Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,397,239	Δ7,315 bp	IS5‑mediated	ynaJ–[abgA]	ynaJ, uspE, fnr, ogt, abgT, abgB, [abgA]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1396248–1397239	1404553	7315–8306	2 [1]	[0] 16	[insH4]–[abgA]	[insH4],ynaJ,uspE,fnr,ogt,abgT,abgB,[abgA]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1404554 =	0 (0.000)	16 (1.270)	13/310	0.1	100%	coding (12/1311 nt)	abgA	p‑aminobenzoyl‑glutamate hydrolase subunit A
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

GAAAAAAAACTTCGATTGTCATGATGAGCATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCC  >  NC_000913/2101502‑2101993                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     gAAAAAAAACTTCGATTGTCATGATGAGCAATATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGATAAGCCTCAAGCACAGGTCAATATCTTCTCAGTACATTAAGTAACCTTGATCTCATCCATTTACACGCGAAAAATCTGAAAAACGTACCAGCATAAATGATGCTGTGCACCAATCAGCAGCCGTATCATAATAGATACTTTCTTTAGTAATTTTTGTTTTATTaagga                                                                                                                                                                                                                                                    <  1:199375/250‑1 (MQ=255)                                                       ncATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGACCCTAAAGTAAACTTGATCGAAGCCATTTACACGCACAACCTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaag                                                                                                                                                                                                                                                      >  1:29763/2‑194 (MQ=255)                                                              gAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAGACGTACCAGCATAAATTATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTGCTTTAGGAATTGTTGTTGTATTAAGTAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                                                                                                                                      <  1:293619/251‑1 (MQ=255)                                                                         ccagccagGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCGTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                                                                                                                                   <  1:93714/243‑1 (MQ=255)                                                                                      gCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAACTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                                                                                                                               >  1:198863/1‑234 (MQ=255)                                                                                                                           gTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                                                                                                                                                                      <  1:19349/206‑1 (MQ=255)                                                                                                                                cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGACGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg                                                                                                                    >  1:2944/1‑251 (MQ=255)                                                                                                                                                               tGAAAAACGTACCAGCATAAATGAGCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTGCTTTAGGAATTGTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCGTCTCGGCTGACGCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                                                                                                                                         <  1:46398/167‑1 (MQ=25)                                                                                                                                                                  aaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                                                                                                                                   <  1:277726/154‑1 (MQ=255)                                                                                                                                                                                   aTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTc                                                                 <  1:87574/251‑1 (MQ=255)                                                                                                                                                                                                ccNATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAANGAAGGTGCGNNTANGCGGGNANNNTNNNCTNGGCTGACTCAGTCATTTCANTTNNTCATGTNTGAGCCGATTTTTTCTCCCGTAAATg                                                                                                                                                              <  2:66073/145‑1 (MQ=21)                                                                                                                                                                                                ccAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg                                                                                                                                                              >  1:66073/1‑145 (MQ=255)                                                                                                                                                                                                     caacaaCCGTATCAGAATAGATACTTTCTTTAGGTATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGTAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAGTTAGACCTTTTCTTCCCCAGTTAAGGCGCTAGCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTgg                                                <  1:146737/250‑1 (MQ=17)                                                                                                                                                                                                                                              gTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATATCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATTGCCAGTTGGTTATCGTTTTTCAGc       >  1:283472/1‑250 (MQ=17)                                                                                                                                                                                                                                              gTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCGTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAg                                                                                                        <  1:89189/153‑1 (MQ=21)                                                                                                                                                                                                                                                  tattaAGGAAGGTGCGAATAAGCGGGGAAACTCTTCTCAGCCGACTCAGTCCTTTCATTACATCATGTTCGAGCCGATTTTTTCTACCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTAAGATCTCTCCCACTGCCGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGATATCGTTTTTCAGCAAccc  >  1:122863/1‑251 (MQ=11)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     GAAAAAAAACTTCGATTGTCATGATGAGCATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCC  >  NC_000913/2101502‑2101993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.