New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979337 =	0 (0.000)	9 (0.770)	8/304	0.2	100%	intergenic (‑122/‑416)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

TGTCATGATGAGCATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT  >  NC_000913/2101518‑2101983                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           ggTCATGATGAGCATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTGCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCggg                                                                                                                                                                                                                         <  1:143348/250‑1 (MQ=255)                                                aGTCTGACACCAGCCAGGCTAAGCCTGAAGCACAGGTCAATATCTTCACAGTGCAGAAACGAACCTTGATCGAATCCATTTACGCGCACAAAATCAGAAAAACGTACCAGCATAAAGGATCCTGCGCTCCAATCAACAGCCGTATCATAATAGATACTGCCTATAGGGTTTCATGGTTAACTAAAGAAAGTTCGAAGATGCGGGGAAATTCTTCGCGGCTTACTCAGTCATTTCATTTCTTCATGTTTGa                                                                                                                                                                           <  1:237521/250‑1 (MQ=255)                                                           agccagGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                                                                                                                               <  1:11260/251‑1 (MQ=255)                                                            gccagGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAANAACNTACCNGCNTAAATGATCCTGCGCNCCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTNNGNNNTNTGaaggaa                                                                                                                                                                                                                                         <  2:196817/176‑1 (MQ=255)                                                            gccagGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATATGAAAAACGTACCAGAATAAATGATCCTGCGCACCAATCAACACCCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaa                                                                                                                                                                                                                                         >  1:196817/1‑176 (MQ=255)                                                                 gCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATGTACACGCACAAAATCGGAAAAACGGACCAGCATAAATGATCCTGCGCACCAATCAACAACCGGAGCAGAATAGATACTTTCTTTAGGAATGTTTGTTTTATTAAGGAAGGTGCGAATAAGCggn                                                                                                                                                                                                                         <  1:28608/187‑2 (MQ=255)                                                                  cTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGNt                                                                                                                                                                                                                                      <  1:216525/173‑1 (MQ=255)                                                                      gCCTCACGCACAGGTCAATATCTTCAAAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACCACATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTCAGTCATTTCATTTCTTCATGTTTGCGCCGATTTTTTCTCCCGTAAATg                                                                                                                                                    >  1:209301/1‑251 (MQ=255)                                                                      gCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTTTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaattt                                                                                                                                                    >  1:201146/1‑248 (MQ=255)                                                                              cacaGGTCAATATCTTCACAGTACATAAAGTAACCTTGATAGAAGCCATTTACACCAACACCATCTGAAAAACGTCCCAGCATAAATGATCCTGCGCACAAATAAACACCCGAATCAGACTAGATACTTTCTTTAGGCATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAACTTCTTCTCGGCTGCCTCAGTCATTTCGTTTATTCCTGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAAt                                                                                                                                            >  1:177958/1‑251 (MQ=25)                                                                                   gTCAATATCTGCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATGCTTCTCGTCTGACTCATGCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGcc                                                                                                                                       <  1:193411/251‑1 (MQ=255)                                                                                                          aGTAACCTGGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTCCCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATTCTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCATTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt                                                                                                                <  1:5551/251‑1 (MQ=255)                                                                                                               ccTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCCTAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAANa                                                                                                                                                                                                                               >  2:167838/1‑135 (MQ=255)                                                                                                               ccTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCtn                                                                                                                                                                                                        <  1:167838/158‑2 (MQ=255)                                                                                                                        aaGCCNNTTNNNCGNNCAAAATCTGAAAAACGTACCAGCNTAAATGATCCTGCGCACCAATCAACAACCNTNTNAGAANNGATNCTTTCTTTAGNAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTNGNCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                                                                                                                            >  2:208207/1‑177 (MQ=255)                                                                                                                        aaGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                                                                                                                            <  1:208207/177‑1 (MQ=255)                                                                                                                           ncATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGCATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc                                                                                                >  1:79143/2‑250 (MQ=255)                                                                                                                                        caAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctcn                                                                                                                                                            <  1:55927/177‑2 (MQ=255)                                                                                                                                                gAAAAACGTACCATCATAAATGAGCCTGCGCACCAATCATCAACCGTATCAGAATAGATTCTTTCTTTAGGAATTTTTGTGTTATTAAGGAATGTGCGAATAAGCTGGGAAATTCTGCTCGTCTTCCTCAGTCATGTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCGTAAATGCCGTGAATCAGCTTAGTTAGATCGTTTCTTCGGCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAtctctc                                                                            <  1:186654/249‑1 (MQ=18)                                                                                                                                                gAAAAACGTAACAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc                                                                                                <  1:75089/229‑1 (MQ=255)                                                                                                                                                 aaaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                                         <  1:133632/251‑1 (MQ=255)                                                                                                                                                                       nnnnnnncnccnnccaanaaCCGGAGCAGAATAGATACTTTCNTTAGGAATTTTTGTTTTATTAAGGAAGGTGCNANTAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAGNTTGGAGCCGANTTTNNCTCCNGNANATGCCTTGAAGCAGCCTATTTAGACCGTTNCTTCGCCATTTAAGGCGTTATCCNNAGNNNTTNNTgaga                                                                                  <  2:209301/206‑1 (MQ=17)                                                                                                                                                                              cACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGaa                                                                                                                                                                                                                                 >  1:106968/1‑70 (MQ=255)                                                                                                                                                                              cACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCCGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAAc                                             >  1:42320/1‑250 (MQ=255)                                                                                                                                                                                ncAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAACTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAgg                                          >  1:29013/2‑251 (MQ=255)                                                                                                                                                                                                                    aGGAATTGTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCGCTCCCACTTGCGTATCATTTGTTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCg      <  1:181832/251‑1 (MQ=255)                                                                                                                                                                                                                        aTTTTTGTTTTAGTAAGGAAGGTGCGAATAAGCGGGGAAATTCCTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGTCCTTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTGTTAGTGAGAGCTCTGCCACTGACGTGTCATTTGGTCCGCCCGAAACATGGTGGCCAGCGTGAATAACATCGCCATTTGGTTATCGtttt  <  1:203309/251‑1 (MQ=11)                                                                                                                                                                                                                              gTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTcn                                                      <  1:67205/193‑2 (MQ=18)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           TGTCATGATGAGCATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT  >  NC_000913/2101518‑2101983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.