| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,302 | Δ695 bp | [endA] | [endA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090302 | 3090996 | 695 | 18 [0] | [0] 18 | [endA] | [endA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090301 | 0 (0.000) | 18 (1.080) | 16/290 | 0.1 | 100% | intergenic (+49/‑46) | yggI/endA | protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3090997 = | 0 (0.000) | coding (651/708 nt) | endA | DNA‑specific endonuclease I | |||||
GTGAAGGCCAGTACGGTCAATGCGCCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCA‑GGG‑CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATG > NC_000913/3090777‑3091203 | cccgcccgtcgtacgcatcatttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgatgccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaagaaccatctgaactagcattaactgtcctgatctggctgatttcataccaaaGGTGCA‑GGGCCAATCATAACCCGTatgtgn < 1:86846‑M2/30‑2 (MQ=255) gctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCt > 1:337126‑M2/160‑251 (MQ=255) ccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTCACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg > 1:159705‑M2/150‑251 (MQ=255) tcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgatgtgttcactgcggtgaacagctggttgcgacataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACcgc > 1:211959‑M2/141‑251 (MQ=255) gccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCATGGC‑CAATCATAACCCTTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCttttt < 1:143904‑M2/82‑1 (MQ=255) gtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGc < 1:20625‑M2/41‑1 (MQ=255) nnctgtgtnnactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGG‑c < 2:14520‑M2/10‑1 (MQ=255) cgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGG‑c > 1:14520‑M2/89‑98 (MQ=255) tnngagctgnntgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTAtgtg < 2:30035‑M2/29‑1 (MQ=255) gaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcagaccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACAGTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATTCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGcc < 1:359132‑M2/181‑1 (MQ=255) ggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTAtgtg > 1:30035‑M2/63‑91 (MQ=255) cgaaatcaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATCACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAAc > 1:96928‑M2/58‑145 (MQ=255) gaaataaccatctgaactatcaggaactttcctgctctggctgattgcatacaaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCCGGCGCGaa > 1:391874‑M2/57‑107 (MQ=255) ccatcttaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑g < 1:241950‑M2/7‑1 (MQ=255) ccatcnganntannaggnactttcctgatctggctgattgcataccaaaGGTGnan > 2:241950‑M2/50‑55 (MQ=255) gaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCCATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGACCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGCCGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGCACCACTGACCAGCCATTCTCACATCGCGCTTTGCGACGATg > 1:377487‑M2/44‑251 (MQ=255) ggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTCACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTCCCACCGCGTgggg > 1:432256‑M2/19‑135 (MQ=255) ctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGACAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAc > 1:202982‑M2/17‑115 (MQ=255) | GTGAAGGCCAGTACGGTCAATGCGCCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCA‑GGG‑CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATG > NC_000913/3090777‑3091203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |