Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,942,765	Δ8 bp	noncoding (70‑77/206 nt)	gcvB →	small regulatory RNA GcvB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2942765	2942772	8	34 [0]	[0] 34	gcvB	small regulatory RNA GcvB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2942764	0 (0.000)	34 (0.480)	31/480	0.9	100%	noncoding (69/206 nt)	gcvB	small regulatory RNA GcvB
	?	NC_000913	2942773 =	0 (0.000)					noncoding (78/206 nt)	gcvB	small regulatory RNA GcvB

AAACTCGTAAGGCATTTAGCGGTGGTAATCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATC  >  NC_000913/2942528‑2943016                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    ggcatcaaaaactcgtaaggcatttagcggtggtactcgtttagacatggctattaaactttgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaaaacctatagtggcggcacttcctgtgccggaacgaaaagctttatcggaatgcgtgttctggtgcacttttggcttacggttgtgttgttg                                                                                                                                                                                                                                                >  2:552553‑M2/246‑251 (MQ=255)      caaaaactcgtaaggcatttagcggtggtaatcgtttagacatggctattaaactttgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGttt                                                                                                                                                                                                                                           >  2:318282‑M2/241‑251 (MQ=255)               gtaaggcatttagcggtggtaatcgtttagacatggctattaaacttttatgttaaatgaatttaacaattagatcactctatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagtgttatcggaatgcgtgttctggtgaccttttggcttacggttgtgTTGTTGTGTATGCAATTGGt                                                                                                                                                                                                                                  <  2:459340‑M2/20‑1 (MQ=255)                                 gtaatcgtttagacatggctattaaactttgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctagagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATgg                                                                                                                                                                                                                <  1:91582‑M2/38‑1 (MQ=255)                                   aatcgtttagacatggctattaaactttgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGt                                                                                                                                                                                                               <  1:602485‑M2/39‑1 (MQ=255)                                    atcgtttagacatggctattaaactttgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgacaagttttatcggaattcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCACTTTGTCTGCTATTCAGACCATGGt                                                                                                                                                                                                               >  2:519757‑M2/211‑249 (MQ=255)                                             acatggctattaaactttgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTAc                                                                                                                                                                                                    <  1:318282‑M2/50‑1 (MQ=255)                                                 ggctattaaactttgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCttt                                                                                                                                                                                                >  2:231804‑M2/198‑251 (MQ=255)                                                              tgatgttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTg                                                                                                                                                                                    <  2:330120‑M2/66‑1 (MQ=255)                                                                  gttaaatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataacttgtccgttgagcttctaccagtaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaaattttggcttacggttgtgTTGTTGTGTTTGCAACTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTTCTGTACAt                                                                                                                                                                               >  2:507075‑M2/181‑251 (MQ=255)                                                                      aatgaatttaacaattagatcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTAc                                                                                                                                                                           <  2:145773‑M2/75‑1 (MQ=255)                                                                                         tcacactatgtaacctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGAt                                                                                                                                                        >  1:393269‑M2/158‑251 (MQ=255)                                                                                                       ctattagtttttttaatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGc                                                                                                                                          >  1:407948‑M2/144‑251 (MQ=255)                                                                                                            agcttttttaatctgagccattataaattgtccgttgagcttctaccatcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacgtgtgtgTTGTTGTGTTTTCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTTACTTCCTTTACATTTACCCTGTTTTTCCATAGGGATTAATTTAGCACCGCCTAAt                                                                                                                                     >  2:390446‑M2/139‑251 (MQ=255)                                                                                                                    taatctgagcccttataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATTGTGATTAATGTAGCACCGCCTAATTGCGGTGc                                                                                                                             >  2:317267‑M2/131‑251 (MQ=255)                                                                                                                    taatctgagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGGAGCACCGCCTAATTGCGGTg                                                                                                                              <  1:593155‑M2/120‑1 (MQ=255)                                                                                                                          gagccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCtttttt                                                                                                                       >  1:224562‑M2/125‑251 (MQ=255)                                                                                                                           agccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgcacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGAACCGCCTAATTGCGGTGCttttttt                                                                                                                      >  1:652155‑M2/124‑251 (MQ=255)                                                                                                                           agccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCttttttt                                                                                                                      >  2:174418‑M2/124‑251 (MQ=255)                                                                                                                             ccattataaattgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTa                                                                                                                    <  1:317267‑M2/130‑1 (MQ=255)                                                                                                                              cattatcaattgtccgttgagcttctaccagcaactacctatagtggaggcacttcctgcgccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCCTGGTAGCAAAGCTACCTTTTTTCACTTCCTTTACATTTACCCTGTCTGTCCATAGTGATTCATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTAc                                                                                                                   >  2:300871‑M2/121‑251 (MQ=255)                                                                                                                                      attgtccgttgagcttctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCGGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTGACCTTGCGAt                                                                                                           <  2:488027‑M2/139‑1 (MQ=255)                                                                                                                                                      ctaccagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATcc                                                                                           >  1:505468‑M2/97‑251 (MQ=255)                                                                                                                                                        accagcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATcc                                                                                           <  1:43274‑M2/155‑1 (MQ=255)                                                                                                                                                        accagcaaatacctatagtggcggcacgtcctgagccggaacgataggttttatcggaatgcgtgttctggttaacttttggcttacgggtgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTTCCTTTTTTCACTTCCTGTACATTTACCCTGTCTTTCCATAGTGATTAATGTAGCATCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCa                                                                                          <  1:362594‑M2/156‑1 (MQ=255)                                                                                                                                                           agcaaatacctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTc                                                                                      <  2:407948‑M2/160‑1 (MQ=255)                                                                                                                                                                  acctatagtggcggcccttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTTCCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtc                                                                               <  2:504938‑M2/167‑1 (MQ=255)                                                                                                                                                                  acctatagtggcggcacttcctgagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtc                                                                               <  1:112967‑M2/167‑1 (MQ=255)                                                                                                                                                                                        gagccggaacgaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGtt                                                           <  2:334774‑M2/187‑1 (MQ=255)                                                                                                                                                                                                  gaaaagttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCAGGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCGTTCACGTCAGTACGGTTGATCTGCtgttt                                               <  1:519757‑M2/199‑1 (MQ=255)                                                                                                                                                                                                       gttttatcggaatgcgtgttctggtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTGTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGc                                          <  1:688879‑M2/204‑1 (MQ=255)                                                                                                                                                                                                                              gtgaacttttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGACTTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATc                   >  2:354368‑M2/25‑251 (MQ=255)                                                                                                                                                                                                                                     tttggcttacggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGTCCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTTCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCg             <  1:456313‑M2/233‑1 (MQ=255)                                                                                                                                                                                                                                               ggttgtgTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTTCCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATc  <  1:13609‑M2/244‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    AAACTCGTAAGGCATTTAGCGGTGGTAATCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATC  >  NC_000913/2942528‑2943016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑