New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	10 (0.590)	12 (0.800)	10/262	0.3	57.3%	coding (290/630 nt)	ycfK	protein StfP
	?	NC_000913	1209619 =	9 (0.600)					intergenic (‑500/‑66)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

GGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATC  >  NC_000913/1207549‑1208028                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                               ggTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCATGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                                                                                                                       <  1:167232/251‑1 (MQ=255)         cGGTTTTACCCGTGGTAACCCCCAGACCGGCACACCTGCCACCGATCTGGATGATGACTACTTTGTAATGTTGAAGGAGGAACTTTGCAGCGTGGTGGAGGCATCAGCTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTCCTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct                                                                                                                                                                                                                               >  1:164845‑M1/1‑249 (MQ=255)           nttttACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                                                                                                                              >  1:260642/2‑250 (MQ=255)                                  gtttttgcagtcccggcctttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                                                                                                                >  1:148917‑M1/209‑241 (MQ=255)                                                 aCCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc                                                                                                                                                                                       <  1:339373‑M1/251‑43 (MQ=255)                                                     ttcggactttgtgcctcttatcttgtcttcaaaaatcatctcgcatcctgcacagttcagcgcattacgttgtagatctgtggtctggtcatttgttgatacgcgtacatagccaataaccctgttaaatccccctgttaaaagcaggaatgatgccattttcgtgttatttcttcattttcataatcgTTGGTTTGGTAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                                                                                                     >  1:157965‑M1/190‑249 (MQ=255)                                                       cggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttctacatcttcttaaacgTTGGTTTGGGATAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                                                                                                 >  1:409635‑M1/188‑251 (MQ=255)                                                                              gTTGCAGGAGGAACTTTTCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGTACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                                                                                                          <  1:314425/251‑1 (MQ=255)                                                                                tGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc                                                                                                                                                                               <  1:229007‑M1/228‑51 (MQ=255)                                                                                        gaACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                                                                                                            <  1:386468/239‑1 (MQ=255)                                                                                           cTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTg                                                                                                                                                                                                                                         <  1:172277/159‑1 (MQ=255)                                                                                             ttGCAGCGGGGTGGAGGCATCCGGTGCCTGCCTGGAGAAGGGGCTGCACGCCCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAATGCGCAAAACTCAATTCAGCAACGGCTACATTATGACTCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                                                                                                            <  1:369150/250‑1 (MQ=25)                                                                                              cgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa                                                                                                                                                                                                                             <  1:168556‑M1/20‑1 (MQ=255)                                                                                                                                      gttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCtgn                                                                                                   >  1:103759‑M1/109‑249 (MQ=255)                                                                                                                                      gttctggtcatttgttgatacgcgtacatagccaataagcatattaaatcgccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCATCGGTTTCATAGCGATACCGGTTATGATTGGTGTTATTGAGCAATCAGTAATCATTCAGTTGGTGTGTAATGCCGCAAAAGCATCTGcc                                                                                                  >  1:352505‑M1/109‑251 (MQ=255)                                                                                                                                              catttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg                                                                                           >  1:206189‑M1/101‑250 (MQ=255)                                                                                                                                                 cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc                                                                                                                                                                              <  1:186688‑M1/164‑52 (MQ=255)                                                                                                                                                         acgcgtacatagccaataagcatattaactccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGc                                                                                                                                                 <  1:33956‑M1/96‑1 (MQ=255)                                                                                                                                                               acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgattgttatttcttcattttcatacacgTTGGTTTGGGAGAAGGAGCaa                                                                                                                                                                                                                            <  1:236403‑M1/21‑1 (MQ=255)                                                                                                                                                                    gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagttt                                                                    >  1:238174‑M1/1‑94 (MQ=255)                                                                                                                                                                                    ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                                                                                                                              <  1:29310/81‑1 (MQ=255)                                                                                                                                                                                    ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                                                                                                                              >  2:29310/1‑81 (MQ=255)                                                                                                                                                                                       ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGACGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                                                                                                 <  1:347404‑M1/64‑1 (MQ=255)                                                                                                                                                                                              gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCctgtgn                                          >  1:103226‑M1/53‑250 (MQ=255)                                                                                                                                                                                                       ggaatgatgccatttgcttgttagttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTATCAGAGCTATACCGGTTATGATTGGTTGTATTTATCAATCAGTAATCATTCAGTGTGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCgttgt                                 >  1:416615‑M1/44‑251 (MQ=255)                                                                                                                                                                                                                 cGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCGCggggggn                                                                                         <  1:113099/185‑2 (MQ=255)                                                                                                                                                                                                                            gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctggn                                                       <  1:44933‑M1/208‑171 (MQ=255)                                                                                                                                                                                                                                 aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTACTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGttgttg                               <  1:28098/227‑1 (MQ=255)                                                                                                                                                                                                                                      ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactctgccaaccggctggctgaaatgcgatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctattttaagtattcaggggtat  >  1:379258‑M1/1‑28 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                               GGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATC  >  NC_000913/1207549‑1208028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.