| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,349,206 | Δ16,350 bp | IS5‑mediated | [mtgA]–[yhcE] | [mtgA], elbB, arcZ, arcB, yhcC, gltB, gltD, gltF, yhcA, yhcD, [yhcE] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3349206 | 3366543–3365554 | 16349–17338 | 25 [0] | [2] 3 | [mtgA]–[insH10] | [mtgA],elbB,arcZ,arcB,yhcC,gltB,gltD,gltF,yhcA,yhcD,yhcE,[insH10] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 25 (1.430) | 18/290 | 0.0 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3349205 | 0 (0.000) | coding (605/729 nt) | mtgA | peptidoglycan glycosyltransferase MtgA | |||||
GCAAGAGCGGTTATGGAAACGATTTATCGCCCAACCGGCGCTGGCTATTGCCCTGCAGAAAGATCTGCAACCTCGTGAGAGCAAAACGCTGGCCCTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCGGGTTTGTGGAAATAACGTTGTGCCGCAGCTTCGACGCCAAACACACCGTCGCCAAATTCGGCGATATTCAGGTAAACCGTCAGGATACGCTTTTTGCTCCAGACCGTTTCTATCCCCAGCGTTAATCCGGCTTCCAGCCCTTTTCGAACCCAGCTACGCCCATCCCATAAAAAGAGATTTTT > NC_000913/3348970‑3349437 | gCAAGAGCGGTTATGGAAACGATTTATCGCCCAACCGGAGCTGGCTATTGCCCTGCAGAAAGATCTGCAACCTGGGGAGAGCAAAACGATGGCCCTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGTCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGAAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggggcgaata < 1:421393‑M2/250‑15 (MQ=255) ncctGCAGAAAGATCTGCAACCTCGTGAGAGCAAAACGCTGGCCCTCACTTCGCGCGCAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg < 1:48484‑M2/250‑66 (MQ=255) cccTGNNGANNNATNNGCAACCTCGTGAGAGCAAAACGCNGGCCCTCACTTCGCGCGAAGCTTAATCCANCNGNTGTTNNTGCNTAAACGGCTCNCCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCNCNTAGCCCGATGGCGAGGAGACTTTGAAACGAANTGGATTAGggaaggtgcgaataagnggggnnatncnnnnnnn < 2:335318‑M2/220‑35 (MQ=255) cccTGCAGAAAGATCTGCAACCTCGTGAGAGCAAAACGCTGGCCCTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttc > 1:335318‑M2/1‑186 (MQ=255) cggcaGAAAGATCTGCAACCTCGTGAGAGCAAAACGCTGGCCCTCACGTCGCGCGAAGCTTAATCCATCTTGGGTTTTTGCATAAACGGCTCACCGCCTAACTGATGCAGCTGCCGTAAAATCCACGCGTGACGTCGACGCACGTAGCCCGATGGCGAGGAGACCTTGAAACGAATTGGATTAGggaaggtgcgaataagcggggaaattcttc > 1:331246‑M2/3‑184 (MQ=255) cTGCANNAANNNCTNNAACCTCGTGAGAGCAAAACGCTGNCCCTCACTTCGCGCGAAGCTTACTACAGCNGNTNTTGTNNCATNAACGGCTCACNGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTCCGCACNTNGCCCGATGGCGAGGCGCCTTTGACACGACGTNGATTAGtgaaggcgcgaataagcgnggaanntcntn < 2:331246‑M2/214‑31 (MQ=255) gCAGAAAGATCTGCAACCTCGTGAGAGCAAAACGCTGGCCCTCACGTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCTCCTAACTAATACATCTGCCGTAAAATCCACGACGGACGGCTACGTACGTAGCACGATGGCGAGGAGTCTTTGAAACGAAGTGTATTAGggaaggtacgaacaagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc > 1:444707‑M2/1‑182 (MQ=255) ntcGTGAGAGCAAAACGCTGGCCCTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCCCGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc < 1:89147‑M2/244‑81 (MQ=255) gagaGCAAAACGCTGGCCCTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgacacagtcatttcatttcttcttgtttgacccttttttttctcccttaaatgcn > 1:110809‑M2/1‑160 (MQ=255) gagCAAAACGCTGGCCCTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTACCTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAATGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt < 1:207560‑M2/251‑94 (MQ=255) ccTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATATGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGCTGGCGAGGAGACTTTGAAACGACGTGGATTAGggaaggtgcg < 1:400495‑M2/153‑11 (MQ=255) cgcgAAGCTTAATCCAGCTGGTGTTGNTGCATANNCGNCTCACCGCCTAACTGATACNTCNNNCNNNANCTCCANGANNGACGGATACNCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcnaataagcggnnaaattcttctcggctgactcantcanntnntnactngan < 2:105294‑M2/193‑61 (MQ=255) gCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcc < 1:169648‑M2/250‑124 (MQ=255) nnnnnnnnnncannnnnggcnCACCGCCTAAGTGATACATCTGCCGTAAAATCCACGCCTGACGGCTCCGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgact > 2:269955‑M2/11‑114 (MQ=255) tCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatcn > 1:47555‑M2/1‑75 (MQ=255) aaaaTCCANGNNNGNNGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTNGATTAGggaaggtgcnaanaagcngggnaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttnagg < 2:317203‑M2/198‑132 (MQ=255) aaaaTCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtcn > 1:111744‑M2/1‑67 (MQ=255) aaaaTCCACGCCTGACGGCGACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgacgcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaagg > 1:317203‑M2/1‑67 (MQ=255) ccACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggccaacctgt < 1:335973‑M2/251‑190 (MQ=255) aacGGCTTCGCACGTAGCCCGATGGCGATGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaagaagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcgtcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacagg > 1:322184‑M2/2‑54 (MQ=255) gCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgtaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtga > 1:238515‑M2/1‑50 (MQ=255) cACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgagtttttctcccgtaaatgccttgaatcagcctatatagaccgtttcttcgccatttaaggcgttatccccagtttttagtgatatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtn > 1:90551‑M2/1‑44 (MQ=255) gCCCGAGGGCGAGGAGACTTTGAAACGAAGTGGATTAGggaaggtgcgaataagcg > 1:434910‑M2/1‑38 (MQ=255) tGAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcattttgtccgcccgaaacaggttggccagcgtgaataacatcgccagtttgttatcgt > 1:105294‑M2/1‑18 (MQ=255) gAAACGAAGTGGATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatc < 1:206185‑M2/155‑139 (MQ=255) | GCAAGAGCGGTTATGGAAACGATTTATCGCCCAACCGGCGCTGGCTATTGCCCTGCAGAAAGATCTGCAACCTCGTGAGAGCAAAACGCTGGCCCTCACTTCGCGCGAAGCTTAATCCAGCTGGTGTTGTTGCATAAACGGCTCACCGCCTAACTGATACATCTGCCGTAAAATCCACGCCTGACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCGGGTTTGTGGAAATAACGTTGTGCCGCAGCTTCGACGCCAAACACACCGTCGCCAAATTCGGCGATATTCAGGTAAACCGTCAGGATACGCTTTTTGCTCCAGACCGTTTCTATCCCCAGCGTTAATCCGGCTTCCAGCCCTTTTCGAACCCAGCTACGCCCATCCCATAAAAAGAGATTTTT > NC_000913/3348970‑3349437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |