| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,397,239 | Δ7,315 bp | IS5‑mediated | ynaJ–[abgA] | ynaJ, uspE, fnr, ogt, abgT, abgB, [abgA] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1396248–1397239 | 1404553 | 7315–8306 | 2 [1] | [0] 16 | [insH4]–[abgA] | [insH4],ynaJ,uspE,fnr,ogt,abgT,abgB,[abgA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1404554 = | 0 (0.000) | 16 (1.270) | 13/310 | 0.1 | 100% | coding (12/1311 nt) | abgA | p‑aminobenzoyl‑glutamate hydrolase subunit A |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
CGCGTTGTAGAGTGAATTCATCAGGTAATCCCATCCGGCTACTTTCATTAACTACTTCGCGACCCAGCGCCAGTGAATAGCCGAGCTGGTGCAATTCTTCCGCAACAAGGGTGGCAGTGCGGAATTCCACCCAGCCAGACTCTGCATAGTGATGAAAATCACGTCGCCAGTGCGATAATTTTGGGGCAAGCGAATTAACAAATTGATTCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTAACCGTTCATAAATTACCCTGACACAATCATCTGCATTAAAGTAGATGCCAGTTTCTTTGGTCTGATAAATAACGGTTATCGGTGGCGTCATGGCTTTTCAGGTAAAAATTCATCAAATTCGGGCTTTTGTTGAAGTG > NC_000913/1404346‑1404788 | tcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataactccttaaatggctaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagcctagaagaatttccccgcttagtcgcaccttccCAAAGACTCCATACCCTTTCCCGtcatc > 1:209089‑M1/209‑236 (MQ=255) acctgtttcgggcggaccaaatgatacgtcagtgggagagatctcacgaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcgtctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcaCAAAGAc > 1:214692‑M1/197‑203 (MQ=255) ggaccaaatgatacgtcagtgggagagatctcactaaaacctggggataaagcattaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaacatcggctcaaacatgcagaaatgacatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCAAAGACTCCa < 1:249470‑M1/11‑1 (MQ=255) gatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCAAAGACTCCATAACCTTTCCCGACATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTc < 1:5750‑M1/89‑1 (MQ=255) nactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTa < 1:73785‑M1/98‑1 (MQ=255) actggggatagcgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacattaagaaatgaaatgactgagtcagccgagaagaatttcccctcttagtcgcaccttctCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAg > 1:216322‑M1/145‑206 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGGTTTTACTTATCACTAACTGATTTTTCACAGTTTTAACCGTTCATAAATTACCCTGACACAATCATCt > 1:125701‑M1/122‑251 (MQ=255) gcatttacgggcgaaaaaatcggctcaaacatgaagaactgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCCAACACTCCATAACCTTTCACGTCCTCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATCGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTAACCGTTCATAAATTACCCTGACACAATCATCTGCCTTAAAGTAGATGCCAGTTTATTTGGTCt < 1:39868‑M1/161‑1 (MQ=255) naaaaaatcggctcaaacatgaagacatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCAAAGa < 1:71849‑M1/6‑1 (MQ=255) gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCAAAGACTCCATAACATTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTCGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTCACCGTTCATAAATTACCCTGACACAATCATCTGCATTAAAGTAGATGCCAGTTTCttt < 1:210353‑M1/156‑1 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCAAAGACTCCATAACCTTTc > 1:276531‑M1/66‑85 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGAt > 1:17693‑M1/62‑121 (MQ=255) aaatgactgagtgagccgagaagaatttccccgcttattcgcacattccCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGAGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTAATCGTTCATAAATTACCCTGACACAATCATATGCATTAAAGTAGATGCCAGTTTCTTTGGTCTGATAAATAACGGTTATCGGTGGCGTCATGGCTTTTCAGGt < 1:293868‑M1/201‑1 (MQ=255) ntcagccgagaagaatttccccgcttattcgcaccttcaCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTAACCGTTCATAAATTACCCTGACACAATCATCTGCATTAAAGTAGATGCCAGTTTCTTTGGTc < 1:57221‑M1/160‑1 (MQ=255) cttattcgcaccttccCAAAGACTCCATAACATTTACCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTAACCGTTCATAAATTACCCTGACACAATCATCTGCATTAAAGTAGATGCCAGTTTCTTTGGTATGATAAATAACGGTTATCGGTGGCGTCATGGCTTTTCAGGTAAAAATTCATCAAATTCGGGCTTTTGTTGAAGTg < 1:98813‑M1/235‑1 (MQ=255) tattcgcaccttccCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTAACCGTTCATAAATTACCCTGACACAATCATCTGCATTAAAGTAGATGCCAGTTTCTTTGGTCTGATAAATAACGGTTATCGGTGGCGTCATGGCTTTTCAGGTAAAAATTCATCAAATTCGGGCTTTTGTTGAAGNg > 1:226638‑M1/15‑249 (MQ=255) | CGCGTTGTAGAGTGAATTCATCAGGTAATCCCATCCGGCTACTTTCATTAACTACTTCGCGACCCAGCGCCAGTGAATAGCCGAGCTGGTGCAATTCTTCCGCAACAAGGGTGGCAGTGCGGAATTCCACCCAGCCAGACTCTGCATAGTGATGAAAATCACGTCGCCAGTGCGATAATTTTGGGGCAAGCGAATTAACAAATTGATTCAAAGACTCCATAACCTTTCCCGTCATCAGTAAAAAGTGTGACCCGGTTCACGTAGCGATAGTTTTTACTTATCACTAACTGATTTTTCACAGTTTTAACCGTTCATAAATTACCCTGACACAATCATCTGCATTAAAGTAGATGCCAGTTTCTTTGGTCTGATAAATAACGGTTATCGGTGGCGTCATGGCTTTTCAGGTAAAAATTCATCAAATTCGGGCTTTTGTTGAAGTG > NC_000913/1404346‑1404788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |