| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,757,529 | Δ63 bp | coding (109‑171/237 nt) | lpp → | murein lipoprotein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1757529 | 1757591 | 63 | 16 [0] | [0] 15 | lpp | murein lipoprotein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1757528 | 0 (0.000) | 15 (0.870) | 12/288 | 0.2 | 100% | coding (108/237 nt) | lpp | murein lipoprotein |
| ? | NC_000913 | 1757592 = | 0 (0.000) | coding (172/237 nt) | lpp | murein lipoprotein | |||||
ATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGG > NC_000913/1757346‑1757797 | acccagcgttcgatgcttctttgagcgaacgaacaaaaataagtgccttaccaccaaaaaaatcttctcaacataaaaaactttgtgtaatacttgtaacgctacctggagattaactcactctagaggggattacttatgaaagctactaaactggtactgggcgcggtaatcctgggttctactctgctggcaggttgctccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTa > 1:234036‑M2/247‑250 (MQ=255) ctttgagcgaacgatcaaaaataagtgccttcccatcaacaaaatattctcaacataaacaactttgtgtaatacttgtcacgctacatggagcttccctcaatctagagggtattaataatgaaagctactaaactggcactgggcgtggtaatcctgggctctactctgctggcaggttgctccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGc > 1:442629‑M2/229‑251 (MQ=255) atcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgtaacgctacatggagattaactcaatctagagggtattaataatgaaagctactaaactggtactgggcgcggtaatcctgggttctactctgctggcaggttgctccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTAAAAATGACGCAGCTCGTGCTAACCAGCGTCTg < 1:343222‑M2/36‑1 (MQ=255) atcaaaaaaatattctcaacataaaaaactttgtgtaatacttgtaacgctccattgagattaactcaatctagagggtattaataatgaaagctactaaactggtactgggcgcggtaatcctgggttctactctgctggcaggttgctccagcaacgctaaaatcgatcagctgtcttcttacgttcagactGCTAAAGATTACGCAGCTCGTGTTAGCCATCGTCTGGACAACATTGCTAGTAAATAc < 1:164273‑M2/57‑1 (MQ=255) gagattaactcaatctagagggtattaataatgaaagctactaaactggtactgggcacggtaatcctgggttctactctgctggcaggttgatccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCAttttttt > 1:235294‑M2/139‑251 (MQ=255) aatctagagggtattaataatgaaagctactaaactggtactgggcgcggtaatcctgggttctactctgctggcaggttgctccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATg < 1:377838‑M2/45‑1 (MQ=255) actaaactggtactgggcgcggtaatcctgggttctactttgctggcaggttgctccagcaacgctaaaatcgatcagatgtcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGACGTGAAAAATGgcg > 1:334635‑M2/100‑191 (MQ=255) actaaactgggacngggcgcggtaatcctgggttctactctgctgncngggtgctccagcaacgctaaaatcgatcagctgtcttctgacgttcagnctGCTAAAGANGACNNAGCTNGNGNTAACCAGCGTCTGGACAACATGGCTACTANATACCGCAAGTAATAGTACCTGTNNAGNNNAANNTGgcg < 2:334635‑M2/92‑1 (MQ=255) cggtaatcctgggttctactctgctggcaggttgctccagcaacgctacaatcgatcagctgtcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTc > 1:230840‑M2/81‑197 (MQ=255) aatcctgggttctactctgctggcaggttgctccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAAGACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCTCATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTTCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTc < 1:256923‑M2/175‑1 (MQ=255) tgggttctactctgctggcaggttgctccagcaacgctaaaatcgatcagctggcttcggacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATAc < 1:223606‑M2/57‑1 (MQ=255) gctccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTAAAGATGACGTAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATGCCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATtgcn < 1:85681‑M2/204‑2 (MQ=255) gctccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTGTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTTAAGGCGCATtgcc < 1:366769‑M2/204‑2 (MQ=255) ctccagcaacgctaaaatcgatcagctggcttctgacgttcagactGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCAACTCAATACAGCAAGTAATAGTACATGCGCAGTGAAAAATGGCGCACATTGAGCGACATTTTTTTTGTCTGCCGTTTACCGCTACAGCGTCACGCGTAACATATTACCATGCTCTGGCTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgctg > 1:334524‑M2/47‑251 (MQ=255) tccagcaacgctaaaatcgatcagctgtcttctgacgttcagactGCTACAGATGACGCAGCTCGTGATAACCCGCGTCTGGACAACATGGCTCCTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGAAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgctgg > 1:167578‑M2/46‑251 (MQ=255) | ATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGG > NC_000913/1757346‑1757797 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |