Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,105,376 IS2 (–) +5 bp intergenic (+83/‑34) csgC → / → ymdA curlin chaperone/uncharacterized protein YmdA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)23 (0.630) 22/486 0.6 91.8% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 1105376 = 2 (0.060)intergenic (+83/‑38) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
* ? NC_000913 = 11053803 (0.080)30 (0.820) 27/488 0.4 90.7% intergenic (+87/‑34) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
?NC_000913 1467910 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region

ATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTT  >  NC_000913/1467679‑1468139
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      
aTGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTc                                                                                                                                                                                                                    >  1:9937/1‑251 (MQ=255)
          ggTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTg                                                                                                                                                                                                          >  1:73460/1‑251 (MQ=255)
                       cgcACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAcc                                                                                                                                                                                             >  1:173552/1‑251 (MQ=255)
                          acaGGATATAGTTATACCAGCGTTATTGGCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATTCGACAATCAGCGGAGAATTCCCTCTGGGGTGTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAt                                                                                                                                                                                          <  1:343024/251‑1 (MQ=255)
                                         aCCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGcc                                                                                                                                                                           <  1:447236/251‑1 (MQ=255)
                                          ccAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCg                                                                                                                                                                          >  1:312397/1‑251 (MQ=255)
                                             gCGTTATTGTCGTTAGTTGTGAGTCGTCTGTATATCTGAAGGGAGATACGACAATCAGCGGAGAATACCCTCTGTGGTTTGCCGTGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTTACCCATTACAAGCCCGCTGCCGCAg                                                                                                                                                                       <  2:393304/251‑1 (MQ=39)
                                                     gTCGTTAGTGGTGAGTCGTCGGTTTAGCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGGTTGCCGGGGTTATTCGGTTACAGGATAAAGCTTTGCTTGAAATTTGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGTCAATAACCCTG‑GATTTGCCCCTTTATTTCCATACATCTGTTATCTCTTAACCCATTACAATCCCTCTTCCGTAGATATTccc                                                                                                                                                               <  2:9937/251‑1 (MQ=255)
                                                          tagtggccagccgtcgGTATATCTGAATGGAGATCCGACAATCAGCGGAGACTTCTCTCTGGAGGTTGCCAGGGTTAGTCGAGTACAGGATAACGCTTTGCTGGACATTGGCAGTGGCGCCGAGATAACAATGCCGGAGATTGTCA‑GTTTTGAACATCATGGGACAAAAAACCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCACCCTGCCGCAACTATTCCCGCGgc                                                                                                                                                          >  2:194096/12‑251 (MQ=19)
                                                              ggtgAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcgagc                                                                                                                                                      <  1:360323/251‑1 (MQ=255)
                                                                        cgGTATATCTGAATGTAGATACGACAAGCAGCTGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTTGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGATTCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCa                                                                                                                                             <  2:162284/250‑1 (MQ=255)
                                                                            atatCTGAATGGAGATACGACACTCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAACGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACC‑GTTTTGAACGTCATGGTTCAAGAACCCTG‑GATTTGCCCCTATTTTTCCAGAATTCTGTTATCACTTAACCCCTTACAAGCCCGCTTCCGCAGTTATTCACGtagtgtgcgttaacccctcgc                                                                                                                                         >  2:297566/1‑230 (MQ=255)
                                                                                  gAATGGAGATACGACAAGCAGCGGAGAATTCCCGCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCGATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGc                                                                                                                                  <  1:213194/251‑1 (MQ=255)
                                                                                         gaTACGACTAACCGCGGAGAATTCCCTCTTTGGCTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTTTAAATTGGCAGTGGCGCTACGCTAACAATGCTGGATATGGTCACGTATT‑AACTTCATTGCACAAGAACCCGGTGCTTT‑TCTCTCTATTGCCAGACAGCTAGTATCTCTTGACCCATTTCAATCTCGCTGCCGCAGATATTCCCGTGGCGTTCGATACCCCAGCGTTCTATGTGGATGcc                                                                                                                           <  2:447294/251‑1 (MQ=255)
                                                                                                ccagcAGCGGATAATACGCTCTGGGGTTGTCCGGGGTTATTCGTGTACATGATAAAGCTTTGCTGGAAATTGGCAGAGGCGCTACGCTAACTATGCAGGATATTGACA‑GTTGTGAACATCATGGGACAAGAACCCTG‑TATTTGCCCCTATATTTCCAGACATCTGTTAGCACTTAACCCATTACAAGCCCGCTGCCGCATATATTCCCGTGGCTAGCGAAAACCCAGCGCACTATGCTGATTCCACTCggt                                                                                                                    <  2:194295/247‑3 (MQ=21)
                                                                                                  aTCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTAAAGGATAAAGCTTTGCAGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGCCA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGCTATCACTTAACCAATTACAAGCCCGCTGCAGCAGATATTCCCGTGGCGACCGATAACCCACCGCACTATGCGGCTACCATTCTTtat                                                                                                                  >  2:26828/1‑251 (MQ=37)
                                                                                                                cccTCTGGGGTGTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑TATTTGCCCCTATATTTCCAGACATCTGTTATCACtt                                                                                                                                                                                                 <  2:179800/158‑1 (MQ=255)
                                                                                                                      ggggTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGc                                                                                               >  1:168725/1‑250 (MQ=255)
                                                                                                                                    ttATTCGGGTACAGGGTAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTtgctgc                                                                                >  1:114106/1‑251 (MQ=255)
                                                                                                                                     tATTCGGGTACAGGATAAAGCTTTGCTTGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑TATTTGCCCCTATATTTCCAGACATCTGTTAGCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCTCTATGCGGAGGCCATTCGTTATAATGCTCTAACGCCTCTGCAAGGTTCTTtgctgc                                                                                <  2:63729/250‑1 (MQ=255)
                                                                                                                                                                  aaaTTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACt                                                  >  1:188943/1‑251 (MQ=255)
                                                                                                                                                                   aaTTGGCAGTGGCACTACGCGAAAAATGCAGGATATTGATA‑GTTTTGAACATCATGTGACAAGAACCCTG‑GATTTGCCCCTATATTTCCATACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGTCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTg                                                 <  2:245053/251‑1 (MQ=17)
                                                                                                                                                                            tGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGCCAAGAACCATG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAAATATTCCCGTGGCGAGCGCTAACCCAGCGAACTCTGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCCAGGATCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATCCTGATGTAGtac                                        >  2:161755/1‑249 (MQ=17)
                                                                                                                                                                                gctacgataACAATGCAGGATATTGACC‑GTTTTGAACATCATGAGACAAAAACCCTG‑GCTTTGCCCGTATATTTCCAGACATCTGTTATCACTTAACACATTACACGCCCGCTGCCGCCGATATTCCCGTGGCGAACGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGATCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTGACCCGTCTGGTTCGGTCATGATACTGATGTAGTCACGCt                                    >  2:54998/1‑251 (MQ=14)
                                                                                                                                                                                  tacgctaACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCttt                                  >  1:159744/1‑251 (MQ=255)
                                                                                                                                                                                                  gATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGc                  >  1:398665/1‑251 (MQ=255)
                                                                                                                                                                                                    tatTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGctc                >  1:370311/1‑251 (MQ=255)
                                                                                                                                                                                                     atTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGATGctct               >  1:135539/1‑251 (MQ=255)
                                                                                                                                                                                                      ttGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGctctc              >  1:390084/1‑251 (MQ=255)
                                                                                                                                                                                                           a‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTCTGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGCTGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCt          >  2:264714/1‑250 (MQ=255)
                                                                                                                                                                                                                    aCATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGtt  >  1:348158/1‑250 (MQ=38)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      
ATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACA‑GTTTTGAACATCATGGGACAAGAACCCTG‑GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTT  >  NC_000913/1467679‑1468139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.