New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979337 =	0 (0.000)	9 (0.770)	8/304	0.2	100%	intergenic (‑122/‑416)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

CTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCA  >  NC_000913/1979090‑1979508                                                                                                                                                                                                                                                        |                                                                                                                                                                            aggggttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactgtggataacgccttaaatggcgaagaaacggtctaaataggctgattcaagtcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaaggactgagtcagccgagaagaatttccccgcttattcgcaccttccCTag                                                                                                                                                                          >  1:152202‑M1/248‑251 (MQ=255)                                                                                                            gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggcgaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgattattcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                                                                                                            <  1:254795‑M1/66‑1 (MQ=255)                                                                                                                  acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGc                                                         >  1:145613‑M1/135‑251 (MQ=255)                                                                                                                      nnnnnntgnnnnngaancggtctaaataggctgattcaaggcatttacgggagaaaaaatcgtctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcctattcgagccttccCTAGCAAGCAATAATGAAAc                                                                                                                                                          >  2:165044‑M1/131‑150 (MQ=255)                                                                                                                                             aaataggctgattcaaggcatttacgggagaaaaaataggctcaaacatgacgaactgaaatgaatgagtcagccgagaagaatttccccgcttattctcaccttccCTAGCAAGCAAAAATGAAAAAGGCATAATCGAAATGGGATGt                                                                                                                                    <  1:209744‑M1/42‑1 (MQ=255)                                                                                                                                             aaanangctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaaganatgaaatgacngagnnagccnanangaatttccccgcttattcgcaccttccCTNGCAAGCAAAAATGAAACAGGAATNNTCNNNATNNGATGt                                                                                                                                    >  2:209744‑M1/108‑149 (MQ=255)                                                                                                                                                   gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacagagtcagccgagaagaatttccccgcttattcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATACTCGAAATGGGATGTTGCGCACAGTCAAAATAACTCCCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc                        <  1:35768‑M1/150‑1 (MQ=255)                                                                                                                                                                          naaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGca  <  1:70981‑M1/172‑1 (MQ=255)                                                                                                                                                                                       caaacatgaagaaatgcaatgactgcgtcagccgagaagaatttccccgcttattcgcaccttccCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGCTGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCa                                                                          <  1:91228‑M1/100‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                            CTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCA  >  NC_000913/1979090‑1979508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.