New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2280603 =	0 (0.000)	12 (1.030)	10/304	0.1	100%	intergenic (‑120/‑29)	rsuA/radD	16S rRNA pseudouridine(516) synthase/putative DNA repair helicase RadD
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

ATTACGGACGATTTCGCCATCGACGGTGACACGATTGCCGCGGATTTCACGCCCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCTGAACTGTTGTCTGCCCAGTATAGCGGTCTAATAACATCCCTCAAGGGAAAAAGATCCATGGCATACTATTAGCAGAATAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACGGCTGGCTCGTGGTCGCGTGCTGGTGCTGGCACACGTTAAAGAACTGGTGG  >  NC_000913/2280376‑2280818                                                                                                                                                                                                                                    |                                                                                                                                                                                                                        tcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCAGAATAATCTACCTAcgcg                                                                                                                                                                                                  <  1:112900‑M1/24‑1 (MQ=255)                                             ccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgacggcgaaggtaagttgatgactcatgatgaacccttttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctgccTTAGCAGAATAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCa                                                                                                                                                                   >  1:273903‑M1/184‑238 (MQ=255)                                                  atgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCAGAATAAGCTACCGACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGc                                                                                                                                                 >  1:142697‑M1/179‑251 (MQ=255)                                                            atggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCAGAATAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAAc                                                                                                                                       >  1:9964‑M1/169‑251 (MQ=255)                                                                           ccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCAGAATAATCTACCTACGCGAGACCATGATTTTTac                                                                                                                                                                                  >  1:11264‑M1/154‑193 (MQ=255)                                                                                       ngaaaatctcttttctggtctgacggcgcttactgctgaattcactgttggcgaaggtaagttgatgactcatgatgcaccctgttctatggctcccgatgacaaacatgatctcatatcagggacttgttcgcaccttccTTCGCAGAATAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGAAGcc                                                                                                                                                         <  1:26489‑M1/65‑1 (MQ=255)                                                                                                                                               gtaagttgatgactcatgatgaaccctgttctatggctacagatgacaaacatgatctcctctcagggacttgttcgcaccttccTTAGCAGAATAATATACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGAAAGAATCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACg                                                    <  1:200681‑M1/166‑1 (MQ=255)                                                                                                                                                             catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCAGAATAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAcccc                                                                                                                >  1:177171‑M1/72‑177 (MQ=255)                                                                                                                                                                 atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCAGAATAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGAACGGCTGGCTCGTGGtcgcgg                                  <  1:5219‑M1/184‑2 (MQ=255)                                                                                                                                                                                     ccagatgacaaacatgatctcatatcagggactggttcgcaccttccTTAGCAGAATAATCTACCTACGCGAGACCATGATTGTGACACTTCTCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCACCCATTTTCGTCGTCAGAAAACCCCTGCCGTTATCGTGCTGCCCCCCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACGGCTGGCTCGTGGTCGCGTGCTGTTGCTGGCACACGt                >  1:82126‑M1/48‑249 (MQ=255)                                                                                                                                                                                       tgatgaaaaacaagatctcatatcagggacttgttcgcaacttccTTAGCAGAATAATCTACCTCCACGGGCACATGATTTTTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTAATAAAACCCCTGCCGATATCGCACTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACGGCTCGCTCGTGGTCGCGTGCTGGAGCTGGCACACGTTaa             <  1:40296‑M1/205‑1 (MQ=255)                                                                                                                                                                                                                       gttcgcaccttccTTAGCAGACTAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGACGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTCTCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGCTAGCGGAACTGGCACGGCTGGCTCGTGGTCGCGTGCTGGTGCTGGCACCCGTTAAAGAACtggtgg  <  1:102212‑M1/216‑1 (MQ=255)                                                                                                                                                                                                                                 tcnttAGCNGAATNATCTACCTACGCGAGNCCATCACTGTTACACTCCGNNCNTATCANCaaga                                                                                                                                                             <  2:117399/61‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                        ATTACGGACGATTTCGCCATCGACGGTGACACGATTGCCGCGGATTTCACGCCCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCTGAACTGTTGTCTGCCCAGTATAGCGGTCTAATAACATCCCTCAAGGGAAAAAGATCCATGGCATACTATTAGCAGAATAATCTACCTACGCGAGACCATGATTTTTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACGGCTGGCTCGTGGTCGCGTGCTGGTGCTGGCACACGTTAAAGAACTGGTGG  >  NC_000913/2280376‑2280818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.