New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2280603 =	0 (0.000)	12 (1.030)	10/304	0.1	100%	intergenic (‑120/‑29)	rsuA/radD	16S rRNA pseudouridine(516) synthase/putative DNA repair helicase RadD
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

CCACCAGTTCTTTAACGTGTGCCAGCACCAGCACGCGACCACGAGCCAGCCGTGCCAGTTCCGCTATCACCAGGCTTTTACCTGCGCCGGTGGGCAGCACGATAACGGCAGGGGTTTTATGACGACGAAAATGGTTGAGCGTGGCATCCACGGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2280818‑2280603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGA  <  NC_000913/2290113‑2289887                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCACCAGTTCTTTAACGGGTGCCAGCACCAGCACGCGACCACGAGCCAGCCGTGCCAGTTCCGCTAGCACCAGGCTTTTACCTGCGCCGGTGGGCAGCACGAGAACGGCAGGGGTTTTATGACGACGAAAATGGTTGAGCGTGGCATCCACGGCGTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTAGTCTGCTAAGGAAGGTGCGAAC                                                                                                                                                                                                                        <  1:102212/229‑1            TTAACGTGTGCCAGCTCCAGCACGCGACCACGAGCGAGCCGTGCCAGTTCCGCTATCACCAGGCTTTTACCTGCGCCGGTGGGCAGTGCGATATCGGCAGGGGTTTTATTACGACGAAAATGGTTGAGCGTGGCATCCACGGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGTGCCCGTGGAGGTAGATTATTCTGCTAAGGAAGTTGCGAACAAGTCCCTGATATGAGATCTTGTTTTTCATCa                                                                                                                                                                                        <  1:40296/250‑2               ACGTGTGCCAGCAACAGCACGCGACCACGAGCCAGCCGTGCCAGTTCCGCTATCACCAGGCTTTTACCTGCGCCGGGGGGCAGCACGATAACGGCAGGGGTTTTCTGACGACGAAAATGGGTGAGCGTGGCATCCACGGCTTCTTGCTGATATGGGAGAAGTGTCACAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAAGGAAGGTGCGAACCAGTCCCTGATATGAGATCATGTTTGTCATCTGG                                                                                                                                                                                      >  1:82126/1‑249                                 cCGCGACCACGAGCCAGCCGTTCCAGTTCCGCTATCACCAGGCTTTTACCTGCGCCGGTGGGCAGCACGATAACGGCAGGGGTTTTATGACGACGAAAATGGTTGAGCGTGGCATCCACGGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT                                                                                                                                                                  <  1:5219/250‑1                                                   CGTGCCAGTTCCGCTATCACCAGGCTTTTACCTGCGCCGGTGGGCAGCACGATAACGGCAGGGGTTTTATGACGACGAAAATGGTTGAGCGTGGCATCCACGGATTCTTTCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTATATTATTCTGCTAAGGAAGGTGCGAACAAGTCCCTGAGAGGAGATCATGTTTGTCATCTGTAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTAC                                                                                                                                                <  1:200681/251‑1                                                                                                               GGGGTTTTATGACGACGAAAATGGTTGAGCGTGGCATCCACGGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG                                                                                                                                                              >  1:177171/1‑177                                                                                                                                      GTTGAGCGTGGCATCCACGGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCAT                                                             >  1:9964/1‑251                                                                                                                                                GCATCCACGGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTCGGTAGCTTATTCTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACAT                                                   >  1:142697/1‑251                                                                                                                                                        GGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCGAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCGGGAGCCATAGAACAGGGTGCATCATGAGTCATCAACTTACCTTCGCCAACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCn                                                                                        <  1:26489/206‑2                                                                                                                                                                  TGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAAGGCAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAAAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGTCAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGG                                              >  1:273903/1‑238                                                                                                                                                                                 GTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGG                                                                            >  1:11264/1‑193                                                                                                                                                                                                 CGCGTAGGTAGATTATTCTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGA  <  1:112900/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCACCAGTTCTTTAACGTGTGCCAGCACCAGCACGCGACCACGAGCCAGCCGTGCCAGTTCCGCTATCACCAGGCTTTTACCTGCGCCGGTGGGCAGCACGATAACGGCAGGGGTTTTATGACGACGAAAATGGTTGAGCGTGGCATCCACGGCTTCTTGCTGATATGGGCGAAGTGTAAAAATCATGGTCTCGCGTAGGTAGATTATTCTGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2280818‑2280603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGA  <  NC_000913/2290113‑2289887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.