mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 78 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,037,496 | 0 | A | T | 68.2% | 13.2 / 12.5 | 22 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA |
| * | NC_000913 | 580,302 | 0 | C | T | 62.1% | 23.3 / 19.8 | 30 | R48R (AGG→AGA) | ylcI | DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 579,811 | 0 | C | T | 59.3% | 10.7 / 23.9 | 27 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 4,509,586 | 0 | A | C | 57.1% | 32.8 / 61.7 | 63 | pseudogene (108/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 1,634,799 | 0 | A | G | 56.2% | ‑4.6 / 10.0 | 18 | D29D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,778 | 0 | T | G | 55.6% | ‑5.3 / 15.7 | 18 | T36T (ACA→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,717 | 0 | A | C | 54.5% | 1.9 / 18.2 | 22 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,540 | 0 | T | C | 52.4% | ‑4.4 / 21.0 | 21 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 4,509,524 | 0 | C | T | 52.2% | 4.6 / 83.4 | 70 | pseudogene (46/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 1,636,068 | 0 | T | C | 50.0% | ‑3.9 / 44.0 | 36 | K100K (AAA→AAG) | nohA | putative prophage DNA‑packaging protein NohA |
| * | NC_000913 | 1,636,074 | 0 | C | T | 50.0% | 2.4 / 42.0 | 36 | E98E (GAG→GAA) | nohA | putative prophage DNA‑packaging protein NohA |
| * | NC_000913 | 4,509,537 | 0 | G | A | 50.0% | ‑6.3 / 73.4 | 63 | pseudogene (59/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,556 | 0 | T | C | 50.0% | ‑1.2 / 72.4 | 62 | pseudogene (78/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 579,457 | 0 | A | G | 48.0% | 0.7 / 25.2 | 25 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 580,020 | 0 | G | A | 47.8% | ‑6.0 / 27.0 | 24 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 1,634,769 | 0 | T | A | 47.6% | 6.3 / 24.5 | 21 | P39P (CCA→CCT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 4,509,544 | 0 | G | A | 47.6% | 4.8 / 80.2 | 64 | pseudogene (66/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,562 | 0 | T | C | 47.5% | 2.7 / 67.8 | 63 | pseudogene (84/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,463 | 0 | T | G | 46.3% | 10.1 / 85.1 | 83 | pseudogene (455/471 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 1,635,974 | 0 | T | G | 46.2% | 17.1 / 34.0 | 39 | I132L (ATC→CTC) | nohA | putative prophage DNA‑packaging protein NohA |