Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,942,765	Δ8 bp	noncoding (70‑77/206 nt)	gcvB →	small regulatory RNA GcvB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2942765	2942772	8	34 [0]	[0] 34	gcvB	small regulatory RNA GcvB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2942764	0 (0.000)	34 (0.480)	31/480	0.9	100%	noncoding (69/206 nt)	gcvB	small regulatory RNA GcvB
	?	NC_000913	2942773 =	0 (0.000)					noncoding (78/206 nt)	gcvB	small regulatory RNA GcvB

GGCATCAAAAACTCGTAAGGCATTTAGCGGTGGTAATCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTA  >  NC_000913/2942520‑2943008                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     ggCATCAAAAACTCGTAAGGCATTTAGCGGTGGTACTCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAAAACCTATAGTGGCGGCACTTCCTGTGCCGGAACGAAAAGCTTTATCGGAATGCGTGTTCTGGTGCACTTTTGGCTTACGGTTGTGttgttg                                                                                                                                                                                                                                                >  2:552553‑M1/1‑245 (MQ=255)      cAAAAACTCGTAAGGCATTTAGCGGTGGTAATCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgttt                                                                                                                                                                                                                                           >  2:318282‑M1/1‑240 (MQ=255)               gTAAGGCATTTAGCGGTGGTAATCGTTTAGACATGGCTATTAAACTTTTATGTTAAATGAATTTAACAATTAGATCACTCTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTGTTATCGGAATGCGTGTTCTGGTGACCTTTTGGCTTACGGTTGTGttgttgtgtatgcaattggt                                                                                                                                                                                                                                  <  2:459340‑M1/251‑21 (MQ=255)                                 gtAATCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTAGAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatgg                                                                                                                                                                                                                <  1:91582‑M1/251‑39 (MQ=255)                                   aaTCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggt                                                                                                                                                                                                               <  1:602485‑M1/250‑40 (MQ=255)                                    aTCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGACAAGTTTTATCGGAATTCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcactttgtctgctattcagaccatggt                                                                                                                                                                                                               >  2:519757‑M1/1‑210 (MQ=255)                                             aCATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctac                                                                                                                                                                                                    <  1:318282‑M1/251‑51 (MQ=255)                                                 ggCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttt                                                                                                                                                                                                >  2:231804‑M1/1‑197 (MQ=255)                                                              tGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctg                                                                                                                                                                                    <  2:330120‑M1/250‑67 (MQ=255)                                                                  gTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAACTTGTCCGTTGAGCTTCTACCAGTAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAAATTTTGGCTTACGGTTGTGttgttgtgtttgcaactggtctgcgattcagaccatggtagcaaagctaccttttttcactttctgtacat                                                                                                                                                                               >  2:507075‑M1/1‑180 (MQ=255)                                                                      aaTGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttac                                                                                                                                                                           <  2:145773‑M1/251‑76 (MQ=255)                                                                                         tCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgat                                                                                                                                                        >  1:393269‑M1/1‑157 (MQ=255)                                                                                                       cTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgc                                                                                                                                          >  1:407948‑M1/1‑143 (MQ=255)                                                                                                            agcttttttaatCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCATCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGTGTGTGttgttgtgttttcaattggtctgcgattcagaccatggtagcaaagctacctttttttacttcctttacatttaccctgtttttccatagggattaatttagcaccgcctaat                                                                                                                                     >  2:390446‑M1/4‑138 (MQ=255)                                                                                                                    tAATCTGAGCCCTTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccattgtgattaatgtagcaccgcctaattgcggtgc                                                                                                                             >  2:317267‑M1/1‑130 (MQ=255)                                                                                                                    tAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatggagcaccgcctaattgcggtg                                                                                                                              <  1:593155‑M1/250‑121 (MQ=255)                                                                                                                          gAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgctttttt                                                                                                                       >  1:224562‑M1/1‑124 (MQ=255)                                                                                                                           aGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGCACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagaaccgcctaattgcggtgcttttttt                                                                                                                      >  1:652155‑M1/1‑123 (MQ=255)                                                                                                                           aGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttt                                                                                                                      >  2:174418‑M1/1‑123 (MQ=255)                                                                                                                             ccATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgctttttttta                                                                                                                    <  1:317267‑M1/251‑131 (MQ=255)                                                                                                                              cATTATCAATTGTCCGTTGAGCTTCTACCAGCAACTACCTATAGTGGAGGCACTTCCTGCGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccctggtagcaaagctaccttttttcacttcctttacatttaccctgtctgtccatagtgattcatgtagcaccgcctaattgcggtgcttttttttac                                                                                                                   >  2:300871‑M1/1‑120 (MQ=255)                                                                                                                                      aTTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttacccggtctgtccatagtgattaatgtagcaccgcctaattgcggtgctttttttgaccttgcgat                                                                                                           <  2:488027‑M1/251‑140 (MQ=255)                                                                                                                                                      cTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatcc                                                                                           >  1:505468‑M1/1‑96 (MQ=255)                                                                                                                                                        aCCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatcc                                                                                           <  1:43274‑M1/249‑156 (MQ=255)                                                                                                                                                        aCCAGCAAATACCTATAGTGGCGGCACGTCCTGAGCCGGAACGATAGGTTTTATCGGAATGCGTGTTCTGGTTAACTTTTGGCTTACGGGTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagcttccttttttcacttcctgtacatttaccctgtctttccatagtgattaatgtagcatcgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatcca                                                                                          <  1:362594‑M1/250‑157 (MQ=255)                                                                                                                                                           aGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatccagttc                                                                                      <  2:407948‑M1/251‑161 (MQ=255)                                                                                                                                                                  aCCTATAGTGGCGGCCCTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacattttccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatccagttcgaccatc                                                                               <  2:504938‑M1/251‑168 (MQ=255)                                                                                                                                                                  aCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatccagttcgaccatc                                                                               <  1:112967‑M1/251‑168 (MQ=255)                                                                                                                                                                                        gAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatccagttcgaccatctctttcacgtcagtacggtt                                                           <  2:334774‑M1/249‑188 (MQ=255)                                                                                                                                                                                                  gAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccagggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatccagttcgaccatctcgttcacgtcagtacggttgatctgctgttt                                               <  1:519757‑M1/251‑200 (MQ=255)                                                                                                                                                                                                       gTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttgtcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatccagttcgaccatctctttcacgtcagtacggttgatctgctgtttgttgc                                          <  1:688879‑M1/251‑205 (MQ=255)                                                                                                                                                                                                                              gTGAACTTTTGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgacttactgatccagttcgaccatctctttcacgtcagtacggttgatctgctgtttgttgccattagcgtctttatacgaaatc                   >  2:354368‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                                     tttGGCTTACGGTTGTGttgttgtgtttgcaattggtctgcgattcagtccatggtagcaaagctaccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaatttcggtgcttttttttaccttgcgatcgcgaattactgatccagttcgaccatctctttcacgtcagtacggttgatctgctgtttgttgccattagcgtctttatacgaaatcataccg             <  1:456313‑M1/250‑234 (MQ=255)                                                                                                                                                                                                                                               ggTTGTGttgttgtgtttgcaattggtctgcgattcagaccatggtagcaaagcttccttttttcacttcctgtacatttaccctgtctgtccatagtgattaatgtagcaccgcctaattgcggtgcttttttttaccttgcgatcgcgaattactgatccagttcgaccatctctttcacgtcagtacggttgatctgctgtttgttgccattagcgtctttatacgaaatcataccggtatcgttatc  <  1:13609‑M1/251‑245 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     GGCATCAAAAACTCGTAAGGCATTTAGCGGTGGTAATCGTTTAGACATGGCTATTAAACTTTGATGTTAAATGAATTTAACAATTAGATCACACTATGTAACCTATTAGTTTTTTTAATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTA  >  NC_000913/2942520‑2943008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑