| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 402,391 | Δ723 bp | coding (645‑1367/1416 nt) | phoA → | alkaline phosphatase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 402391 | 403113 | 723 | 24 [1] | [0] 24 | phoA | alkaline phosphatase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 402390 | 1 (0.060) | 24 (1.410) | 21/282 | 0.0 | 98.0% | coding (644/1416 nt) | phoA | alkaline phosphatase |
| ? | NC_000913 | 403114 = | 0 (0.000) | coding (1368/1416 nt) | phoA | alkaline phosphatase | |||||
TTCGCTAAAAAGGAGGGTAACACGCTGGTCATAGTCACCGCTGATCACGCCCACGCCAGCCAGATTGTTGCGCCGGATACCAAAGCTCCGGGCCTCACCCAGGCGCTAAATACCAAAGATGGCGCAGTGATGGTGATGAGTTACGGGAACTCCGAAGAGGATTCACAAGAACATACCGGCAGTCAGTTGCGTATTGCGGCGTATGGCCCGCATGCCGCCAATGTTGTTGGACTGACCGACCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTTAAC > NC_000913/402875‑403330 | aaaacctataacggcgcgctgggcgtcgatattcacgaaaacgatcaccccacgattctggaaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGAtct > 1:177318‑M2/240‑251 (MQ=255) aagatcacccaactattctggaaagggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggttgcacatgggacctcgcgcaaatgcgtcggtccgagcgcgaccagtgaaaaatgtcctggtatctctctgtataaaggcggaaaaggatcgatcaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAAc < 1:423153‑M2/52‑1 (MQ=255) naaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgcagcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAAtttt > 1:281328‑M2/180‑251 (MQ=255) aaatggcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTc < 1:106852‑M2/73‑1 (MQ=255) gcaaaagccgcaggtctggcgaccggtaacgtttctaccgcagagttgcaggatgccaagcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGc > 1:304672‑M2/174‑251 (MQ=255) agccgcaggtctggcgaccggtaacgtttataccgccgagttgcaggatgccacgcacgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacactctggaaaacggcggaaaaggatcgattaccgcCCAGACCGATCTCTTCTACACAATGAAAGCCGCTCTGGGGCTGAAATAAAACAGCGCCCGGCAGTGAATTTTCGCTGCCGggt > 1:408869‑M2/169‑251 (MQ=255) gaccggtaacgtttctaccgcagagttgcaggatgccacgcccgctgcgctggtggaacatgtgacctcgcgcaaatgctccggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAACACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGtt > 1:77110‑M2/154‑251 (MQ=255) ctaccgcagagttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtacgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACtt > 1:234782‑M2/140‑250 (MQ=255) gttgcaggatgccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATg < 1:285946‑M2/25‑1 (MQ=255) nnnnnnncncanncccgnggcgctggtggcacatgtgacctcncgcaaatgctacggtccgagcgcgaccagtgnanaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgnCCAGACCGATNTCTNNTACANCNTNAAAGCCGCTCTGGGGCTGAAATAAAACCGNGCCCGGCAGTGAATTTTCGCTGCNNGGNNNTTNNTTTGc < 2:326822‑M2/94‑1 (MQ=255) gatgccacgcccactgcgctggtggcacatgggacctcgcgcaaatgctacggtccgagcgcgacccgtgcaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACcgcg > 1:195072‑M2/123‑178 (MQ=255) ccacgcccgctgcgctggtggcacatgtgacctcgcgcacatgctacggtccgagcgcgaccagtgaacaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTaca > 1:238682‑M2/119‑138 (MQ=255) ccacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCAt > 1:120515‑M2/119‑250 (MQ=255) cacgcccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGc > 1:326822‑M2/118‑211 (MQ=255) ncccgctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattacagaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCt > 1:49747‑M2/115‑251 (MQ=255) cngctgcgctggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAAc > 1:349306‑M2/113‑164 (MQ=255) ggtggcacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtacgggtaacgctcgggaaaaaggcggaaaaggatcgattaccgaCCAGACCGAGCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGGGAATTTTCGCTTCCGGGTGGGTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAAc < 1:234166‑M2/149‑1 (MQ=255) cacatgtgacctcgcgcaaatgctacggtccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTac > 1:313937‑M2/98‑116 (MQ=255) gacctcgcgaaaatgctacggtccgancgcgacnngtnaaaaatgtccgggtaacgcnctnnnannngncggaanagnntcgctcaccnaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGACATAAACCNGCGACCGGCNNTGAATTTTCGCTGCCGGGTGGNTTTNNtnntntttntan > 2:103909‑M2/91‑188 (MQ=255) ccgatcgcgaccagtgaaaaatgtccgtgtaacgctcttgaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTCCACCATGAAAGc < 1:321937‑M2/30‑1 (MQ=255) ccgagcgcgaccagtgaaaaatgtccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTc > 1:307195‑M2/69‑206 (MQ=255) ccgggtaacgctctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGATGCTATGAAAATAACATTACTGGTTGCCTTGCTTTTCGGTCTgg < 1:356215‑M2/207‑1 (MQ=255) gggtaacgctcgggaaaaaggcggaaaatgatcgatgaccgaCCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAg < 1:188694‑M2/100‑1 (MQ=255) ctggaaaaaggcggaaaaggatcgattaccgaCCAGACCGATCTCTTCTACACCAGGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCGGGCTTTTCGGTCTGGTGTTTTTAac < 1:103909‑M2/217‑1 (MQ=255) | TTCGCTAAAAAGGAGGGTAACACGCTGGTCATAGTCACCGCTGATCACGCCCACGCCAGCCAGATTGTTGCGCCGGATACCAAAGCTCCGGGCCTCACCCAGGCGCTAAATACCAAAGATGGCGCAGTGATGGTGATGAGTTACGGGAACTCCGAAGAGGATTCACAAGAACATACCGGCAGTCAGTTGCGTATTGCGGCGTATGGCCCGCATGCCGCCAATGTTGTTGGACTGACCGACCAGACCGATCTCTTCTACACCATGAAAGCCGCTCTGGGGCTGAAATAAAACCGCGCCCGGCAGTGAATTTTCGCTGCCGGGTGGTTTTTTTGCTGTTAGCAACCAGACTTAATGGCAGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTATGAAAATAACATTACTGGTTACCTTGCTTTTCGGTCTGGTTTTTTTAAC > NC_000913/402875‑403330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |