New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	28 (0.690)	28/496	0.4	93.3%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 4215399	2 (0.050)					intergenic (+190/‑79)	metA/aceB	homoserine O‑succinyltransferase/malate synthase A

CGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAG  >  NC_000913/2288687‑2289157                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                               cGTCATTCAATACTGAGTATTCTGCGGAGCCATTCATTTCAATGTACTGATACTCTCCGTTAATTTCAGTATTATCACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTCTTGGCGGTACCATAAACCAACTGGCTCCCTTTTTTCAGGACCACACCCTCACCTGTCTCACCATACCCAACAATTAGTGCCAACTCCATGCGTGAATATAAGGAAGGGGGGAATAAACgg                                                                                                                                                                                                                              >  2:420136/1‑251 (MQ=255)   tCATTTTATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAAACAGCTGGATATCTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCCACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGGATAAGCgggg                                                                                                                                                                                                                            >  1:122154/1‑251 (MQ=255)                     tCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATAAAACAGCTGGATATCTTTTTCCAGGACAAAACCCTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGGATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                                                                                                                                                                          >  1:349242/1‑251 (MQ=255)                          ggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCCTTAACCAGCTGGATATCTTTTTCCCGGACAACACCATCAACACTCTCACCATCCTCAACAGTTGCTGCCCATGCTATGTGTGTATATCAGGAACGGGCGAGTAAACAGGGGAATTCTTTTCCGCTggataagt                                                                                                                                                                                                     >  2:296796/1‑244 (MQ=255)                          ggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCTGGATATCTTTTTCCAGGACAACACCATCAAATGTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGCATATAAGGAAGGGGCGAATAAGCGGGGGAATTCTTCTCGGCTGGCTCAGt                                                                                                                                                                                                     >  1:422138/1‑251 (MQ=255)                             gacatgtattTCAATGAACTGTTGCCCTGCGTTAATTTCAGTATTAGTACGTACACCAAATTCTGTTATATGCTGTTCTCCGCCAGTATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACACCACCATCAACTGTCTCACCGTACTCAACAGTTGTTGCCAATTCTAGGGGTGAATATAAGGAAGGGTCGAATTAGCGGGGAAATGCTTCTCGGCTGTCTCAGtcat                                                                                                                                                                                                  <  2:24027/244‑1 (MQ=255)                                      ttCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                                                                                                                                                                          <  2:138305/250‑1 (MQ=255)                                            gTACTGATTCCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                                                                                                                                                                    <  1:370799/250‑1 (MQ=255)                                                              aaTTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCACATAAACCAGCTGGATATCTTTTTCCAAGACAACACCCTTAAATGTCTCACCATACTCCACAGTTGATGCCAACGCTATGGGTGAATATAAGGAAGGTGCGGATAAGCGGGGAAATTCTTCTCGGCTGAATCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                                                                                                                                                                 >  1:153486/1‑251 (MQ=38)                                                                                tacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATAATTTTTTTCAGGACAACACCCTCAACTATCTCACCCTACTCAACAGTTGATGCCCATGCTTTGGGTGACTATTAGGGAGGGGCGAATAAGCGGGGGAATTCTTCTCGGCTGGCTCAGTCATTTTAATTCTTTATGTTTGAGCCGCTTTTTTCTTTCGTAAATTGCTTGAATc                                                                                                                                               >  1:37967/1‑251 (MQ=255)                                                                                 acacCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATc                                                                                                                                               >  1:80837/1‑250 (MQ=255)                                                                                                 tatGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGGACCATAAACCAGCTGGATATCTTTTTTCAGGACAACACCATCAACAGTCTCAACACACTAAACAGTTGATGCCAATGCTATGGGGGAATAAAAGGAAGGTGCGAATAAGCGGGGAAATTATTCTCGGATGACTCAATTATTTCATTTCTTCATGTTTGAGCCGATTTTTTTTCCCGTAAATTCCTTAAATAAGCCTATTTAGAACGtt                                                                                                                              >  1:180869/1‑251 (MQ=25)                                                                                                                cAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGGCTCAGTCATTTTATTTCTTCCTGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCCGCCTATTTAGACCGTTTCTTCGCCATTTa                                                                                                                 >  1:304226/1‑249 (MQ=255)                                                                                                                          tttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc                                                                                                      <  1:373756/250‑1 (MQ=255)                                                                                                                                      ggCGGTCCCACAACACAGCTGGATATATGTTACCAAGACAACACCATCAACTGTCTCACCATTCTCAACAGTTGATGCAAATGCTATGGGTGAATATAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTCAGTCATTTCATTTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCTTGAATCATCCTATTTAAACCGTTTCTTCGCCATTTAAGGCGTTTTCCCCAGTTTTTAGt                                                                                          <  2:290754/250‑1 (MQ=18)                                                                                                                                            cccATAAACCACCAGGATATCTTTTTCCAGCACAACACCATCCACTGTCTCCCCATACTCAACAGTTGATGCCAATGCTATTGGAGAATATACGAAAGGTGCGCATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATGTCTTCATGTTTGAGCCGATTTTTTCTCCCGCAAATGCCTTGAATCAGCCGATTTAGACCGTTTCTTCGCCATTTATGGCGTTATCCCCAGTTTTTAGTGAGAtct                                                                                   >  2:170630/1‑251 (MQ=18)                                                                                                                                                  aaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTccc                                                                              >  1:316355/1‑250 (MQ=255)                                                                                                                                                          ggATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGGTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACg                                                                       <  1:428032/249‑1 (MQ=255)                                                                                                                                                                  tgttCCTGGACAACACCATCGACTGTCTCACCATACTCAACAGTTGATGCCAATGCTTTGGGTGAATATAAGGAATGTGCGAATTAGCGGTGAAATTCTTCTCTGCTGATTCAGTCATTTCATTGCTTCAGGTTTGAGCCGATTTTTGCTCCCGGAAATGCCTTGAATCAGCCTTTTGAGTGCGTTTCTGCGCCATTTAAGTCGTTATGCCCATGTTTTAGTGAGACCTCTCCCACTGACGTCTCAttt                                                               <  2:278697/247‑1 (MQ=255)                                                                                                                                                                    ttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTc                                                           >  1:174250/1‑251 (MQ=255)                                                                                                                                                                             aacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCTTTAGCCCGAGGTTTTAGTGAGAGCTCGCCCACTGACGTATCAGTTGGTCCGCCCGaaa                                                  <  1:420136/251‑1 (MQ=17)                                                                                                                                                                                                     cTCAACAGTTGATGCCAATGCTATGGGGGCATATAAGGAAGGCGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCTCTGACGTATCATTTGGTCCGCCCGACACAGGTTGGCCAGCGTGAATAACAt                          >  2:210409/1‑251 (MQ=255)                                                                                                                                                                                                                aTGCCAATGCAATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGTCTCAGTCATTTCATTTCATCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCATTGAATCAGCCTATTTAGACCGTTTATTCGCCATTTAAGGCGCTATCCCCAGTTTTTAGGGAGGTCTCTCCCAATGACGTATCATTTGGTCCGCCCGATACAGATTGGCCAGAGTGAATAACATCGCCAGTTggg               >  2:241672/1‑250 (MQ=11)                                                                                                                                                                                                                  gCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGtt              <  2:304226/250‑1 (MQ=39)                                                                                                                                                                                                                             gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAg  <  1:438968/251‑1 (MQ=33)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                               CGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAG  >  NC_000913/2288687‑2289157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.