mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 321,260 | A→T | intergenic (+179/‑348) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| JC JC | 1,995,620 | IS5 (–) +4 bp | intergenic (‑261/‑32) | uvrY ← / → yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,416,241 | T→C | S18G (AGC→GGC) | yjfN ← | protease activator YjfN |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 354596 | 354689 | 94 | 127 [0] | [46] 48 | prpE/codB | propionyl‑CoA synthetase/cytosine transporter |
| * | * | ÷ | NC_000913 | 361657 | 362203 | 547 | 152 [0] | [0] 140 | [lacA]–[lacY] | [lacA],[lacY] |
| * | * | ÷ | NC_000913 | 3423849–3424234 | 3424492–3424239 | 6–644 | 48 [47] | [47] 50 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3883285 | 3883552 | 268 | 48 [47] | [47] 50 | dnaA | chromosomal replication initiator protein DnaA |
| * | * | ÷ | NC_000913 | 4415874 | 4416032 | 159 | 49 [47] | [47] 51 | [aidB]–[yjfN] | [aidB],[yjfN] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 151 (1.170) | 86/580 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 361656 | 0 (0.000) | coding (205/612 nt) | lacA | galactoside O‑acetyltransferase | |||||
| * | ? | NC_000913 | 70062 = | 124 (0.960) | 118 (0.990) +22 bp |
73/538 | 0.2 | 52.2% | intergenic (‑14/‑325) | araB/araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 367520 | 110 (0.850) | intergenic (‑10/+67) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR | |||||
| * | ? | NC_000913 | = 71265 | 155 (1.200) | 126 (0.970) | 60/582 | 0.7 | 61.9% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 354595 | 0 (0.000) | intergenic (+3/‑327) | prpE/codB | propionyl‑CoA synthetase/cytosine transporter | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 139 (1.070) | 94/582 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 362204 = | 0 (0.000) | coding (976/1254 nt) | lacY | lactose permease | |||||
| * | ? | NC_000913 | = 1207805 | 84 (0.650) | 45 (0.370) | 31/550 | 2.8 | 31.1% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 120 (0.980) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 179 (1.400) | 102/574 | 0.0 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||