New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	10 (0.590)	12 (0.800)	10/262	0.3	57.3%	coding (290/630 nt)	ycfK	protein StfP
	?	NC_000913	1209619 =	9 (0.600)					intergenic (‑500/‑66)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

GCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGG  >  NC_000913/1209404‑1209859                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                 gCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACACCGTAAATCAGGCAATTTATTTATCGGATACGACTTTGCCCGTTCCGGGTATTCTTCAGCAGACAAAGCGGCACCATTGCCTTTCAGCAAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGTTTATGAAAATGAAGAACTAACAAGAAAATg                                                                                                                                                                                                                  >  1:309152/1‑248 (MQ=255)        acaacggcaacacaggcattattaaacgcaaccgggaatacaactgtatttccatcccccccagaggcagatgcttttgcggcattccacccacactgaatgattactgattgataaatacaaccaatcataaccggtatagctctgataccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTcc                                                                                                                                                                                                        >  1:416615‑M2/209‑251 (MQ=255)                 ncacaggcattattaaacgcaaccgggaatacaactgtatttccatcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc                                                                                                                                                                                               >  1:103226‑M2/200‑251 (MQ=255)                             nnnnnnncNCGNNTAAANCCACCACGGAAATCAGGCAATTTANTTGTCGGATAAGCCGTTGCCAGTTCCGGGTANTNTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGNGTGGCTGAAGNCCANNGAACNGNGNCACCAACAGGTAATGCAGAGCCTTCGCCCNAACCAACGTTTATGAAAATGAAGNNATNNNATNNAAATg                                                                                                                                                                                                                  <  2:309152/213‑1 (MQ=255)                                                                  ccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg                                                                                                                                               >  1:206189‑M2/151‑250 (MQ=255)                                                                         ggcagatgcttttgcggcattacacaccaactgaatgattactgattgctcaataacaccaatcataaccggtatcgctatgaaaccgatgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccacaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGCGATTTAATATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                                                                                                                                       >  1:352505‑M2/144‑251 (MQ=255)                                                                          ncagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                                                                                                                                       >  1:103759‑M2/143‑250 (MQ=255)                                                                             ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                                                                                                                                     >  1:137732/1‑249 (MQ=255)                                                                                                                        gctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAATATGCTTATTGGCTATGTACGCGt                                                                                                                                                          <  1:33956‑M2/89‑1 (MQ=255)                                                                                                                                                        atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttatcccaaaccaaCGTTTAAGAAGATGTAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCg                                                        >  1:409635‑M2/65‑251 (MQ=255)                                                                                                                                                        atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccgtctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                                                                                                                                                                        <  1:347404‑M2/59‑1 (MQ=255)                                                                                                                                                         gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCg                                                        >  1:392240/1‑250 (MQ=255)                                                                                                                                                            aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctaccaaaccaaCGATTATGAAAATGAAGAAATAACACGAAAATGGCATCATTCCTGCTTTTAACAGGGGGATTTAACAGGGTTATTGGCTATGTACGCGTATCAACAAATGACCAGACCACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGATGATTTTTGAAGACAAGATAAGAGGCACAAAGTCCGaa                                                      >  1:157965‑M2/61‑249 (MQ=255)                                                                                                                                                                  aaGGCNNCGNNNCCNNGACACCAACAGGTAATGCAGAGCNTTCTCCCAAACCAACGTTTATGAAAATGANGNANTAACNNGCANATGGCATCATNCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTNTNAACAAATGACCAGAACACAGATCTACAACGTNATGCGCTGAACTGTGCAGGATGCGNGCTGNnttnt                                                                                    >  2:316669/1‑213 (MQ=255)                                                                                                                                                                  aaGGCCACGGAACCGGTACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGTCTATGTACGCGTATCAACAAATGACCAGAACACATATCTACAGCGTAATGCGCTGAACTGTGCAGGATGCTAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTcc                                                         <  1:316669/240‑1 (MQ=255)                                                                                                                                                                     gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                                                                                                                                                                         <  1:390365/109‑1 (MQ=255)                                                                                                                                                                     gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                                                                                                                                    >  1:297831/1‑114 (MQ=255)                                                                                                                                                                     gCCACGGAACCGGGACACCAACAGGNAATNCAGANCCNTCTCCCAAACCAACGNTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTNNTNNNANGGGGAttt                                                                                                                                                                                    <  2:297831/114‑1 (MQ=255)                                                                                                                                                                                       ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGCAAAAAc                                   >  1:148917‑M2/34‑241 (MQ=255)                                                                                                                                                                                                   ttgctccttctcccaaaccaaCGTGTATGAAAATGAAGAAATAACAATCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt                                                                                                                                                                <  1:236403‑M2/83‑1 (MQ=255)                                                                                                                                                                                                    tgctcnTTCTCNCNNACCACCGTTTCTGAAAATGNAGAAATAACAAGCAANTGGCNTCATtnctncn                                                                                                                                                                                                    >  2:168556/5‑66 (MQ=255)                                                                                                                                                                                                    tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCg                                                                                               <  1:168556‑M2/148‑1 (MQ=255)                                                                                                                                                                                                        ccTTCTCCCAAACCCACGTTTATGAAAATGAAGCAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGac         >  1:118875/1‑250 (MQ=255)                                                                                                                                                                                                              cccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCGACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGAGAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTgg  <  1:427842/251‑1 (MQ=255)                                                                                                                                                                                                                      aaCGTTGATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAGTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAg                                                                                <  1:387603/165‑1 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                 GCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGG  >  NC_000913/1209404‑1209859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.