| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 402,391 | Δ723 bp | coding (645‑1367/1416 nt) | phoA → | alkaline phosphatase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 402391 | 403113 | 723 | 24 [1] | [0] 24 | phoA | alkaline phosphatase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 402390 | 1 (0.060) | 24 (1.410) | 21/282 | 0.0 | 98.0% | coding (644/1416 nt) | phoA | alkaline phosphatase |
| ? | NC_000913 | 403114 = | 0 (0.000) | coding (1368/1416 nt) | phoA | alkaline phosphatase | |||||
AAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCCGACGTTACGCTTGGCGGCGGCGCAAAAACCTTTGCTGAAACGGCAACCGCTGGTGAATGGCAGGGAAAAACGCTGCGTGAACAGGCACAGGCGCGTGGTTATCAGTTGGTGAGCGATGCTGCCTCACTGAATTCGGTGACGGAAGCGAATCAGCAAAAACCCCTGCTTGGCCTGTTTGCTGACGGCAATATGCCA > NC_000913/402152‑402607 | aaaaCCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAACGATCACCCCACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatct > 1:177318‑M1/1‑239 (MQ=255) aaGATCACCCAACTATTCTGGAAAGGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTTGCACATGGGACCTCGCGCAAATGCGTCGGTCCGAGCGCGACCAGTGAAAAATGTCCTGGTATCTCTCTGTATAAAGGCGGAAAAGGATCGATCACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaac < 1:423153‑M1/251‑53 (MQ=255) naaatGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCAGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaatttt > 1:281328‑M1/2‑179 (MQ=255) aaaTGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttc < 1:106852‑M1/251‑74 (MQ=255) gCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCAAGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgc > 1:304672‑M1/1‑173 (MQ=255) aGCCGCAGGTCTGGCGACCGGTAACGTTTATACCGCCGAGTTGCAGGATGCCACGCACGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACACTCTGGAAAACGGCGGAAAAGGATCGATTACCGCccagaccgatctcttctacacaatgaaagccgctctggggctgaaataaaacagcgcccggcagtgaattttcgctgccgggt > 1:408869‑M1/1‑168 (MQ=255) gACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGAACATGTGACCTCGCGCAAATGCTCCGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataacaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgtt > 1:77110‑M1/1‑153 (MQ=255) cTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTACGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagactt > 1:234782‑M1/1‑139 (MQ=255) gTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatg < 1:285946‑M1/154‑26 (MQ=255) nnnnnnncncanncccgngGCGCTGGTGGCACATGTGACCTCNCGCAAATGCTACGGTCCGAGCGCGACCAGTGNANAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGNccagaccgatntctnntacancntnaaagccgctctggggctgaaataaaaccgngcccggcagtgaattttcgctgcnnggnnnttnntttgc < 2:326822‑M1/211‑95 (MQ=255) gATGCCACGCCCACTGCGCTGGTGGCACATGGGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCCGTGCAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcg > 1:195072‑M1/1‑122 (MQ=255) ccACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCACATGCTACGGTCCGAGCGCGACCAGTGAACAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctaca > 1:238682‑M1/1‑118 (MQ=255) ccACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcat > 1:120515‑M1/1‑118 (MQ=255) cACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgc > 1:326822‑M1/1‑117 (MQ=255) ncccgCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACAGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgct > 1:49747‑M1/2‑114 (MQ=255) cnGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaac > 1:349306‑M1/1‑112 (MQ=255) ggtggCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTACGGGTAACGCTCGGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgagctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagggaattttcgcttccgggtgggttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaac < 1:234166‑M1/251‑150 (MQ=255) ggCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGAAACGCTCTGGAACAAGGCGGCAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCCGACGTTACGCTTGGCGGCGGCGCAAAAACCTTTGCTGAAACGGc > 1:214289/1‑165 (MQ=255) cacaTGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctac > 1:313937‑M1/1‑97 (MQ=255) gACCTCGCGAAAATGCTACGGTCCGANCGCGACNNGTNAAAAATGTCCGGGTAACGCNCTNNNANNNGNCGGAANAGNNTCGCTCACCNAccagaccgatctcttctacaccatgaaagccgctctggggctgacataaaccngcgaccggcnntgaattttcgctgccgggtggntttnntnntntttntan > 2:103909‑M1/1‑90 (MQ=255) ccGATCGCGACCAGTGAAAAATGTCCGTGTAACGCTCTTGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctccaccatgaaagc < 1:321937‑M1/98‑31 (MQ=255) ccGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctc > 1:307195‑M1/1‑68 (MQ=255) ccGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatgatgctatgaaaataacattactggttgccttgcttttcggtctgg < 1:356215‑M1/251‑208 (MQ=255) gggTAACGCTCGGGAAAAAGGCGGAAAATGATCGATGACCGAccagaccgatctcttctacaccatgaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttag < 1:188694‑M1/142‑101 (MQ=255) ctGGAAAAAGGCGGAAAAGGATCGATTACCGAccagaccgatctcttctacaccaggaaagccgctctggggctgaaataaaaccgcgcccggcagtgaattttcgctgccgggtggtttttttgctgttagcaaccagacttaatggcagatcacgggcgcatacgctcatggttaaaacatgaagagggatggtgctatgaaaataacattactggttaccgggcttttcggtctggtgtttttaac < 1:103909‑M1/249‑218 (MQ=255) | AAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCCGACGTTACGCTTGGCGGCGGCGCAAAAACCTTTGCTGAAACGGCAACCGCTGGTGAATGGCAGGGAAAAACGCTGCGTGAACAGGCACAGGCGCGTGGTTATCAGTTGGTGAGCGATGCTGCCTCACTGAATTCGGTGACGGAAGCGAATCAGCAAAAACCCCTGCTTGGCCTGTTTGCTGACGGCAATATGCCA > NC_000913/402152‑402607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |