| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,290,881 | IS1 (+) +9 bp | coding (640‑648/1014 nt) | rssB → | regulator of RpoS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 15 (1.290) | 12/304 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1290881 = | 0 (0.000) | coding (640/1014 nt) | rssB | regulator of RpoS | |||||
| * | ? | NC_000913 | = 1290889 | 0 (0.000) | 16 (1.370) | 10/304 | 0.1 | 100% | coding (648/1014 nt) | rssB | regulator of RpoS |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
GGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATG > NC_000913/1290669‑1291133 | gggATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCGTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgt > 1:212400‑M1/1‑221 (MQ=255)gggATGCAATGGATGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgt > 1:212407‑M1/1‑221 (MQ=255) gtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAAc < 1:84271‑M2/33‑1 (MQ=255) ncctGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACCAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtg > 1:32403‑M1/2‑202 (MQ=255) aCAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc > 1:136153‑M1/1‑178 (MQ=255) aaaacaaaaaccgccggtTCAGCAGGTGATTTCCCATTGCCGGGTTAATTAGCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagn < 1:52001‑M1/243‑77 (MQ=255) gcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagttattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTg < 1:85131‑M2/84‑1 (MQ=255) gcagcacctggcgcggctgggacggaagtcgctgtcgttctcaaaatctgtggagctacatgacaaagtcatctggcattatctgagcataaaacactatcaataagttggagtcattaccCTTTCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCt < 1:153363‑M2/53‑1 (MQ=255) cacggctgggacggacgtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGa > 1:227193‑M2/111‑207 (MQ=255) ggggcggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactctcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGTGGCAGTTtcn < 1:71689‑M2/146‑2 (MQ=255) gacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagccatcgggccttatctgcacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAAc > 1:262146‑M2/102‑209 (MQ=255) ncggACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagct > 1:71700‑M1/2‑108 (MQ=255) cggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTAtt < 1:134040‑M2/152‑1 (MQ=255) aCAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatct > 1:94838‑M1/1‑104 (MQ=255) ntcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGc > 1:171948‑M2/95‑242 (MQ=255) gtcgctgtcgttctcaaaatcggtggagcggcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTGGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTGGCCAGAGTTGGGCGCGGTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTg < 1:241806‑M2/157‑1 (MQ=255) aaCCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc < 1:6684‑M1/183‑83 (MQ=255) ccGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTGGATGGCCTTGAGGGCACCCGAGCTGGACAGAATGGCGTACGTGCTGCCggtgatgcgtccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg < 1:133658‑M1/156‑59 (MQ=255) ttctcaaaatcggtggagctgcatgacaaagtcagcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACATCTGGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCAttt < 1:239308‑M2/113‑1 (MQ=255) ntgGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcac > 1:31207‑M1/2‑93 (MQ=255) ggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTg > 1:211199‑M2/74‑128 (MQ=255) ncgCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaac > 1:55037‑M1/2‑77 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCATTGTTATTACGCGCATTGNNTAACGGnnt > 2:21958‑M2/62‑99 (MQ=255) gAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgagttagtttatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgtcggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatcccggctctcactgccgtaagacatggc < 1:98409‑M1/239‑174 (MQ=255) caatcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTAGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGtt > 1:230966‑M2/57‑251 (MQ=255) tgaacataaaacactatcaataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTAACTTCGTCAGGCCAAGCTGCCGGGGCATTTTCCGCTATTAGTTGGCTATTatc < 1:116607‑M2/166‑1 (MQ=255) ccTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc < 1:40348‑M1/128‑86 (MQ=255) tGTCACCCGAGCTGGACATAATGGCGTACTTTCTGCCggtgatgctgccaacttactgatttagtgtatgatggtttttgggaggtgctccagtggcttctgtttctatcagctttcccgcctgttcagctacttacgggttggtgcgtaacgggaaaggccccgccggacatcagcgctatctctgctctcactgccgtaaaacatgg < 1:127748‑M1/209‑173 (MQ=255) ataagttggagtcattaccCTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCTTTATGGAAGCAGGTAAACCATTTTCGTCGTCAGGc < 1:218773‑M2/125‑1 (MQ=255) tACTTGCTGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttt > 1:241106‑M1/1‑11 (MQ=255) gctgcCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatgaatggc < 1:9112‑M1/250‑245 (MQ=255) ctnnNNNGTTNTTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGc < 2:171948/144‑1 (MQ=255) | GGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCTTGTTATTACGCGCATTGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATG > NC_000913/1290669‑1291133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |