| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,431,062 | IS2 (–) +5 bp | coding (2014‑2018/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1431062 = | 0 (0.000) | 22 (1.250) | 20/292 | 0.0 | 100% | coding (2014/3363 nt) | stfR | putative prophage side tail fiber protein StfR |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1431066 | 0 (0.000) | 20 (1.140) | 17/292 | 0.1 | 100% | coding (2018/3363 nt) | stfR | putative prophage side tail fiber protein StfR |
| ? | NC_000913 | = 1651548 | NA (NA) | noncoding (706/706 nt) | IS2 | repeat region | |||||
GGTAAGCAGCAGGTAAGTTTTAGCGCCATCATTACGCCATAATGCACCATACTCCCCACCTATCATTCGAATCTGATTACCACCACGCGCTACAATTTCGTCTGTGGCAAAAAGTTTTTTGCACGACAAGTTATCGTTAACGATTAACGAATGAGACTCATAAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1431283‑1431062‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGT < NC_000913/1469240‑1469030 GGTAAGCAGCAGGTAAGTTTTAGCGCCATCATTACACCATAATGCACCATACTCCCCACCTATCATTCGAATCTGCTTACCACCACGCGCTACAATTTCGTCTGTGGCAAAAAGTTTTTTGCACGACAAGTTATCGTTAACGATTAACGAATGAGACTCATAAAAACCACGCCCACTCTTAAAATCACGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACT > 1:159616/1‑228 ATTACGCCATAATGCACCATACTCCCCACCTATCATTCGAATCTGATTACCTCCACGCGCTACAATTTCGTCTGTGGCAAAAAGTTTTTTGCACGACAAGTTAGCGTTAACGATTAACGAATGAGACTCATAAAAACCACGCCCACTCTGAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATC < 1:394418/211‑1 GCCATAATGCACCATACTCCCCACCTATCATTCGAATCTGATTACCACCACGCGATACAATTTCGTTTGTGGCAAAAAGTTTTTTGCACGACAAGTTATCGTTACCGATTAAAGAATGAGACTCATAAAAACCACGCCCACTCTTAAACTCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACT > 1:62835/1‑250 TATCATTCGAATCTGATTACCACCACGCGCTACAATTTCGTCTGTGGCAAAACGGTTATTGCACAACAAGTTATCGTTAACGATTCACGAATGAGACTCATAAAAACCCAGCCAACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑AC > 1:196792/1‑167 CTACAATTTCGTCTGTGGCAAAAAGTTTTTTGCACGACAAGTTATCGTTAATGATTAACGAATGAGACTAATAAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCCGTCGCCGGTAG‑CCTGGCCCCCTGTATCTCCAGCCAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAA > 1:432872/1‑250 GTCTGTGGCAAAAAGTTTTTTGCACGACAAGTTATCGTTAACGATTAACGAATGATACTCATAAAACCCACGCCCACTCTTCAAATCAAGGATCACGTCCGCCGCGATACATTCAGTCGACGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACA > 1:404483/1‑213 GTTTTTTGCACGACAAGTTATCGTTAACTATTAACGAATGAGACTCATAAAAACCGCGCCCCCTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGGATCTCCAGACAACCAATATCCCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGAGCCGGAGAAACGCAGAAGGCGTACCACACCGGA > 1:239682/1‑250 GCACGACAAGTTATCGTTAACGATTAACGAATGAGACTCATAAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGGAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTGAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATGGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCG < 1:241201/251‑1 AACGAAGGAGACTCATAAAAACCACGCCCACTCTTAAAAGCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACGAGTCATTGGAGAACATATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTTTTCAGCAGAGCTTTGAAC < 1:192579/250‑1 TGAGACTCATAAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACT < 1:184796/146‑1 TCATAAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAGCAC‑GGCCCCATGACTCTCAAGACAACCAATATCACTTAAATAAGTGATCGTCTTAATACTAGTTTTTAGACTAGTC > 1:215475/1‑144 ATAAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACG < 1:220624/183‑1 nAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGACGCGATACATTCAGTCGCCGGTAG‑AATGGCCCCCTGACTCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTATACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGAAGAGCTTTGAACCGGGGATGACGGTCTCC > 1:47525/2‑251 ttcctatccCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCCCAATTGTTCAGTAGAGCTTTGAACCGGGGATGACGGTCTCC < 1:1656/241‑1 GCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACCTTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACCACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTT > 1:392486/1‑121 CTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTn < 1:89240/126‑2 CTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCTCTTAAATATGTGATAGTCTTAATACTAGTTGTTAGTCTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCC < 1:333547/156‑1 CTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAG < 1:371935/208‑1 AAATCAAGGATAACGTCCGCCGCGATACATGCAGTCGCCGGTAG‑CCTGGCCCCATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTC > 1:29721/1‑120 AATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGT < 1:372174/251‑1 CAAGGATAACGTCCGCCGCGATACATGCAGTCGCCGGTAG‑ACTGGCCCCCTGAATCGCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAGGTCTTAGGGGCGGAGAAACGCAGACGGCGTACC < 1:135051/170‑1 GGTAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAGAAGTGATAGTCTTAATACTATTTTTTAGAC < 1:125653/76‑1 GGTAAGCAGCAGGTAAGTTTTAGCGCCATCATTACGCCATAATGCACCATACTCCCCACCTATCATTCGAATCTGATTACCACCACGCGCTACAATTTCGTCTGTGGCAAAAAGTTTTTTGCACGACAAGTTATCGTTAACGATTAACGAATGAGACTCATAAAAACCACGCCCACTCTTAAAATCAAGGATAACGTCCGCCGCGATACATTCAGTCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1431283‑1431062‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAG‑ACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGT < NC_000913/1469240‑1469030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |