New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	12 (0.710)	7 (0.470)	6/262	0.7	41.5%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	9 (0.600)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

CGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGG  >  NC_000913/1207557‑1208044                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                cGGTTTTACCCGTGGTAACCCCCAGACCGGCACACCTGCCACCGATCTGGATGATGACTACTTTGTAATGTTGAAGGAGGAACTTTGCAGCGTGGTGGAGGCATCAGCTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTCCTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct                                                                                                                                                                                                                                               >  1:164845‑M1/1‑249 (MQ=255)   nttttACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                                                                                                                                              >  1:260642/2‑250 (MQ=255)                          gtttttgcagtcccggcctttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                                                                                                                                >  1:148917‑M1/209‑241 (MQ=255)                                         aCCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc                                                                                                                                                                                                       <  1:339373‑M1/251‑43 (MQ=255)                                             ttcggactttgtgcctcttatcttgtcttcaaaaatcatctcgcatcctgcacagttcagcgcattacgttgtagatctgtggtctggtcatttgttgatacgcgtacatagccaataaccctgttaaatccccctgttaaaagcaggaatgatgccattttcgtgttatttcttcattttcataatcgTTGGTTTGGTAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                                                                                                                     >  1:157965‑M1/190‑249 (MQ=255)                                               cggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttctacatcttcttaaacgTTGGTTTGGGATAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                                                                                                                 >  1:409635‑M1/188‑251 (MQ=255)                                                                      gTTGCAGGAGGAACTTTTCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGTACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                                                                                                                          <  1:314425/251‑1 (MQ=255)                                                                        tGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc                                                                                                                                                                                               <  1:229007‑M1/228‑51 (MQ=255)                                                                                gaACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                                                                                                                            <  1:386468/239‑1 (MQ=255)                                                                                     ttGCAGCGGGGTGGAGGCATCCGGTGCCTGCCTGGAGAAGGGGCTGCACGCCCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAATGCGCAAAACTCAATTCAGCAACGGCTACATTATGACTCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                                                                                                                            <  1:369150/250‑1 (MQ=25)                                                                                      cgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa                                                                                                                                                                                                                                             <  1:168556‑M1/20‑1 (MQ=255)                                                                                                                              gttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCtgn                                                                                                                   >  1:103759‑M1/109‑249 (MQ=255)                                                                                                                              gttctggtcatttgttgatacgcgtacatagccaataagcatattaaatcgccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCATCGGTTTCATAGCGATACCGGTTATGATTGGTGTTATTGAGCAATCAGTAATCATTCAGTTGGTGTGTAATGCCGCAAAAGCATCTGcc                                                                                                                  >  1:352505‑M1/109‑251 (MQ=255)                                                                                                                                      catttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg                                                                                                           >  1:206189‑M1/101‑250 (MQ=255)                                                                                                                                         cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc                                                                                                                                                                                              <  1:186688‑M1/164‑52 (MQ=255)                                                                                                                                                 acgcgtacatagccaataagcatattaactccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGc                                                                                                                                                                 <  1:33956‑M1/96‑1 (MQ=255)                                                                                                                                                       acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgattgttatttcttcattttcatacacgTTGGTTTGGGAGAAGGAGCaa                                                                                                                                                                                                                                            <  1:236403‑M1/21‑1 (MQ=255)                                                                                                                                                            gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagttt                                                                                    >  1:238174‑M1/1‑94 (MQ=255)                                                                                                                                                                            ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                                                                                                                                              >  2:29310/1‑81 (MQ=255)                                                                                                                                                                            ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                                                                                                                                              <  1:29310/81‑1 (MQ=255)                                                                                                                                                                               ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGACGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                                                                                                                 <  1:347404‑M1/64‑1 (MQ=255)                                                                                                                                                                                      gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCctgtgn                                                          >  1:103226‑M1/53‑250 (MQ=255)                                                                                                                                                                                               ggaatgatgccatttgcttgttagttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTATCAGAGCTATACCGGTTATGATTGGTTGTATTTATCAATCAGTAATCATTCAGTGTGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCgttgt                                                 >  1:416615‑M1/44‑251 (MQ=255)                                                                                                                                                                                                         cGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCGCggggggn                                                                                                         <  1:113099/185‑2 (MQ=255)                                                                                                                                                                                                                    gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctggn                                                                       <  1:44933‑M1/208‑171 (MQ=255)                                                                                                                                                                                                                         aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTACTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGttgttg                                               <  1:28098/227‑1 (MQ=255)                                                                                                                                                                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactctgccaaccggctggctgaaatgcgatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctattttaagtattcaggggtat                  >  1:379258‑M1/1‑28 (MQ=255)                                                                                                                                                                                                                                            ggTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                                                                                                                                  <  1:94915/125‑1 (MQ=255)                                                                                                                                                                                                                                            ggTTTGGGAGAAGGAGCAAAACTCAANGCAGCANNGGNTACATTAGGACGCACCGGTNTCNNNGNNNTNACGGTNATNNTTGGTGGTANTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                                                                                                                                  >  2:94915/1‑125 (MQ=255)                                                                                                                                                                                                                                              tttaggAGAAGAAGCAAAACTCAATGCAGCAACGGCAACATTAGGACGAACCGGTTTCATAGCTATAACGGTAATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGACGGAAATACAGTTGTATTCCAGGTTGCGTTTAATAATGACTGTGTTGCGGTTATTGCAAGTTATGACAATGTCAGCGCAACTATCAATGCAGTGGCACCgg  >  1:155396/5‑251 (MQ=255)                                                                                                                                                                                                                                                  ggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTcc                                                                                   <  1:74770/166‑1 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                CGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGG  >  NC_000913/1207557‑1208044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.