| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,293,268 | IS5 (–) +4 bp | intergenic (‑346/‑256) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1293268 = | 0 (0.000) | 22 (1.260) | 16/290 | 0.1 | 100% | intergenic (‑346/‑259) | hns/tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1293271 | 0 (0.000) | 20 (1.140) | 13/292 | 0.2 | 100% | intergenic (‑349/‑256) | hns/tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
GCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCTTCGTAAGGGAGAACGCATATACCCACTTCTGTGCATACTGTTGAGCTGAAAAACTGACGAATTATGATAAACTCCAGCCAACTTTATTTCATATCAT > NC_000913/1293039‑1293510 | ggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCtgn > 1:118025‑M1/230‑250 (MQ=255) ggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCa < 1:204100‑M1/28‑1 (MQ=255) gccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccctggcagaatctgcgccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttggtgactcatgatgaaccctgttctatggcgccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCctggagatagg < 1:217631‑M1/29‑6 (MQ=255) ncattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAAc < 1:131929‑M1/30‑1 (MQ=255) atCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACTCCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattc < 1:410‑M1/250‑28 (MQ=255) cATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGGCATATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGACTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:322772‑M1/1‑190 (MQ=255) ccTATGTACACCGATGATTTCGCAGCACGTGAGGGTAAAACTGCCTGATTCATGTCACATTGTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATGAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTATggaagttgcgaataagcggagaaattcttctcggctgactcagtcattgcatttctt < 1:255751‑M1/239‑58 (MQ=255) gTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGCGATTATCGTAGGCTGCCGCCCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGAAATACGAGCATGGACTTAGggaaggtgcgaataagcgggg > 1:324122‑M1/1‑154 (MQ=255) ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatcgcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTgcg > 1:194470‑M1/147‑194 (MQ=255) gaaaatctcttgtcttgtctgacgtcgcttactgctgaagtcacggtcggcgaaggtaagttgatgactcatgatgaaccctgttctagggcttcagaggacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTAtct > 1:299943‑M1/141‑157 (MQ=255) ggtctgacggcgcttactgctgaattcactgtcgtcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAg > 1:192348‑M1/126‑249 (MQ=255) gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagctgatgactcatgatgaacactgttctatggctccagatgacaaacctgatctcatatcagggacttcttcgcaccttccttagtacttncccnnnnnat < 2:268289‑M1/20‑15 (MQ=255) cttctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggtcttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGc > 1:33636‑M1/110‑234 (MQ=255) ngcTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:82771‑M1/2‑102 (MQ=255) nctGACGACCTTTCAGTATTATGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttttt > 1:359837‑M1/2‑101 (MQ=255) gTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttag < 1:22949‑M1/195‑110 (MQ=255) tGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt < 1:407934‑M1/144‑65 (MQ=255) atgaaccctgttatatggctccagatgacaaacatgatcacatatcagggacttgttggcaccttccTTAGTATTGCGCTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGAt < 1:24233‑M1/63‑1 (MQ=255) gtTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtc < 1:244235‑M1/250‑183 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCTTCGTAAGGGAGAACGCATATACCCACTTCTGTGCATACTGTTg > 1:126012‑M1/63‑251 (MQ=255) cGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggacattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccc > 1:337393‑M1/1‑63 (MQ=255) cGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgntttnnnnnccnnnnnn > 2:278708‑M1/1‑63 (MQ=255) cGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaagg > 1:390821‑M1/1‑63 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCa < 1:252699‑M1/28‑1 (MQ=255) tCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCCCTAAGAGCATGGCCTTAGggaaggagcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttatctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcattcggtccgcccgaaacagg > 1:182884‑M1/1‑56 (MQ=255) cccTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg < 1:28618‑M1/120‑66 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGTCTATTACTTGCGCAACAGGTGAAAGATTGTGAATAg > 1:162315‑M1/51‑122 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCTGCGTAAGGGAGAACGCATATACCCACTTCTGTTCATACTGTTGAGCTGAAAAACTg > 1:287972‑M1/48‑249 (MQ=255) aTTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttttagcctattttttcgcccgtaaatgccttgaatcagcctatgtagaccgtttcttcgccatttaatgcgttatccccagtttttattgagatctctcccactgacgtatcatttggtccgcccgaaacaggttgg < 1:212083‑M1/250‑200 (MQ=255) aTTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggc < 1:152081‑M1/251‑201 (MQ=255) naaaagTAGAACAGTCGCAATAAGAGCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacg > 1:91080‑M1/2‑37 (MQ=255) tctcatatcagggacttgttcgcaccttccTTAGTATTGCACTa < 2:29648‑M1/14‑1 (MQ=255) ggacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCTTCGTAAGGGAGAACGCa < 1:20304‑M1/163‑1 (MQ=255) nacttgttcgcaccttccTTAGTATTGCACTATCTCCTGGGGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGACGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCTTCGTAAGGGAGAACGAATATACCCACTTCTGTGCATACTGTTGAGCTGAAAAACTGACGAATTATGATAAACTCCAGCCAACTTTAt < 1:56179‑M1/233‑1 (MQ=255) ggcttgttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCTTCGTAAGGGAGAACGCATATACCCACTTCTGTGCATACTGTTGAGCTGAAAAACTGACGAATTATGATAAACTCCAGCCAACTTTAt < 1:406979‑M1/233‑1 (MQ=255) nttcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAg < 1:81546‑M1/61‑1 (MQ=255) tcgcaccttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGACTAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTACGCAAGGCTTCGTAAGGGAGAACGCa < 1:440139‑M1/163‑1 (MQ=255) gCATGGACTTAGggaaggtgcgaataagcggggaaattcttctcggctgacgcagtcatttcatttcttcatgtttgagccgattttgtctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacggatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtttttcan < 1:49413‑M1/251‑240 (MQ=255) tGGACTTAGggaaggtgcgaataagcggggaaattcttctcggn < 1:270888‑M1/44‑36 (MQ=255) tGGACTTAGggaaggtgcgaataagcggggaaattcttctcggc > 2:270888‑M1/1‑9 (MQ=255) cttccTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCATCGTAAggg > 1:356907‑M1/6‑160 (MQ=255) ccTTAGTAGGGCACTAGCTCCTGGAGGGCAACAGAGGGCTAGTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACcag > 1:257579‑M1/3‑81 (MQ=255) | GCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAATAGTTACCAGCAGTCATTTACCCGCTTATAACAAGCGAGGCAGTTGTAATGATAGCTCAGAAGGATTATGCAAGGCTTCGTAAGGGAGAACGCATATACCCACTTCTGTGCATACTGTTGAGCTGAAAAACTGACGAATTATGATAAACTCCAGCCAACTTTATTTCATATCAT > NC_000913/1293039‑1293510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |