New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381260 =	NA (NA)	21 (0.580)	21/488	0.7	100%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	481030 =	0 (0.000)					intergenic (‑322/+224)	tomB/acrB	Hha toxicity modulator TomB/multidrug efflux pump RND permease AcrB

GATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAAT  >  NC_000913/381030‑381507                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        gATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAAtctc                                                                                                                                                                                                                                     >  2:209970/1‑251 (MQ=255)                                        aTCCATACTATGATTATTGGTCCGTACTTGGTCGCCTAATTATGTC‑TGGTTTGCATCTTCCGAGTCGGCAATAAACCATTGCTGACCAATCGTTTCTTCCGCTGCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAAGTTTTACGCCATTGCTTATTATTGTGCCAGGTCGAATAAACGCATAATTACTAGACTGTCCTCCTGAATCTCCATACATCCAATATCTCTTAAATAAGTTATAGTCTTAAt                                                                                                                                                                                              <  2:282651/251‑1 (MQ=255)                                                   gatTACTGGTACGTACTGGTGCGCCTAAATTTGCCGTGGTT‑GCCACCACCTAGTTGGCAAAAAATCATTGCGCACTAATCTTTGCTTCCGGTTCAATAACCGCATATTTAATCTCGGCGGCAAATCCAATTTTTACGCAATTGCTGATTATTGTGCCAGGACGAATAATCGCATAATTACTAGACTGGCCCCCTGAATCTCCATACATCCAATATCGCTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                                                                                                                                                                                   <  2:214720/251‑1 (MQ=25)                                                               gtacTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAc                                                                                                                                                                                                                             <  2:87542/197‑1 (MQ=255)                                                               gtacTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAc                                                                                                                                                                                                                             >  1:87542/1‑197 (MQ=255)                                                                    tgtgCGCATAAAAATGCC‑TGGTTTGCAACTACCGAGACGGCAATAAAACCTTGCGGACAAAACGTTGCTTCCGATTCAATAACCGCATTTTTAATCTCGGAGGCAAAACCAATTTTTACGCCATTGCTGCTTATTGCGCCAGGACGAATAAACGCATAATTACTACACTGGCCCCCTGAATCTCCAGACACCAAATATCACTTAAATAAGTGATAGTCTTAATACTATTTTTTCGACTAGTCATTGgaaac                                                                                                                                                                  >  2:432289/1‑248 (MQ=37)                                                                               atatGCC‑TTGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgattga                                                                                                                                                       <  1:13839/251‑1 (MQ=255)                                                                                                  tACCGCGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGgaga                                                                                                                                      >  1:120221/1‑250 (MQ=255)                                                                                                        gTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAGTTGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGGGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAAAGCTGATTGATGTCTTAGGGCCGGATAAAcac                                                                                                                                 >  2:108210/1‑247 (MQ=37)                                                                                                                  aaaCATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCCCGGTGGCAAAACCAATTTTTACGCCAATGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAcc                                                                                                                     <  2:111926/251‑1 (MQ=255)                                                                                                                               cAATCGTTGCTTCCGCTTAAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCACCCTGAATCTCCAGACAACCAATAACACTTAAATAAGTGATAGTCTTAATAC‑AGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGAAGACGGAGTCCCACCCAGGaaaaagt                                                                                                       >  2:246622/1‑248 (MQ=25)                                                                                                                                               gtaaagaaCCGCATTTTTAATCGCGGTGGAAAAATCAATTTTTACGCCATTGCTGAGTATTGTTCCAGTACGAATAAACGCATAATTCCTAGCCTGGCCCCCTGAATCGACAGAAAACCAATATAACTTAAATAAGTGATAGTCTTAATCCTATTTTTTAGACTAGTCATTGGATATCAGATGACTGACGTCTTAGGGCCGGAGAAACGCAGACGGCGTTCCTCCCAGGATAAGATCGCACTTGTCcagca                                                                                        <  2:13054/245‑1 (MQ=12)                                                                                                                                                tCAATAGCCGCATTTTTAATCTCGGAGGCAAAACCAATTTTTACGCCATTGCTGATTATTATGCCAGGACGAATAAACGAATAATTACTAGACTAGCCCCCTGAATCTCCAGAACACCAATATCACTTAAATAAGTGATAGTCTTAATACTCGTATTTAGACTAGTCATTGGAAAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGAACCACAAAGGAAAAGATAGCAAttttacaga                                                                                         >  2:245579/1‑242 (MQ=18)                                                                                                                                                tCAATACCCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTAAGCCATTGATGATTATTGTTCCAGGACGAATTAACGCCTAATTACTAGACAGACCCCCTGAATCTCAAGACAACCAATATCACTTAAAGAAGTAATCGACTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGGTTGTTGTATTAGGGCCTGAGAACCGCAACCGGCGTAACCCACCGACAAAGATCGAAATTGTTcaga                                                                                         >  2:167359/1‑248 (MQ=16)                                                                                                                                                              tttAATCTCGGTGGCAAACCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCCTTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACCGGAAAAGATCGCAATTGTTCAGCAGTGCTTTGAACCggg                                                                         >  2:271015/1‑251 (MQ=255)                                                                                                                                                                 aaTCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGAt                                                                      <  1:209970/251‑1 (MQ=255)                                                                                                                                                                  aTCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAtt                                                                                                                                                                        >  2:154228/1‑152 (MQ=255)                                                                                                                                                                  aTCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAtt                                                                                                                                                                        <  1:154228/152‑1 (MQ=255)                                                                                                                                                                    ctcGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGAc                                                                   >  1:293711/1‑251 (MQ=255)                                                                                                                                                                                   aaTTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAACGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGc                                                    >  2:324241/1‑251 (MQ=255)                                                                                                                                                                                               aTTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTATCCCTCGTTGCCCGGCAACATgg                                        >  1:244307/1‑251 (MQ=255)                                                                                                                                                                                                 tGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGgt                                       <  1:399558/250‑1 (MQ=255)                                                                                                                                                                                                  gCTGATTATTGTGCCAGGACGAATAAACGCATAATTCCTAGTCTGGCCCATTGAATCTCCAGACAACCAATATCACTTAAATAAGGGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGgtgt                                     <  1:427972/251‑1 (MQ=255)                                                                                                                                                                                                              gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTTATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAgccagcca                         <  1:207834/251‑1 (MQ=255)                                                                                                                                                                                                               ccAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGccagccag                        <  1:415615/251‑1 (MQ=40)                                                                                                                                                                                                                        aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGCAAAGCTCGCAATTGTTca                                                                                           >  2:32585/1‑175 (MQ=255)                                                                                                                                                                                                                        aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTca                                                                                           <  1:32585/175‑1 (MQ=39)                                                                                                                                                                                                                          aaaCGCATACTTACTAGACTAACCAACTGAAAATCCAGCCAACCACTATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTCGTCATTGGAGAACAGAAGATTGATGTCTTAGGACCGGAGAAACGCAGACGGCGTACAACACAGGAAAAGATAGCAATAGTTCAGCAGAGCATTGAACCGGAGATGACGGTCTCCCTCGTTGCCCGACAACCTGAGGTAGcagcccgaccgttctttctttg             >  2:424854/1‑234 (MQ=2)                                                                                                                                                                                                                            aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGc           <  1:271015/251‑1 (MQ=33)                                                                                                                                                                                                                                     tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAAt  >  1:398900/1‑251 (MQ=11)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        GATAATTCCCTCTGGAGTTCGAACAGACACGGGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCC‑TGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAAT  >  NC_000913/381030‑381507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.