mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,429,692 | 0 | T | A | 66.7% | 3.8 / 11.4 | 16 | L215Q (CTA→CAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,571 | 0 | C | T | 64.3% | ‑2.8 / 10.4 | 14 | E105E (GAG→GAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,702 | 0 | A | C | 58.8% | 0.1 / 11.3 | 17 | A218A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,708 | 0 | A | G | 58.8% | 7.8 / 10.0 | 17 | T220T (ACA→ACG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,597 | 0 | C | A | 58.8% | ‑4.8 / 15.8 | 17 | V97F (GTT→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,724 | 0 | A | G | 57.1% | ‑6.5 / 11.0 | 14 | T226A (ACC→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,598 | 0 | T | G | 53.8% | 1.6 / 12.0 | 13 | S184A (TCA→GCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,747 | 0 | G | C | 53.8% | ‑2.3 / 13.1 | 13 | A233A (GCG→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,753 | 0 | G | A | 53.8% | ‑5.2 / 13.0 | 13 | S235S (TCG→TCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,160 | 0 | C | G | 53.3% | 1.2 / 17.0 | 17 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 566,651 | 0 | T | C | 47.1% | ‑6.4 / 20.2 | 17 | intergenic (‑673/‑33) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 1,429,164 | 0 | C | G | 46.7% | ‑1.5 / 18.1 | 15 | A39G (GCC→GGC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,780 | 0 | A | G | 46.7% | ‑3.6 / 12.7 | 15 | E244E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,783 | 0 | G | A | 46.7% | ‑6.4 / 14.9 | 15 | A245A (GCG→GCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,661 | 0 | C | G | 46.2% | ‑3.5 / 18.0 | 13 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 566,245 | 0 | G | A | 44.4% | 6.1 / 13.6 | 18 | intergenic (‑267/‑439) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 1,428,978 | 0 | G | A | 43.8% | 1.8 / 13.5 | 16 | pseudogene (183/189 nt) | lomR | Rac prophage; protein LomR_1 |
| * | NC_000913 | 1,429,024 | 0 | A | C | 42.9% | ‑5.5 / 13.7 | 14 | intergenic (+40/‑25) | lomR/stfR | Rac prophage; protein LomR_1/putative prophage side tail fiber protein StfR |
| * | NC_000913 | 566,173 | 0 | C | G | 39.1% | 23.6 / 21.0 | 23 | intergenic (‑195/‑511) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 566,205 | 0 | T | C | 38.1% | 7.4 / 16.1 | 21 | intergenic (‑227/‑479) | intD/renD | putative integrase/protein RenD |