| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,757,529 | Δ63 bp | coding (109‑171/237 nt) | lpp → | murein lipoprotein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1757529 | 1757591 | 63 | 16 [0] | [0] 15 | lpp | murein lipoprotein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1757528 | 0 (0.000) | 15 (0.870) | 12/288 | 0.2 | 100% | coding (108/237 nt) | lpp | murein lipoprotein |
| ? | NC_000913 | 1757592 = | 0 (0.000) | coding (172/237 nt) | lpp | murein lipoprotein | |||||
ACCCAGCGTTCGATGCTTCTTTGAGCGAACGATCAAAAATAAGTGCCTTCCCATCAAAAAAATATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGC > NC_000913/1757283‑1757734 | aCCCAGCGTTCGATGCTTCTTTGAGCGAACGAACAAAAATAAGTGCCTTACCACCAAAAAAATCTTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACCTGGAGATTAACTCACTCTAGAGGGGATTACTTATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgcta > 1:234036‑M1/1‑246 (MQ=255) cttTGAGCGAACGATCAAAAATAAGTGCCTTCCCATCAACAAAATATTCTCAACATAAACAACTTTGTGTAATACTTGTCACGCTACATGGAGCTTCCCTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGCACTGGGCGTGGTAATCCTGGGCTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgc > 1:442629‑M1/1‑228 (MQ=255) aTCAAAAATAAGTGCCTTCCCATCAAAAAAATATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaaaatgacgcagctcgtgctaaccagcgtctg < 1:343222‑M1/251‑37 (MQ=255) aTCAAAAAAATATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTCCATTGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTTACGTTCAGACTgctaaagattacgcagctcgtgttagccatcgtctggacaacattgctagtaaatac < 1:164273‑M1/251‑58 (MQ=255) cTTGTAACGCTACATGGAGATTACCTCACTCTAGAGGGAATTAATAATGAAAGCTCCTAAACTGGTACTGGGCGCGGTAATCATGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGAct > 1:162220/1‑154 (MQ=255) gagaTTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCACGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGATCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttt > 1:235294‑M1/1‑138 (MQ=255) aaTCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatg < 1:377838‑M1/172‑46 (MQ=255) actaAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTTTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGATGTCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatggctactaaataccgcaagtaatagtacctgtgacgtgaaaaatggcg > 1:334635‑M1/1‑99 (MQ=255) actaAACTGGGACNGGGCGCGGTAATCCTGGGTTCTACTCTGCTGNCNGGGTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGNCTgctaaagangacnnagctngngntaaccagcgtctggacaacatggctactanataccgcaagtaatagtacctgtnnagnnnaanntggcg < 2:334635‑M1/191‑93 (MQ=255) cgGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTACAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtc > 1:230840‑M1/1‑80 (MQ=255) aaTCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatggctactaaagaccgcaagtaatagtacctgtgaagtgaaaaatggcgctcattgtgcgccattttttttgtctgccgtttaccgctacttcgtcacgcgtaacatattcccttgctctggttcaccattc < 1:256923‑M1/251‑176 (MQ=255) tGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGGCTTCGGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatggctactaaatac < 1:223606‑M1/128‑58 (MQ=255) gCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaagatgacgtagctcgtgctaaccagcgtctggacaacatggctactaaatgccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgctactgcgtcacgcgtaacatattcccttgctctggttcaccattctgcgctgactctactgaaggcgcattgcn < 1:85681‑M1/251‑205 (MQ=255) gCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttgtttgtctgccgtttaccgctactgcgtcacgcgtaacatattcccttgctctggttcaccattctgcgctgactctacttaaggcgcattgcc < 1:366769‑M1/251‑205 (MQ=255) cTCCAGCAACGCTAAAATCGATCAGCTGGCTTCTGACGTTCAGACTgctaaagatgacgcagctcgtgctaaccagcgtctggacaacatggcaactcaatacagcaagtaatagtacatgcgcagtgaaaaatggcgcacattgagcgacattttttttgtctgccgtttaccgctacagcgtcacgcgtaacatattaccatgctctggctcaccattctgcgctgactctactgaaggcgcattgctg > 1:334524‑M1/1‑46 (MQ=255) tCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTgctacagatgacgcagctcgtgataacccgcgtctggacaacatggctcctaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgctactgcgtcacgcgaaacatattcccttgctctggttcaccattctgcgctgactctactgaaggcgcattgctgg > 1:167578‑M1/1‑45 (MQ=255) | ACCCAGCGTTCGATGCTTCTTTGAGCGAACGATCAAAAATAAGTGCCTTCCCATCAAAAAAATATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGC > NC_000913/1757283‑1757734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |