| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,349,206 | Δ16,350 bp | IS5‑mediated | [mtgA]–[yhcE] | [mtgA], elbB, arcZ, arcB, yhcC, gltB, gltD, gltF, yhcA, yhcD, [yhcE] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3349206 | 3366543–3365554 | 16349–17338 | 25 [0] | [2] 3 | [mtgA]–[insH10] | [mtgA],elbB,arcZ,arcB,yhcC,gltB,gltD,gltF,yhcA,yhcD,yhcE,[insH10] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 25 (1.430) | 18/290 | 0.0 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3349205 | 0 (0.000) | coding (605/729 nt) | mtgA | peptidoglycan glycosyltransferase MtgA | |||||
ACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2289150‑2288919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGGGCCAGCGTTTTGCTCTCACGAGGTTGCAGATCTTTCTGCAGGGCAATAGCCAGCGCCGGTTGGGCGATAAATCGTTTCCATAACCGCTCTTGC < NC_000913/3349205‑3348970 ACGATAACAAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACAAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCA > 1:105294/1‑250 nACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATATCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTATATAGGCTGATTCAAGGCATTTACGGGAGAAAAACTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTG > 1:90551/2‑251 CCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGACGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTCTTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCATCGCCATCGGGCTACGTGCGAAGCCGTt > 1:322184/1‑248 acaggttggCCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGG < 1:335973/242‑1 nGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTT > 1:111744/2‑250 TCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATT‑ACACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGC > 1:238515/1‑202 nGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGA > 1:47555/2‑214 GATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTC < 1:206185/155‑1 CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGCGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTCGCCGTCAGGCGTGGATTTT > 1:317203/1‑198 CCTNAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTNCCCNGCTTNTTNGCACCTTCCCTAATCNACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCNNCNNNCNTGGATTTT < 2:317203/198‑1 GGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGC < 1:169648/250‑1 AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCATTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGGTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGGGCCAGCGTTTTGCTC < 1:207560/251‑1 nGCATTTAAGGGAGAAAAAAAAGGGTCAAACAAGAAGAAATGAAATGACTGTGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGGGCCAGCGTTTTGCTCTC > 1:110809/2‑251 GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGGGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGGGCCAGCGTTTTGCTCTCACGAn < 1:89147/245‑2 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTGTTCGTACCTTCCCTAATACACTTCGTTTCAAAGACTCCTCGCCATCGTGCTACGTACGTAGCCGTCCGTCGTGGATTTTACGGCAGATGTATTAGTTAGGAGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGACGTGAGGGCCAGCGTTTTGCTCTCACGAGGTTGCAGATCTTTCTGC > 1:444707/1‑250 CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTGCGCGCGAAGTGAGGGCCAGCGTTTTGCTCTCACGAGGTTGCAGATCTTTCTGCAGGn < 1:48484/251‑2 ntcnagtnANNANNTGANTGAGTCAGCCGAGAAGAATTTNNCCGCTTATTNGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGNGTATCCGTCNNTCNTGGAGNTNNNGNNNGANGTATCAGTTAGGCGGTGAGNCGNNTATGCANCAACACCAGCTGGATTAAGCTTCGCG < 2:105294/185‑1 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGGAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCACTTAGGCGGTGNGCCNNNNNTGnnnnnnnnnn > 2:269955/1‑144 nnnnnnnGNATNNCCCCNCTTATTCGCACCTTCCCTAATCCANTTCGTTTCAAAGTCTCCTCGCCATCGGGCTANGNGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGNGAGCCGTTTANGCANNAACANCNGNTGGATTAAGCTTCGCGCGAAGTGAGGGCCNGCGTTTTGCTCTCACGAGGTTGCNNATNNNTCNNCAGGG < 2:335318/213‑1 nANGANNTTCCNCGCTTATTCGCGCCTTCACTAATCNACGTCGTGTCAAAGGCGCCTCGCCATCGGGCNANGTGCGGAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCNGTGAGCCGTTNATGNNACAANANCNGCTGTAGTAAGCTTCGCGCGAAGTGAGGGNCAGCGTTTTGCTCTCACGAGGTTNNAGNNNTTNNTGCAG < 2:331246/213‑1 GAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGGGCCAGCGTTTTGCTCTCACGAGGTTGCAGATCTTTCTGCAGGG > 1:335318/1‑216 GAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATCCAATTCGTTTCAAGGTCTCCTCGCCATCGGGCTACGTGCGTCGACGTCACGCGTGGATTTTACGGCAGCTGCATCAGTTAGGCGGTGAGCCGTTTATGCAAAAACCCAAGATGGATTAAGCTTCGCGCGACGTGAGGGCCAGCGTTTTGCTCTCACGAGGTTGCAGATCTTTCTGCcg > 1:331246/1‑212 CGCTTATTCGCACCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCCTCGGGC > 1:434910/1‑56 TATTCGCCCCTTCCCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTTCGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGACGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGGGCCATCGTTTTGCTCTCCCCAGGTTGCAGATCTTTCTGCAGGGCAATAGCCAGCTCCGGTTGGGCGATAAATCGTTTCCATAACCGCTCTTGC < 1:421393/250‑1 CGCACCTTCCCTAATCCACGTCGTTTCAAAGTCTCCTCGCCAGCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCATATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGG < 1:400495/153‑1 ACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2289150‑2288919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTAATCCACTTCGTTTCAAAGTCTCCTCGCCATCGGGCTACGTGCGTAGCCGTCAGGCGTGGATTTTACGGCAGATGTATCAGTTAGGCGGTGAGCCGTTTATGCAACAACACCAGCTGGATTAAGCTTCGCGCGAAGTGAGGGCCAGCGTTTTGCTCTCACGAGGTTGCAGATCTTTCTGCAGGGCAATAGCCAGCGCCGGTTGGGCGATAAATCGTTTCCATAACCGCTCTTGC < NC_000913/3349205‑3348970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |