New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	28 (0.690)	28/496	0.4	93.3%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 4215399	2 (0.050)					intergenic (+190/‑79)	metA/aceB	homoserine O‑succinyltransferase/malate synthase A

ATACGATCTACGGCACATGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGTTGTGCTGAACGAAAAGAGCACAACGATCCTTCGTTCACAGTGGGGAAGTTTTCGGATCCATGACGAGGAGCTGCACGATGACTGAACAGGCAACAACAACCGATGAACTGGCTTTCACAAGGCCGTATGGCGAGCAGGAGAAGCAAATTCTTACTGCCGAAGCGGTAGAATTTCTGACTGAGCTGGTGACGCATTTTACGCCACAACGCAATAAACTTCTGGCAGCGCGCATTCAGCAGCAGCAA  >  NC_000913/4215173‑4215645                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                       aTACGATCTACGGCAAATGAATCCCACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAAGCCCCTTCGGGTGCATTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAATTGAGTAGTCTTAGggaaggggcgaataagcggggaa                                                                                                                                                                                                                                 <  2:451827‑M2/250‑24 (MQ=255)   aCGATCTACGGCACATGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaatt                                                                                                                                                                                                                              >  1:330876‑M2/1‑225 (MQ=255)                caTGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTAAAGCGATTCAGCACCTTACCTCAGGCAACTTCGGGTGCCTTTTTTATTTCCGAAAAGTACCTCAGCAGGTGAATAAATTTTATTCATCTTGTTATCAACAAGTTATCAAGTATTTTTAATTAAACTGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggcattttttctcggctgac                                                                                                                                                                                                                 <  2:32319‑M2/251‑40 (MQ=255)                                        ttctGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt                                                                                                                                                                                         <  2:219392‑M2/251‑64 (MQ=255)                                            gtgATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGTTGTGCTGAACGAAAAGAGCACAACGATCCGTCGTTCACAGTGGGGAAGTTTTCGGATCCATGa                                                                                                                                                                                        <  2:201396/248‑1 (MQ=255)                                                             aGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt                                                                                                                                                                    >  1:304575‑M2/1‑167 (MQ=255)                                                                    cAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc                                                                                                                                                              >  2:154135‑M2/1‑160 (MQ=255)                                                                       cACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttg                                                                                                                                                          <  1:159561‑M2/251‑95 (MQ=255)                                                                                      aCCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt                                                                                                                                             <  1:146271‑M2/249‑108 (MQ=255)                                                                                             ggTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgttt                                                                                                                                    <  1:165559‑M2/251‑117 (MQ=255)                                                                                                                     tACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccc                                                                                                            <  1:232959‑M2/251‑141 (MQ=255)                                                                                                                           agcagGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGGATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattattctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcacgtaaatgccttgaatcagcatatttagaccgtttcttcgccatttaaggcgttatccccagttt                                                                                                      <  2:316672‑M2/251‑147 (MQ=255)                                                                                                                               ggTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTGTTAATTAAAATGGAAATTGTTTTTTATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcctatgttttctcccgtaaatgccttgaatcagcctatttagaccgtttctgcgccatttaaggcggtatccccagtttttag                                                                                                  >  2:316800‑M2/1‑101 (MQ=255)                                                                                                                                                      gTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAACTTGTTTTTGATTTTGCCTTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcagattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagctctctcccactgacgtat                                                                           <  1:137238‑M2/251‑174 (MQ=255)                                                                                                                                                           caacaaGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttcgcggctgactcagtcatttcatttcttcatttttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctctcactgacgtatcatt                                                                       >  1:84824‑M2/1‑73 (MQ=255)                                                                                                                                                                      cAAGTATTTTTAATTAAAATGGAAATTGTTTATGATTTTGCATTTTAAATGAGTAGTATTAGggaaggtgcgaataagcggggaaattcttctcagctgactcagtcatttcattacttcatgtttgagccgattttttctcccgtaaatgacttgaatcagcctatttagaccgtttcttcgccatttaaggcgatatccccagtttttagtgagatctctcccactgccgtatcatttggtccgcccg                                                            <  1:286715‑M2/250‑189 (MQ=255)                                                                                                                                                                                 aattaaAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggc                                                <  1:115972‑M2/251‑201 (MQ=255)                                                                                                                                                                                     aaaaGGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctgcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatgtaaggcgttatccccagttgttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagc                                            >  2:352875‑M2/1‑47 (MQ=255)                                                                                                                                                                                         tGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtg                                         <  1:429210‑M2/250‑208 (MQ=255)                                                                                                                                                                                            aaaTTGTTTTTGATTTTGCATGTTAAAGGAGTAGTCTGAGgtaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcagttcttcatgtttgtgcctattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtgatccccagtttttagttagatctctcccactgacgtatcatgtggtccgccctaaacatgttggccagcgtgaata                                     >  2:23693‑M2/1‑40 (MQ=255)                                                                                                                                                                                                tgtgTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctgcatgtttgagctgattttttctcccgtaaatgccttgaatcatcctatttagaccggtacttcgccatttaaggcgttatccccagtttttagtgagatctcgcccactgacgtgtcatttggtccgcccgaaacaggttggccagcgtgaataaca                                  >  1:298630‑M2/1‑36 (MQ=255)                                                                                                                                                                                                 gTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatc                                <  1:250440‑M2/251‑217 (MQ=255)                                                                                                                                                                                                    tttGATTTTGCATTTGAACTGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgaatcagtcatttcatttcttcatgtttgagccgaatttttctcccgtaaatgccttgcatcaacctatttagaccgtttcttcgcaatttaaggcgtaatacccagtttttagtgagatctctaccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaatagcataggc                             <  2:99527‑M2/251‑220 (MQ=255)                                                                                                                                                                                                     ttGATTTTGCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgcc                             >  1:219392‑M2/1‑31 (MQ=255)                                                                                                                                                                                                             gCATTTTAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttgtccagcgtgaataacatcgccagttggtt                     <  1:223644‑M2/250‑228 (MQ=255)                                                                                                                                                                                                                ttttAAATGAGTAGTCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcg                 <  1:447297‑M2/251‑232 (MQ=255)                                                                                                                                                                                                                     aaTGATTAGTCTTAGTTGTGCGGAACTAAAAGAGCACAACGATCCTGCGTTCACAGTGGGGAAGTTTTCGGATCCATGACGAGGAGCTGCACGATGACTGAACAGGCAACAACAACCGATGAACTGGCTTTCACAAGGCCGTATGGCGAGCAGGAGAAGCAAATTCTTACTGCCGAAGCGGTAGAATTTCTGACTGAGCTGGTGACGCATTTTTCGCCACGACGCAAGAAACTTCTGGCAGCGCGCATTca            <  2:359473/251‑1 (MQ=255)                                                                                                                                                                                                                         agtagtCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtttttcagc        <  1:237169‑M2/251‑241 (MQ=255)                                                                                                                                                                                                                            agtCTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtttttcagcaac     <  1:285680‑M2/251‑244 (MQ=255)                                                                                                                                                                                                                               cTTAGggaaggtgcgaataagcggggaaattcttatcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgatatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtttttcagcaacccc  <  1:429025‑M2/251‑247 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                       ATACGATCTACGGCACATGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAGTCTTAGTTGTGCTGAACGAAAAGAGCACAACGATCCTTCGTTCACAGTGGGGAAGTTTTCGGATCCATGACGAGGAGCTGCACGATGACTGAACAGGCAACAACAACCGATGAACTGGCTTTCACAAGGCCGTATGGCGAGCAGGAGAAGCAAATTCTTACTGCCGAAGCGGTAGAATTTCTGACTGAGCTGGTGACGCATTTTACGCCACAACGCAATAAACTTCTGGCAGCGCGCATTCAGCAGCAGCAA  >  NC_000913/4215173‑4215645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.