| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 23 (0.630) | 22/486 | 0.6 | 91.8% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 2 (0.060) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 3 (0.080) | 30 (0.820) | 27/488 | 0.4 | 90.7% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAAT > NC_000913/381030‑381507 | gATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAAtctc > 2:209970/1‑251 (MQ=255) aTCCATACTATGATTATTGGTCCGTACTTGGTCGCCTAATTATGTC‑TGGTTTGCATCTTCCGAGTCGGCAATAAACCATTGCTGACCAATCGTTTCTTCCGCTGCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAAGTTTTACGCCATTGCTTATTATTGTGCCAGGTCGAATAAACGCATAATTACTAGACTGTCCTCCTGAATCTCCATACATCCAATATCTCTTAAATAAGTTATAGTCTTAAt < 2:282651/251‑1 (MQ=255) gatTACTGGTACGTACTGGTGCGCCTAAATTTGCCGTGGTT‑GCCACCACCTAGTTGGCAAAAAATCATTGCGCACTAATCTTTGCTTCCGGTTCAATAACCGCATATTTAATCTCGGCGGCAAATCCAATTTTTACGCAATTGCTGATTATTGTGCCAGGACGAATAATCGCATAATTACTAGACTGGCCCCCTGAATCTCCATACATCCAATATCGCTTAAATAAGTGATAGTCTTAATACTAGTTTTTa < 2:214720/251‑1 (MQ=25) gtacTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAc < 2:87542/197‑1 (MQ=255) gtacTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAc > 1:87542/1‑197 (MQ=255) tgtgCGCATAAAAATGCC‑TGGTTTGCAACTACCGAGACGGCAATAAAACCTTGCGGACAAAACGTTGCTTCCGATTCAATAACCGCATTTTTAATCTCGGAGGCAAAACCAATTTTTACGCCATTGCTGCTTATTGCGCCAGGACGAATAAACGCATAATTACTACACTGGCCCCCTGAATCTCCAGACACCAAATATCACTTAAATAAGTGATAGTCTTAATACTATTTTTTCGACTAGTCATTGgaaac > 2:432289/1‑248 (MQ=37) atatGCC‑TTGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgattga < 1:13839/251‑1 (MQ=255) tACCGCGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGgaga > 1:120221/1‑250 (MQ=255) gTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAGTTGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGGGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAAAGCTGATTGATGTCTTAGGGCCGGATAAAcac > 2:108210/1‑247 (MQ=37) aaaCATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCCCGGTGGCAAAACCAATTTTTACGCCAATGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAcc < 2:111926/251‑1 (MQ=255) cAATCGTTGCTTCCGCTTAAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCACCCTGAATCTCCAGACAACCAATAACACTTAAATAAGTGATAGTCTTAATAC‑AGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGAAGACGGAGTCCCACCCAGGaaaaagt > 2:246622/1‑248 (MQ=25) gtaaagaaCCGCATTTTTAATCGCGGTGGAAAAATCAATTTTTACGCCATTGCTGAGTATTGTTCCAGTACGAATAAACGCATAATTCCTAGCCTGGCCCCCTGAATCGACAGAAAACCAATATAACTTAAATAAGTGATAGTCTTAATCCTATTTTTTAGACTAGTCATTGGATATCAGATGACTGACGTCTTAGGGCCGGAGAAACGCAGACGGCGTTCCTCCCAGGATAAGATCGCACTTGTCcagca < 2:13054/245‑1 (MQ=12) tCAATAGCCGCATTTTTAATCTCGGAGGCAAAACCAATTTTTACGCCATTGCTGATTATTATGCCAGGACGAATAAACGAATAATTACTAGACTAGCCCCCTGAATCTCCAGAACACCAATATCACTTAAATAAGTGATAGTCTTAATACTCGTATTTAGACTAGTCATTGGAAAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGAACCACAAAGGAAAAGATAGCAAttttacaga > 2:245579/1‑242 (MQ=18) tCAATACCCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTAAGCCATTGATGATTATTGTTCCAGGACGAATTAACGCCTAATTACTAGACAGACCCCCTGAATCTCAAGACAACCAATATCACTTAAAGAAGTAATCGACTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGGTTGTTGTATTAGGGCCTGAGAACCGCAACCGGCGTAACCCACCGACAAAGATCGAAATTGTTcaga > 2:167359/1‑248 (MQ=16) tttAATCTCGGTGGCAAACCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCCTTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACCGGAAAAGATCGCAATTGTTCAGCAGTGCTTTGAACCggg > 2:271015/1‑251 (MQ=255) aaTCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGAt < 1:209970/251‑1 (MQ=255) aTCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAtt > 2:154228/1‑152 (MQ=255) aTCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAtt < 1:154228/152‑1 (MQ=255) ctcGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGAc > 1:293711/1‑251 (MQ=255) aaTTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAACGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGc > 2:324241/1‑251 (MQ=255) aTTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTATCCCTCGTTGCCCGGCAACATgg > 1:244307/1‑251 (MQ=255) tGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGgt < 1:399558/250‑1 (MQ=255) gCTGATTATTGTGCCAGGACGAATAAACGCATAATTCCTAGTCTGGCCCATTGAATCTCCAGACAACCAATATCACTTAAATAAGGGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGgtgt < 1:427972/251‑1 (MQ=255) gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTTATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAgccagcca < 1:207834/251‑1 (MQ=255) ccAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGccagccag < 1:415615/251‑1 (MQ=40) aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGCAAAGCTCGCAATTGTTca > 2:32585/1‑175 (MQ=255) aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTca < 1:32585/175‑1 (MQ=39) aaaCGCATACTTACTAGACTAACCAACTGAAAATCCAGCCAACCACTATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTCGTCATTGGAGAACAGAAGATTGATGTCTTAGGACCGGAGAAACGCAGACGGCGTACAACACAGGAAAAGATAGCAATAGTTCAGCAGAGCATTGAACCGGAGATGACGGTCTCCCTCGTTGCCCGACAACCTGAGGTAGcagcccgaccgttctttctttg > 2:424854/1‑234 (MQ=2) aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGc < 1:271015/251‑1 (MQ=33) tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAAt > 1:398900/1‑251 (MQ=11) | GATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAAT > NC_000913/381030‑381507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |