| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,302 | Δ695 bp | [endA] | [endA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090302 | 3090996 | 695 | 18 [0] | [0] 18 | [endA] | [endA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090301 | 0 (0.000) | 18 (1.080) | 16/290 | 0.1 | 100% | intergenic (+49/‑46) | yggI/endA | protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3090997 = | 0 (0.000) | coding (651/708 nt) | endA | DNA‑specific endonuclease I | |||||
CCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGC > NC_000913/3090082‑3090509 | cccgcccgTCGTACGCATCATTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGATGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAAGAACCATCTGAACTAGCATTAACTGTCCTGATCTGGCTGATTTCATACCAAAggtgcagggccaatcataacccgtatgtgn < 1:86846‑M1/250‑31 (MQ=255) gCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgccaggcgcgaaagagctaacctacactagcgggattctttttgttaacccct > 1:337126‑M1/1‑159 (MQ=255) ccAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgccaggcgcgaaagagctcacctacactagcgggattctttttgttaacccctaccccacgcg > 1:159705‑M1/1‑149 (MQ=255) tCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGATGTGTTCACTGCGGTGAACAGCTGGTTGCGACATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgccaggcgcgaaagagctaacctacactagcgggattctttttgttaacccctaccccacgcgtacaaccgc > 1:211959‑M1/1‑140 (MQ=255) gccATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcatggccaatcataacccttatgtgcaacgcgcttgccaggcgcgaaagagctaacctacactagcgggattcttttt < 1:143904‑M1/205‑83 (MQ=255) gTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgc < 1:20625‑M1/146‑42 (MQ=255) nnctgTGTNNACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggc < 2:14520‑M1/96‑11 (MQ=255) cGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggc > 1:14520‑M1/1‑88 (MQ=255) tnngagctgNNTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtg < 2:30035‑M1/95‑30 (MQ=255) gAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCAGACCAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgccaggcgcgaaagagctaacctacagtagcgggattctttttgttaacccctaccccacgcgtacaaccgcgtggggagacgacgcggatttttaactattcgtatcccccgcatttatcatcctgaaccactgaccagcc < 1:359132‑M1/251‑182 (MQ=255) ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtg > 1:30035‑M1/1‑62 (MQ=255) cGAAATCACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggccaatcatcacccgtatgtgcaacgcgcttgccaggcgcgaaagagctaacctacactagcgggattctttttgttaac > 1:96928‑M1/1‑57 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGCTCTGGCTGATTGCATACAAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgcccggcgcgaa > 1:391874‑M1/1‑56 (MQ=255) ccATCTTAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcag < 1:241950‑M1/56‑8 (MQ=255) ccATCNGANNTANNAGGNACTTTCCTGATCTGGCTGATTGCATACCAAAggtgnan > 2:241950‑M1/1‑49 (MQ=255) gAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAggtgcagggcccatcataacccgtatgtgcaacgcgcttgccaggcgcgaaagacctaacctacactagcgggattctttttgttaacccctaccccacgcgtacaaccgcgtggggagccgacgcggatttttaactatgcgtatcccccgcatttatcatcctgcaccactgaccagccattctcacatcgcgctttgcgacgatg > 1:377487‑M1/1‑43 (MQ=255) ggCTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgccaggcgcgaaagagctcacctacactagcgggattctttttgttaacccctaccccacgcgtcccaccgcgtgggg > 1:432256‑M1/1‑18 (MQ=255) cTGATTGCATACCAAAggtgcagggccaatcataacccgtatgtgcaacgcgcttgccaggcgcgacagagctaacctacactagcgggattctttttgttaacccctaccccac > 1:202982‑M1/1‑16 (MQ=255) | CCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGC > NC_000913/3090082‑3090509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |