New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381260 =	NA (NA)	21 (0.580)	21/488	0.7	100%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	481030 =	0 (0.000)					intergenic (‑322/+224)	tomB/acrB	Hha toxicity modulator TomB/multidrug efflux pump RND permease AcrB

AGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGG  >  NC_000913/480796‑481275                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                      agatgtaatttgtcggctgcttcacccagttgacgggcaacgaaggagaccgtcagccccggttcaaagcatgtctgaacaattgcgatcatttcctgtgtggtacgccgtctgcgtttctccggctctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatgtaagtgatattggttgtcttgagattcagggggccagcctaTACCGCAAATAATTAAg                                                                                                                                                                                                                                       <  2:121674‑M2/17‑1 (MQ=255) agaaataactggctggatgctacaccatgttgccgggcaacgagagagaccggcatccccggttcaaagctctgctgagcaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgtgctacaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggcgattcagggggcaagtctaTACCGCAATGAATTaa                                                                                                                                                                                                                                        >  2:369357‑M2/235‑250 (MQ=255)      taactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAAt                                                                                                                                                                                                                                    >  1:363809‑M2/230‑249 (MQ=255)         actggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttcttcaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggcaggcttAACCGCAAATAATTAAGAataggcc                                                                                                                                                                                                                               >  1:313563‑M2/227‑248 (MQ=255)               ggctgctacactatgttgccgggcaacgtgggagaccgtcctcccctgttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggctagtctaTACCGCAAATAATTAAGAATAGCCTCTAAAt                                                                                                                                                                                                                         <  2:110017‑M2/31‑1 (MQ=255)                      acaccatgttgccgggcaacaagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATg                                                                                                                                                                                                                  >  1:267501‑M2/214‑251 (MQ=255)                             gttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGattatt                                                                                                                                                                                                           >  1:72505‑M2/207‑251 (MQ=255)                                      caacgagggagaccggcatccccggttcaaagctctgctgaacaattgcgatctttgcctgtgtggtacgctgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTAtt                                                                                                                                                                                                  <  1:229738‑M2/54‑1 (MQ=255)                                                         acccggatcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcttttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtagtaagactatcacttatttaagttatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTAGTAAATCTATTAGCGCTACTTAATATaaa                                                                                                                                                                                <  2:69893‑M2/72‑1 (MQ=255)                                                                      ctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATc                                                                                                                                                                   >  1:140025‑M2/166‑250 (MQ=255)                                                                          gcttaacaattgcgatcttttcctgtgttgtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatctcttatttaagtgatattgtttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTa                                                                                                                                                               <  1:317428‑M2/89‑1 (MQ=255)                                                                            tgaacatttgctatctttacctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccaggctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTGCTTAATATAAATTAACTAACAATCAGTAtt                                                                                                                                                             <  2:172314‑M2/91‑1 (MQ=255)                                                                                                           gccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTAttttt                                                                                                                                                          <  1:375740‑M2/94‑1 (MQ=255)                                                                                                           gccgtctgcgtttctccgaccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggatattcaggggaccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTCACACTACTTAATATAACTTAACTAACAATCAGTtttttt                                                                                                                                                          >  2:375740‑M2/129‑222 (MQ=255)                                                                                                                ctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCg                                                                                                                        >  1:137040‑M2/124‑251 (MQ=255)                                                                                                                            ggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTg                                                                                                            >  1:222591‑M2/112‑251 (MQ=255)                                                                                                                               cctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGt                                                                                                         >  1:359099‑M2/109‑251 (MQ=255)                                                                                                                                                                                                         tattgtttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGTATTATTCAATCTATTAGCGATACTTAATATAATTTAACTAACAATAAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGTGATCCTGAGTTGGTGGTTCAATTACTCCTTCATGTTCGTAGGATAGGAGTAAAAAAAGCTGCTTACGCGGCCTTAGTGATTac                                >  2:62757‑M2/35‑250 (MQ=255)                                                                                                                                                                                                                                 ggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTAAGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGAc         >  2:318558‑M2/11‑249 (MQ=255)                                                                                                                                                                                                                                     agtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATTGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATg   <  1:412269‑M2/245‑1 (MQ=255)                                                                                                                                                                                                                                       tctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATTGATTATTAAATTTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATgg  <  2:313563‑M2/246‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                      AGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGG  >  NC_000913/480796‑481275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.