519549
UN	2603	.	NC_000913	4519559	4519559
UN	2604	.	NC_000913	4519561	4519561
UN	2605	.	NC_000913	4519573	4519577
UN	2606	.	NC_000913	4519582	4519583
UN	2607	.	NC_000913	4519585	4519585
UN	2608	.	NC_000913	4519591	4523853
UN	2609	.	NC_000913	4523858	4523859
UN	2610	.	NC_000913	4523861	4523861
UN	2611	.	NC_000913	4523866	4523867
UN	2612	.	NC_000913	4523878	4523880
UN	2613	.	NC_000913	4523882	4523882
UN	2614	.	NC_000913	4523884	4523885
UN	2615	.	NC_000913	4523888	4523890
UN	2616	.	NC_000913	4523895	4523896
UN	2617	.	NC_000913	4523898	4523898
UN	2618	.	NC_000913	4523903	4523903
UN	2619	.	NC_000913	4523905	4523908
UN	2620	.	NC_000913	4523910	4523910
UN	2621	.	NC_000913	4523913	4523916
UN	2622	.	NC_000913	4523918	4523919
UN	2623	.	NC_000913	4523921	4523922
UN	2624	.	NC_000913	4523924	4523924
UN	2625	.	NC_000913	4523926	4523937
UN	2626	.	NC_000913	4523939	4523943
UN	2627	.	NC_000913	4523947	4523948
UN	2628	.	NC_000913	4523950	4523950
UN	2629	.	NC_000913	4523952	4523952
UN	2630	.	NC_000913	4523979	4523982
UN	2631	.	NC_000913	4523984	4523990
UN	2632	.	NC_000913	4523994	4524441
UN	2633	.	NC_000913	4524478	4524478
UN	2634	.	NC_000913	4524493	4524494
UN	2635	.	NC_000913	4524498	4524498
UN	2636	.	NC_000913	4524500	4524500
UN	2637	.	NC_000913	4524505	4524505
UN	2638	.	NC_000913	4524512	4524512
UN	2639	.	NC_000913	4524514	4524514
UN	2640	.	NC_000913	4524521	4524521
UN	2641	.	NC_000913	4524523	4524523
UN	2642	.	NC_000913	4524527	4524527
UN	2643	.	NC_000913	4524534	4524536
UN	2644	.	NC_000913	4524539	4524540
UN	2645	.	NC_000913	4524542	4524542
UN	2646	.	NC_000913	4524544	4524544
UN	2647	.	NC_000913	4524547	4524549
UN	2648	.	NC_000913	4524552	4524552
UN	2649	.	NC_000913	4524555	4524555
UN	2650	.	NC_000913	4524559	4525971
UN	2651	.	NC_000913	4569765	4573265
UN	2652	.	NC_000913	4573273	4573273
UN	2653	.	NC_000913	4573286	4573286
UN	2654	.	NC_000913	4573288	4573288
UN	2655	.	NC_000913	4573294	4573294
UN	2656	.	NC_000913	4573326	4573326
UN	2657	.	NC_000913	4573359	4573420
UN	2658	.	NC_000913	4573423	4573423
UN	2659	.	NC_000913	4573434	4573435
UN	2660	.	NC_000913	4573452	4573452
UN	2661	.	NC_000913	4573459	4573460
UN	2662	.	NC_000913	4573464	4573465
UN	2663	.	NC_000913	4573469	4573469
UN	2664	.	NC_000913	4573472	4573477
UN	2665	.	NC_000913	4573479	4573479
UN	2666	.	NC_000913	4573481	4573481
UN	2667	.	NC_000913	4573484	4591597
UN	2668	.	NC_000913	4591599	4591599
UN	2669	.	NC_000913	4591610	4591610
UN	2670	.	NC_000913	4620828	4620870
UN	2671	.	NC_000913	4621677	4623105