New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	12 (0.710)	7 (0.470)	6/262	0.7	41.5%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	9 (0.600)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

GAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGA  >  NC_000913/1209361‑1209851                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                          gAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTcc                                                                                                                                                                                                                                                   <  1:170646/250‑1 (MQ=255)  aGCATGATCCTCCGTATCATACCCCTGAATACTTAAAATAGAGCTCCCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCTCCTCGTAAATCAGGCAATTTATTTGGCGTATAAGCCATTGCCAGGTCCGTGTATTCGTCAGCAGAAAATGCGGCACCTGTGCATTTCAGCCATCTTTTGGGCTTTTTGGCTGAAGGCCTCTTAACCGGGACACCAACAGGTAATGCAGAGCCTTTTCCCa                                                                                                                                                                                                                                                 <  1:318081/251‑1 (MQ=255)                    aTACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATCGCATTTCAGCCAGCCGGTTGGCAGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                                                                                                                                                                                               >  1:379258‑M2/1‑223 (MQ=255)                                            gCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACACCGTAAATCAGGCAATTTATTTATCGGATACGACTTTGCCCGTTCCGGGTATTCTTCAGCAGACAAAGCGGCACCATTGCCTTTCAGCAAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGTTTATGAAAATGAAGAACTAACAAGAAAATg                                                                                                                                                                                                          >  1:309152/1‑248 (MQ=255)                                                                        nnnnnnncNCGNNTAAANCCACCACGGAAATCAGGCAATTTANTTGTCGGATAAGCCGTTGCCAGTTCCGGGTANTNTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGNGTGGCTGAAGNCCANNGAACNGNGNCACCAACAGGTAATGCAGAGCCTTCGCCCNAACCAACGTTTATGAAAATGAAGNNATNNNATNNAAATg                                                                                                                                                                                                          <  2:309152/213‑1 (MQ=255)                                                                         nccaGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                                                                                                                                                                                                     <  1:44933‑M2/207‑39 (MQ=255)                                                                                      aaaCTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgc                                                                                                                                                             >  1:238174‑M2/1‑157 (MQ=255)                                                                                                                        ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                                                                                                                             >  1:137732/1‑249 (MQ=255)                                                                                                                                                                                                ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagcgccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                                                                                                                                          <  1:186688‑M2/164‑114 (MQ=255)                                                                                                                                                                                                 gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgca                                                                         <  1:229007‑M2/228‑179 (MQ=255)                                                                                                                                                                                                    gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCg                                                >  1:392240/1‑250 (MQ=255)                                                                                                                                                                                                         gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggt                                          <  1:339373‑M2/251‑210 (MQ=255)                                                                                                                                                                                                             aaGGCNNCGNNNCCNNGACACCAACAGGTAATGCAGAGCNTTCTCCCAAACCAACGTTTATGAAAATGANGNANTAACNNGCANATGGCATCATNCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTNTNAACAAATGACCAGAACACAGATCTACAACGTNATGCGCTGAACTGTGCAGGATGCGNGCTGNnttnt                                                                            >  2:316669/1‑213 (MQ=255)                                                                                                                                                                                                             aaGGCCACGGAACCGGTACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGTCTATGTACGCGTATCAACAAATGACCAGAACACATATCTACAGCGTAATGCGCTGAACTGTGCAGGATGCTAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTcc                                                 <  1:316669/240‑1 (MQ=255)                                                                                                                                                                                                                gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                                                                                                                                                                 <  1:390365/109‑1 (MQ=255)                                                                                                                                                                                                                gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                                                                                                                            >  1:297831/1‑114 (MQ=255)                                                                                                                                                                                                                gCCACGGAACCGGGACACCAACAGGNAATNCAGANCCNTCTCCCAAACCAACGNTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTNNTNNNANGGGGAttt                                                                                                                                                                            <  2:297831/114‑1 (MQ=255)                                                                                                                                                                                                                                                 agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatgtgatatcgccaaacggagtcttgcggcttaacagcagcgcgcgaagtgcggtaaggaactggtcgtgccgccccttctccaggctggcagctgatgcctccaccacgctgcaaagttcctccttcaacattacaaagtagtcatcatccagatcggtggcaggtgtgccggtctgggggttaccacgggtaaaaccg  >  1:164845‑M2/1‑2 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                          GAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGA  >  NC_000913/1209361‑1209851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.