mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 214 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 326,935 | 0 | C | T | 59.7% | 38.8 / 73.2 | 67 | D105N (GAT→AAT) | betA | choline dehydrogenase |
| * | NC_000913 | 580,020 | 0 | G | A | 56.4% | 28.3 / 60.3 | 57 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 580,115 | 0 | C | T | 55.0% | 16.2 / 78.5 | 61 | intergenic (+29/+136) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,429,207 | 0 | T | G | 53.2% | 35.4 / 125.3 | 95 | V53V (GTT→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,160 | 0 | C | G | 52.9% | 26.9 / 132.3 | 85 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 580,120 | 0 | C | T | 52.7% | 2.3 / 72.0 | 56 | intergenic (+34/+131) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 579,540 | 0 | T | C | 52.6% | 10.7 / 47.8 | 38 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,714 | 0 | A | C | 52.5% | 47.4 / 142.6 | 120 | A222A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,651 | 0 | C | T | 52.2% | 5.7 / 60.7 | 46 | intergenic (‑57/‑229) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,204 | 0 | C | T | 52.1% | 22.4 / 121.1 | 95 | D52D (GAC→GAT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,724 | 0 | A | G | 51.7% | 6.7 / 153.8 | 116 | T226A (ACC→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,708 | 0 | A | G | 51.3% | ‑6.0 / 173.9 | 118 | T220T (ACA→ACG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 580,119 | 0 | A | G | 50.9% | 5.3 / 77.9 | 57 | intergenic (+33/+132) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,429,164 | 0 | C | G | 50.6% | 6.1 / 132.2 | 82 | A39G (GCC→GGC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,171 | 0 | A | G | 50.6% | 11.3 / 118.0 | 85 | E41E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,682 | 0 | T | G | 50.4% | ‑0.2 / 136.2 | 111 | S212A (TCA→GCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,702 | 0 | A | C | 50.4% | 14.2 / 136.2 | 115 | A218A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,671 | 0 | T | C | 50.0% | ‑1.1 / 63.7 | 47 | intergenic (‑77/‑209) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,128 | 0 | A | G | 50.0% | 1.7 / 115.5 | 77 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,735 | 0 | A | G | 50.0% | ‑1.7 / 157.0 | 111 | A229A (GCA→GCG) | stfR | putative prophage side tail fiber protein StfR |