#=GENOME_DIFF	1.0
#=CREATED	03:43:06 11 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME9771_S43_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9771_S43_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9771_S43_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9771_S43_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME9771_S43_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	646531739
#=CONVERTED-READS	2214972
#=INPUT-BASES	646671480
#=INPUT-READS	2215450
#=MAPPED-BASES	599933195
#=MAPPED-READS	2047217
DEL	1	188,202	NC_000913	257908	776
SNP	2	25	NC_000913	309381	T
SNP	3	26	NC_000913	309985	A
SNP	4	27	NC_000913	321260	T
DEL	5	191,229	NC_000913	1978503	776
MOB	6	226,230	NC_000913	1995620	IS5	-1	4
DEL	7	142,143	NC_000913	2173363	2
INS	8	169	NC_000913	3560455	G
INS	9	180,181	NC_000913	4296381	GC
SNP	10	184	NC_000913	4416241	C
RA	11	.	NC_000913	70289	0	G	T	bias_e_value=1964830	bias_p_value=0.423303	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.1	fisher_strand_p_value=0.148438	frequency=5.412e-01	ks_quality_p_value=0.970936	major_base=T	major_cov=63/88	major_frequency=5.412e-01	minor_base=G	minor_cov=65/63	new_cov=63/88	polymorphism_frequency=5.412e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/63	total_cov=129/151
RA	12	.	NC_000913	70371	0	T	C	bias_e_value=3920190	bias_p_value=0.844567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.8	fisher_strand_p_value=0.497117	frequency=5.323e-01	ks_quality_p_value=1	major_base=C	major_cov=80/85	major_frequency=5.323e-01	minor_base=T	minor_cov=76/69	new_cov=80/85	polymorphism_frequency=5.323e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/69	total_cov=157/154
RA	13	.	NC_000913	70434	0	C	T	bias_e_value=4621680	bias_p_value=0.995698	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.8	fisher_strand_p_value=0.908687	frequency=5.066e-01	ks_quality_p_value=1	major_base=T	major_cov=75/79	major_frequency=5.066e-01	minor_base=C	minor_cov=75/75	new_cov=75/79	polymorphism_frequency=5.066e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=75/75	total_cov=150/155
RA	14	.	NC_000913	70581	0	C	T	bias_e_value=4616840	bias_p_value=0.994655	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=0.898407	frequency=4.776e-01	ks_quality_p_value=1	major_base=C	major_cov=64/64	major_frequency=5.224e-01	minor_base=T	minor_cov=57/60	new_cov=57/60	polymorphism_frequency=4.776e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/64	total_cov=121/124
RA	15	.	NC_000913	70740	0	T	G	bias_e_value=4517530	bias_p_value=0.973258	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.777832	frequency=4.826e-01	ks_quality_p_value=1	major_base=T	major_cov=51/53	major_frequency=5.174e-01	minor_base=G	minor_cov=45/52	new_cov=45/52	polymorphism_frequency=4.826e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=51/53	total_cov=96/105
RA	16	.	NC_000913	71079	0	C	T	bias_e_value=2792970	bias_p_value=0.601718	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.5	fisher_strand_p_value=0.301292	frequency=4.897e-01	ks_quality_p_value=0.842142	major_base=C	major_cov=65/59	major_frequency=5.103e-01	minor_base=T	minor_cov=71/48	new_cov=71/48	polymorphism_frequency=4.897e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/59	total_cov=136/107
RA	17	.	NC_000913	71082	0	T	C	bias_e_value=2209530	bias_p_value=0.476022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.0	fisher_strand_p_value=0.303399	frequency=4.816e-01	ks_quality_p_value=0.569268	major_base=T	major_cov=66/61	major_frequency=5.184e-01	minor_base=C	minor_cov=70/48	new_cov=70/48	polymorphism_frequency=4.816e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=66/61	total_cov=136/109
RA	18	.	NC_000913	71085	0	T	C	bias_e_value=1591350	bias_p_value=0.342841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.202388	frequency=4.776e-01	ks_quality_p_value=0.521424	major_base=T	major_cov=65/63	major_frequency=5.224e-01	minor_base=C	minor_cov=69/48	new_cov=69/48	polymorphism_frequency=4.776e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/63	total_cov=135/112
RA	19	.	NC_000913	71109	0	T	C	bias_e_value=478374	bias_p_value=0.103061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=0.0411042	frequency=4.777e-01	ks_quality_p_value=0.516782	major_base=T	major_cov=64/65	major_frequency=5.223e-01	minor_base=C	minor_cov=74/44	new_cov=74/44	polymorphism_frequency=4.777e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/65	total_cov=138/109
RA	20	.	NC_000913	71175	0	A	G	bias_e_value=370076	bias_p_value=0.0797293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.0	fisher_strand_p_value=0.114147	frequency=4.797e-01	ks_quality_p_value=0.135038	major_base=A	major_cov=65/76	major_frequency=5.203e-01	minor_base=G	minor_cov=73/57	new_cov=73/57	polymorphism_frequency=4.797e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/76	total_cov=138/133
RA	21	.	NC_000913	71214	0	T	C	bias_e_value=299516	bias_p_value=0.0645278	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.9	fisher_strand_p_value=0.0123951	frequency=4.702e-01	ks_quality_p_value=0.958172	major_base=T	major_cov=60/91	major_frequency=5.298e-01	minor_base=C	minor_cov=74/60	new_cov=74/60	polymorphism_frequency=4.702e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=60/91	total_cov=134/151
RA	22	.	NC_000913	141849	0	C	A	bias_e_value=1.6113e-09	bias_p_value=3.4714e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.8	fisher_strand_p_value=8.61539e-18	frequency=3.133e-01	ks_quality_p_value=1	major_base=C	major_cov=40/74	major_frequency=6.867e-01	minor_base=A	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=3.133e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=40/74	total_cov=92/74
RA	23	.	NC_000913	180048	0	C	A	bias_e_value=0.0026893	bias_p_value=5.79384e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.8	fisher_strand_p_value=2.27138e-11	frequency=2.568e-01	ks_quality_p_value=1	major_base=C	major_cov=49/61	major_frequency=7.432e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.568e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=49/61	total_cov=87/61
RA	24	.	NC_000913	225579	0	C	A	bias_e_value=0.0133088	bias_p_value=2.86725e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.3	fisher_strand_p_value=1.20264e-10	frequency=2.374e-01	ks_quality_p_value=1	major_base=C	major_cov=45/61	major_frequency=7.626e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.374e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=45/61	total_cov=78/62
RA	25	.	NC_000913	309381	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=447.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=64/60	major_frequency=9.920e-01	minor_base=C	minor_cov=1/0	new_cov=64/60	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=65/60
RA	26	.	NC_000913	309985	0	T	A	bias_e_value=3709480	bias_p_value=0.799172	consensus_score=479.4	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/81	major_frequency=9.931e-01	minor_base=C	minor_cov=1/0	new_cov=62/81	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/81
RA	27	.	NC_000913	321260	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=619.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=77/97	major_frequency=9.831e-01	minor_base=C	minor_cov=1/2	new_cov=77/97	polymorphism_frequency=9.831e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=78/100
RA	28	.	NC_000913	430299	0	C	A	bias_e_value=204.355	bias_p_value=4.40263e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.9	fisher_strand_p_value=3.22678e-06	frequency=2.167e-01	ks_quality_p_value=1	major_base=C	major_cov=52/42	major_frequency=7.833e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.167e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=52/42	total_cov=78/42
RA	29	.	NC_000913	442025	0	C	A	bias_e_value=0.000911932	bias_p_value=1.96467e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.2	fisher_strand_p_value=7.37692e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=25/55	major_frequency=7.273e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.727e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=25/55	total_cov=55/55
RA	30	.	NC_000913	454448	0	C	A	bias_e_value=1.3527e-11	bias_p_value=2.91425e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=550.1	fisher_strand_p_value=6.44922e-20	frequency=2.000e-01	ks_quality_p_value=1	major_base=C	major_cov=54/126	major_frequency=8.000e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=2.000e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=54/126	total_cov=99/126
RA	31	.	NC_000913	571586	0	G	T	bias_e_value=9.6484e-10	bias_p_value=2.07866e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=463.6	fisher_strand_p_value=5.0924e-18	frequency=2.344e-01	ks_quality_p_value=1	major_base=G	major_cov=102/58	major_frequency=7.656e-01	minor_base=T	minor_cov=0/49	new_cov=0/49	polymorphism_frequency=2.344e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=102/58	total_cov=102/107
RA	32	.	NC_000913	581115	0	C	A	bias_e_value=35988.2	bias_p_value=0.00775333	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.3	fisher_strand_p_value=0.00097768	frequency=2.276e-01	ks_quality_p_value=1	major_base=C	major_cov=59/36	major_frequency=7.724e-01	minor_base=A	minor_cov=7/21	new_cov=7/21	polymorphism_frequency=2.276e-01	polymorphism_score=60.7	prediction=polymorphism	ref_cov=59/36	total_cov=66/58
RA	33	.	NC_000913	581121	0	A	C	bias_e_value=290.842	bias_p_value=6.26592e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.5	fisher_strand_p_value=5.90393e-06	frequency=2.256e-01	ks_quality_p_value=0.800221	major_base=A	major_cov=66/37	major_frequency=7.744e-01	minor_base=C	minor_cov=5/25	new_cov=5/25	polymorphism_frequency=2.256e-01	polymorphism_score=91.4	prediction=polymorphism	ref_cov=66/37	total_cov=71/62
RA	34	.	NC_000913	581127	0	G	A	bias_e_value=164.194	bias_p_value=3.5374e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.9	fisher_strand_p_value=2.56067e-06	frequency=2.464e-01	ks_quality_p_value=0.995273	major_base=G	major_cov=67/37	major_frequency=7.536e-01	minor_base=A	minor_cov=6/28	new_cov=6/28	polymorphism_frequency=2.464e-01	polymorphism_score=99.4	prediction=polymorphism	ref_cov=67/37	total_cov=73/66
RA	35	.	NC_000913	581130	0	G	A	bias_e_value=437.355	bias_p_value=9.4224e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.6	fisher_strand_p_value=7.34924e-06	frequency=2.576e-01	ks_quality_p_value=1	major_base=G	major_cov=61/37	major_frequency=7.424e-01	minor_base=A	minor_cov=6/28	new_cov=6/28	polymorphism_frequency=2.576e-01	polymorphism_score=98.5	prediction=polymorphism	ref_cov=61/37	total_cov=67/68
RA	36	.	NC_000913	581139	0	C	A	bias_e_value=10410.3	bias_p_value=0.00224279	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.5	fisher_strand_p_value=0.000430363	frequency=2.721e-01	ks_quality_p_value=0.558344	major_base=C	major_cov=59/40	major_frequency=7.279e-01	minor_base=A	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.721e-01	polymorphism_score=96.5	prediction=polymorphism	ref_cov=59/40	total_cov=68/68
RA	37	.	NC_000913	581141	0	G	A	bias_e_value=1564.35	bias_p_value=0.000337025	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.4	fisher_strand_p_value=2.94846e-05	frequency=2.593e-01	ks_quality_p_value=0.999894	major_base=G	major_cov=61/39	major_frequency=7.407e-01	minor_base=A	minor_cov=7/28	new_cov=7/28	polymorphism_frequency=2.593e-01	polymorphism_score=101.1	prediction=polymorphism	ref_cov=61/39	total_cov=68/68
RA	38	.	NC_000913	581145	0	C	T	bias_e_value=3820.07	bias_p_value=0.000822998	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.7	fisher_strand_p_value=7.87628e-05	frequency=2.482e-01	ks_quality_p_value=1	major_base=C	major_cov=62/44	major_frequency=7.518e-01	minor_base=T	minor_cov=7/28	new_cov=7/28	polymorphism_frequency=2.482e-01	polymorphism_score=89.5	prediction=polymorphism	ref_cov=62/44	total_cov=69/72
RA	39	.	NC_000913	581154	0	A	G	bias_e_value=6966.21	bias_p_value=0.0015008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.7	fisher_strand_p_value=0.000153924	frequency=2.411e-01	ks_quality_p_value=0.996726	major_base=A	major_cov=62/45	major_frequency=7.589e-01	minor_base=G	minor_cov=7/27	new_cov=7/27	polymorphism_frequency=2.411e-01	polymorphism_score=87.8	prediction=polymorphism	ref_cov=62/45	total_cov=70/73
RA	40	.	NC_000913	581175	0	T	C	bias_e_value=31998.1	bias_p_value=0.00689368	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.6	fisher_strand_p_value=0.000854804	frequency=2.553e-01	ks_quality_p_value=1	major_base=T	major_cov=58/47	major_frequency=7.447e-01	minor_base=C	minor_cov=8/28	new_cov=8/28	polymorphism_frequency=2.553e-01	polymorphism_score=97.8	prediction=polymorphism	ref_cov=58/47	total_cov=66/77
RA	41	.	NC_000913	581178	0	T	G	bias_e_value=26197.3	bias_p_value=0.00564397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.5	fisher_strand_p_value=0.00076263	frequency=2.687e-01	ks_quality_p_value=0.89245	major_base=T	major_cov=55/43	major_frequency=7.313e-01	minor_base=G	minor_cov=8/28	new_cov=8/28	polymorphism_frequency=2.687e-01	polymorphism_score=104.8	prediction=polymorphism	ref_cov=55/43	total_cov=64/72
RA	42	.	NC_000913	581196	0	C	G	bias_e_value=54319.6	bias_p_value=0.0117026	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.8	fisher_strand_p_value=0.00179599	frequency=2.707e-01	ks_quality_p_value=0.873793	major_base=C	major_cov=54/43	major_frequency=7.293e-01	minor_base=G	minor_cov=9/27	new_cov=9/27	polymorphism_frequency=2.707e-01	polymorphism_score=117.9	prediction=polymorphism	ref_cov=54/43	total_cov=64/71
RA	43	.	NC_000913	581199	0	A	C	bias_e_value=37675	bias_p_value=0.00811671	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.3	fisher_strand_p_value=0.00103032	frequency=2.741e-01	ks_quality_p_value=1	major_base=A	major_cov=55/43	major_frequency=7.259e-01	minor_base=C	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.741e-01	polymorphism_score=109.9	prediction=polymorphism	ref_cov=55/43	total_cov=64/71
RA	44	.	NC_000913	581202	0	T	A	bias_e_value=108448	bias_p_value=0.0233641	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.4	fisher_strand_p_value=0.00351938	frequency=2.701e-01	ks_quality_p_value=0.998092	major_base=T	major_cov=53/47	major_frequency=7.299e-01	minor_base=A	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.701e-01	polymorphism_score=144.8	prediction=polymorphism	ref_cov=53/47	total_cov=62/75
RA	45	.	NC_000913	581206	0	A	G	bias_e_value=109551	bias_p_value=0.0236017	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.2	fisher_strand_p_value=0.00370704	frequency=2.681e-01	ks_quality_p_value=0.958921	major_base=A	major_cov=53/48	major_frequency=7.319e-01	minor_base=G	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.681e-01	polymorphism_score=103.3	prediction=polymorphism	ref_cov=53/48	total_cov=62/76
RA	46	.	NC_000913	581208	0	T	A	bias_e_value=84981	bias_p_value=0.0183084	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.6	fisher_strand_p_value=0.00370704	frequency=2.681e-01	ks_quality_p_value=0.711919	major_base=T	major_cov=53/48	major_frequency=7.319e-01	minor_base=A	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.681e-01	polymorphism_score=145.6	prediction=polymorphism	ref_cov=53/48	total_cov=62/76
RA	47	.	NC_000913	581214	0	T	C	bias_e_value=65529.5	bias_p_value=0.0141177	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.7	fisher_strand_p_value=0.00370704	frequency=2.681e-01	ks_quality_p_value=0.52602	major_base=T	major_cov=53/48	major_frequency=7.319e-01	minor_base=C	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.681e-01	polymorphism_score=106.2	prediction=polymorphism	ref_cov=53/48	total_cov=62/76
RA	48	.	NC_000913	581220	0	C	T	bias_e_value=15582	bias_p_value=0.003357	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.5	fisher_strand_p_value=0.00366019	frequency=2.721e-01	ks_quality_p_value=0.103278	major_base=C	major_cov=52/47	major_frequency=7.279e-01	minor_base=T	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.721e-01	polymorphism_score=114.1	prediction=polymorphism	ref_cov=52/47	total_cov=61/75
RA	49	.	NC_000913	581223	0	C	T	bias_e_value=91173.8	bias_p_value=0.0196425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.3	fisher_strand_p_value=0.00339416	frequency=2.782e-01	ks_quality_p_value=0.84422	major_base=C	major_cov=51/45	major_frequency=7.218e-01	minor_base=T	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.782e-01	polymorphism_score=114.4	prediction=polymorphism	ref_cov=51/45	total_cov=60/73
RA	50	.	NC_000913	581226	0	G	A	bias_e_value=91173.8	bias_p_value=0.0196425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.9	fisher_strand_p_value=0.00339416	frequency=2.782e-01	ks_quality_p_value=0.84422	major_base=G	major_cov=51/45	major_frequency=7.218e-01	minor_base=A	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=2.782e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=51/45	total_cov=60/73
RA	51	.	NC_000913	581227	0	A	G	bias_e_value=188648	bias_p_value=0.0406425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.3	fisher_strand_p_value=0.00733436	frequency=2.879e-01	ks_quality_p_value=0.924543	major_base=A	major_cov=49/45	major_frequency=7.121e-01	minor_base=G	minor_cov=10/28	new_cov=10/28	polymorphism_frequency=2.879e-01	polymorphism_score=106.8	prediction=polymorphism	ref_cov=49/45	total_cov=59/73
RA	52	.	NC_000913	581229	0	C	T	bias_e_value=552050	bias_p_value=0.118934	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.7	fisher_strand_p_value=0.0260559	frequency=3.083e-01	ks_quality_p_value=0.977331	major_base=C	major_cov=39/44	major_frequency=6.917e-01	minor_base=T	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=3.083e-01	polymorphism_score=116.2	prediction=polymorphism	ref_cov=39/44	total_cov=48/73
RA	53	.	NC_000913	581232	0	C	T	bias_e_value=380058	bias_p_value=0.0818798	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.5	fisher_strand_p_value=0.0268247	frequency=3.058e-01	ks_quality_p_value=0.593916	major_base=C	major_cov=39/45	major_frequency=6.942e-01	minor_base=T	minor_cov=9/28	new_cov=9/28	polymorphism_frequency=3.058e-01	polymorphism_score=113.3	prediction=polymorphism	ref_cov=39/45	total_cov=48/73
RA	54	.	NC_000913	581241	0	G	T	bias_e_value=2965360	bias_p_value=0.638858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.9	fisher_strand_p_value=0.281912	frequency=3.453e-01	ks_quality_p_value=1	major_base=G	major_cov=44/47	major_frequency=6.547e-01	minor_base=T	minor_cov=18/30	new_cov=18/30	polymorphism_frequency=3.453e-01	polymorphism_score=126.1	prediction=polymorphism	ref_cov=44/47	total_cov=62/77
RA	55	.	NC_000913	581250	0	T	C	bias_e_value=2626900	bias_p_value=0.565941	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.0	fisher_strand_p_value=0.374746	frequency=3.841e-01	ks_quality_p_value=0.609972	major_base=T	major_cov=38/47	major_frequency=6.159e-01	minor_base=C	minor_cov=19/34	new_cov=19/34	polymorphism_frequency=3.841e-01	polymorphism_score=164.1	prediction=polymorphism	ref_cov=38/47	total_cov=57/81
RA	56	.	NC_000913	581253	0	T	C	bias_e_value=3437020	bias_p_value=0.740474	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.8	fisher_strand_p_value=0.374746	frequency=3.841e-01	ks_quality_p_value=0.994341	major_base=T	major_cov=38/47	major_frequency=6.159e-01	minor_base=C	minor_cov=19/34	new_cov=19/34	polymorphism_frequency=3.841e-01	polymorphism_score=142.9	prediction=polymorphism	ref_cov=38/47	total_cov=57/81
RA	57	.	NC_000913	581259	0	A	G	bias_e_value=4470590	bias_p_value=0.963146	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.3	fisher_strand_p_value=1	frequency=4.069e-01	ks_quality_p_value=0.741091	major_base=A	major_cov=36/50	major_frequency=5.931e-01	minor_base=G	minor_cov=25/34	new_cov=25/34	polymorphism_frequency=4.069e-01	polymorphism_score=179.3	prediction=polymorphism	ref_cov=36/50	total_cov=61/84
RA	58	.	NC_000913	581275	0	G	A	bias_e_value=4513470	bias_p_value=0.972383	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.6	fisher_strand_p_value=0.870846	frequency=4.356e-01	ks_quality_p_value=0.889227	major_base=G	major_cov=36/56	major_frequency=5.644e-01	minor_base=A	minor_cov=26/45	new_cov=26/45	polymorphism_frequency=4.356e-01	polymorphism_score=232.7	prediction=polymorphism	ref_cov=36/56	total_cov=62/101
RA	59	.	NC_000913	581286	0	G	C	bias_e_value=4234530	bias_p_value=0.91229	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.5	fisher_strand_p_value=0.614989	frequency=4.295e-01	ks_quality_p_value=0.994423	major_base=G	major_cov=33/56	major_frequency=5.705e-01	minor_base=C	minor_cov=22/45	new_cov=22/45	polymorphism_frequency=4.295e-01	polymorphism_score=216.8	prediction=polymorphism	ref_cov=33/56	total_cov=59/104
RA	60	.	NC_000913	581289	0	A	G	bias_e_value=4600180	bias_p_value=0.991065	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.4	fisher_strand_p_value=0.869336	frequency=4.286e-01	ks_quality_p_value=1	major_base=A	major_cov=33/59	major_frequency=5.714e-01	minor_base=G	minor_cov=26/43	new_cov=26/43	polymorphism_frequency=4.286e-01	polymorphism_score=189.1	prediction=polymorphism	ref_cov=33/59	total_cov=59/104
RA	61	.	NC_000913	581290	0	C	A	bias_e_value=4585740	bias_p_value=0.987955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.0	fisher_strand_p_value=0.870236	frequency=4.277e-01	ks_quality_p_value=0.975435	major_base=C	major_cov=33/62	major_frequency=5.723e-01	minor_base=A	minor_cov=26/45	new_cov=26/45	polymorphism_frequency=4.277e-01	polymorphism_score=204.0	prediction=polymorphism	ref_cov=33/62	total_cov=59/107
RA	62	.	NC_000913	581291	0	G	A	bias_e_value=4601080	bias_p_value=0.99126	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.2	fisher_strand_p_value=0.870733	frequency=4.303e-01	ks_quality_p_value=1	major_base=G	major_cov=33/61	major_frequency=5.697e-01	minor_base=A	minor_cov=26/45	new_cov=26/45	polymorphism_frequency=4.303e-01	polymorphism_score=197.8	prediction=polymorphism	ref_cov=33/61	total_cov=59/107
RA	63	.	NC_000913	581295	0	T	C	bias_e_value=4632780	bias_p_value=0.998089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.0	fisher_strand_p_value=1	frequency=4.277e-01	ks_quality_p_value=0.938819	major_base=T	major_cov=34/61	major_frequency=5.723e-01	minor_base=C	minor_cov=26/45	new_cov=26/45	polymorphism_frequency=4.277e-01	polymorphism_score=221.7	prediction=polymorphism	ref_cov=34/61	total_cov=60/107
RA	64	.	NC_000913	581301	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.7	fisher_strand_p_value=1	frequency=4.277e-01	ks_quality_p_value=1	major_base=C	major_cov=34/61	major_frequency=5.723e-01	minor_base=T	minor_cov=26/45	new_cov=26/45	polymorphism_frequency=4.277e-01	polymorphism_score=223.5	prediction=polymorphism	ref_cov=34/61	total_cov=60/106
RA	65	.	NC_000913	581322	0	C	T	bias_e_value=1719670	bias_p_value=0.370486	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.3	fisher_strand_p_value=0.118146	frequency=5.196e-01	ks_quality_p_value=1	major_base=T	major_cov=50/56	major_frequency=5.196e-01	minor_base=C	minor_cov=35/63	new_cov=50/56	polymorphism_frequency=5.196e-01	polymorphism_score=312.1	prediction=polymorphism	ref_cov=35/63	total_cov=88/119
RA	66	.	NC_000913	581335	0	C	A	bias_e_value=2519370	bias_p_value=0.542775	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=0.213245	frequency=5.116e-01	ks_quality_p_value=1	major_base=A	major_cov=51/59	major_frequency=5.116e-01	minor_base=C	minor_cov=39/66	new_cov=51/59	polymorphism_frequency=5.116e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=39/66	total_cov=90/125
RA	67	.	NC_000913	581337	0	G	A	bias_e_value=1830120	bias_p_value=0.394282	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.6	fisher_strand_p_value=0.129536	frequency=5.139e-01	ks_quality_p_value=1	major_base=A	major_cov=52/59	major_frequency=5.139e-01	minor_base=G	minor_cov=38/67	new_cov=52/59	polymorphism_frequency=5.139e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=38/67	total_cov=90/126
RA	68	.	NC_000913	581380	0	C	G	bias_e_value=438262	bias_p_value=0.0944193	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.1	fisher_strand_p_value=0.0190294	frequency=4.907e-01	ks_quality_p_value=1	major_base=C	major_cov=39/70	major_frequency=5.093e-01	minor_base=G	minor_cov=55/50	new_cov=55/50	polymorphism_frequency=4.907e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=39/70	total_cov=94/122
RA	69	.	NC_000913	581381	0	A	G	bias_e_value=404507	bias_p_value=0.0871472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.6	fisher_strand_p_value=0.0197375	frequency=4.930e-01	ks_quality_p_value=0.872263	major_base=A	major_cov=39/70	major_frequency=5.070e-01	minor_base=G	minor_cov=55/51	new_cov=55/51	polymorphism_frequency=4.930e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=39/70	total_cov=94/122
RA	70	.	NC_000913	581388	0	G	A	bias_e_value=63340.2	bias_p_value=0.0136461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.9	fisher_strand_p_value=0.00322603	frequency=4.486e-01	ks_quality_p_value=0.581093	major_base=G	major_cov=39/63	major_frequency=5.514e-01	minor_base=A	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.486e-01	polymorphism_score=277.3	prediction=polymorphism	ref_cov=39/63	total_cov=89/97
RA	71	.	NC_000913	581392	0	T	C	bias_e_value=31153.4	bias_p_value=0.00671171	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.6	fisher_strand_p_value=0.00100173	frequency=4.536e-01	ks_quality_p_value=0.827672	major_base=T	major_cov=35/65	major_frequency=5.464e-01	minor_base=C	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.536e-01	polymorphism_score=262.0	prediction=polymorphism	ref_cov=35/65	total_cov=85/98
RA	72	.	NC_000913	581394	0	T	C	bias_e_value=34228.4	bias_p_value=0.00737418	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.1	fisher_strand_p_value=0.00100173	frequency=4.536e-01	ks_quality_p_value=0.921604	major_base=T	major_cov=35/65	major_frequency=5.464e-01	minor_base=C	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.536e-01	polymorphism_score=259.4	prediction=polymorphism	ref_cov=35/65	total_cov=85/98
RA	73	.	NC_000913	581397	0	T	C	bias_e_value=34694.5	bias_p_value=0.0074746	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.1	fisher_strand_p_value=0.00108163	frequency=4.511e-01	ks_quality_p_value=0.866825	major_base=T	major_cov=36/65	major_frequency=5.489e-01	minor_base=C	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.511e-01	polymorphism_score=262.6	prediction=polymorphism	ref_cov=36/65	total_cov=86/98
RA	74	.	NC_000913	581398	0	C	G	bias_e_value=34589	bias_p_value=0.00745188	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.0	fisher_strand_p_value=0.00100173	frequency=4.536e-01	ks_quality_p_value=0.932715	major_base=C	major_cov=35/65	major_frequency=5.464e-01	minor_base=G	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.536e-01	polymorphism_score=292.7	prediction=polymorphism	ref_cov=35/65	total_cov=86/98
RA	75	.	NC_000913	581404	0	C	G	bias_e_value=17317	bias_p_value=0.00373079	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.9	fisher_strand_p_value=0.0010484	frequency=4.432e-01	ks_quality_p_value=0.406158	major_base=C	major_cov=36/67	major_frequency=5.568e-01	minor_base=G	minor_cov=49/33	new_cov=49/33	polymorphism_frequency=4.432e-01	polymorphism_score=289.8	prediction=polymorphism	ref_cov=36/67	total_cov=86/100
RA	76	.	NC_000913	581407	0	G	T	bias_e_value=57078	bias_p_value=0.0122969	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.5	fisher_strand_p_value=0.00180068	frequency=4.541e-01	ks_quality_p_value=0.922858	major_base=G	major_cov=36/65	major_frequency=5.459e-01	minor_base=T	minor_cov=50/34	new_cov=50/34	polymorphism_frequency=4.541e-01	polymorphism_score=259.4	prediction=polymorphism	ref_cov=36/65	total_cov=86/100
RA	77	.	NC_000913	581410	0	T	A	bias_e_value=60929.8	bias_p_value=0.0131268	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.2	fisher_strand_p_value=0.00179222	frequency=4.486e-01	ks_quality_p_value=1	major_base=T	major_cov=37/65	major_frequency=5.514e-01	minor_base=A	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.486e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=37/65	total_cov=87/99
RA	78	.	NC_000913	581412	0	G	T	bias_e_value=34830.4	bias_p_value=0.00750388	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.7	fisher_strand_p_value=0.00114942	frequency=4.462e-01	ks_quality_p_value=0.819356	major_base=G	major_cov=37/66	major_frequency=5.538e-01	minor_base=T	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.462e-01	polymorphism_score=259.8	prediction=polymorphism	ref_cov=37/66	total_cov=87/99
RA	79	.	NC_000913	581413	0	C	T	bias_e_value=13667.8	bias_p_value=0.0029446	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.5	fisher_strand_p_value=0.000365399	frequency=4.511e-01	ks_quality_p_value=0.892611	major_base=C	major_cov=34/67	major_frequency=5.489e-01	minor_base=T	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.511e-01	polymorphism_score=286.4	prediction=polymorphism	ref_cov=34/67	total_cov=84/100
RA	80	.	NC_000913	581416	0	A	G	bias_e_value=13551.1	bias_p_value=0.00291945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.4	fisher_strand_p_value=0.000323027	frequency=4.536e-01	ks_quality_p_value=1	major_base=A	major_cov=33/67	major_frequency=5.464e-01	minor_base=G	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.536e-01	polymorphism_score=259.0	prediction=polymorphism	ref_cov=33/67	total_cov=83/100
RA	81	.	NC_000913	581421	0	T	A	bias_e_value=98515.4	bias_p_value=0.0212242	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.4	fisher_strand_p_value=0.00324504	frequency=4.415e-01	ks_quality_p_value=0.966922	major_base=T	major_cov=40/65	major_frequency=5.585e-01	minor_base=A	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.415e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=40/65	total_cov=90/98
RA	82	.	NC_000913	581423	0	A	C	bias_e_value=52176.8	bias_p_value=0.011241	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.4	fisher_strand_p_value=0.00200808	frequency=4.486e-01	ks_quality_p_value=0.74603	major_base=A	major_cov=38/64	major_frequency=5.514e-01	minor_base=C	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.486e-01	polymorphism_score=279.6	prediction=polymorphism	ref_cov=38/64	total_cov=88/97
RA	83	.	NC_000913	581425	0	G	A	bias_e_value=44889.4	bias_p_value=0.00967099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=0.00296194	frequency=4.511e-01	ks_quality_p_value=0.425318	major_base=G	major_cov=38/63	major_frequency=5.489e-01	minor_base=A	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.511e-01	polymorphism_score=282.9	prediction=polymorphism	ref_cov=38/63	total_cov=88/96
RA	84	.	NC_000913	581428	0	G	T	bias_e_value=172935	bias_p_value=0.0372573	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.8	fisher_strand_p_value=0.0253167	frequency=4.560e-01	ks_quality_p_value=0.241339	major_base=G	major_cov=41/58	major_frequency=5.440e-01	minor_base=T	minor_cov=49/34	new_cov=49/34	polymorphism_frequency=4.560e-01	polymorphism_score=260.8	prediction=polymorphism	ref_cov=41/58	total_cov=90/92
RA	85	.	NC_000913	581434	0	A	G	bias_e_value=404734	bias_p_value=0.0871962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.8	fisher_strand_p_value=0.0180353	frequency=4.560e-01	ks_quality_p_value=0.955261	major_base=A	major_cov=42/57	major_frequency=5.440e-01	minor_base=G	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.560e-01	polymorphism_score=259.1	prediction=polymorphism	ref_cov=42/57	total_cov=92/90
RA	86	.	NC_000913	581437	0	G	A	bias_e_value=303034	bias_p_value=0.0652858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.0	fisher_strand_p_value=0.0120479	frequency=4.615e-01	ks_quality_p_value=1	major_base=G	major_cov=41/57	major_frequency=5.385e-01	minor_base=A	minor_cov=51/33	new_cov=51/33	polymorphism_frequency=4.615e-01	polymorphism_score=279.8	prediction=polymorphism	ref_cov=41/57	total_cov=92/90
RA	87	.	NC_000913	581440	0	C	G	bias_e_value=530972	bias_p_value=0.114393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=0.0242363	frequency=4.581e-01	ks_quality_p_value=1	major_base=C	major_cov=42/55	major_frequency=5.419e-01	minor_base=G	minor_cov=50/32	new_cov=50/32	polymorphism_frequency=4.581e-01	polymorphism_score=284.1	prediction=polymorphism	ref_cov=42/55	total_cov=92/88
RA	88	.	NC_000913	581443	0	C	G	bias_e_value=139484	bias_p_value=0.0300505	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=0.0170208	frequency=4.663e-01	ks_quality_p_value=0.277861	major_base=C	major_cov=40/55	major_frequency=5.337e-01	minor_base=G	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.663e-01	polymorphism_score=295.8	prediction=polymorphism	ref_cov=40/55	total_cov=92/88
RA	89	.	NC_000913	581455	0	G	A	bias_e_value=699362	bias_p_value=0.150671	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.8	fisher_strand_p_value=0.0526225	frequency=4.611e-01	ks_quality_p_value=0.655705	major_base=G	major_cov=44/53	major_frequency=5.389e-01	minor_base=A	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.611e-01	polymorphism_score=284.1	prediction=polymorphism	ref_cov=44/53	total_cov=94/86
RA	90	.	NC_000913	581458	0	T	C	bias_e_value=629348	bias_p_value=0.135587	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.5	fisher_strand_p_value=0.0526225	frequency=4.611e-01	ks_quality_p_value=0.572215	major_base=T	major_cov=44/53	major_frequency=5.389e-01	minor_base=C	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.611e-01	polymorphism_score=268.0	prediction=polymorphism	ref_cov=44/53	total_cov=94/86
RA	91	.	NC_000913	581460	0	C	A	bias_e_value=956393	bias_p_value=0.206046	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.1	fisher_strand_p_value=0.0521039	frequency=4.586e-01	ks_quality_p_value=1	major_base=C	major_cov=44/54	major_frequency=5.414e-01	minor_base=A	minor_cov=50/33	new_cov=50/33	polymorphism_frequency=4.586e-01	polymorphism_score=229.6	prediction=polymorphism	ref_cov=44/54	total_cov=94/88
RA	92	.	NC_000913	581476	0	G	C	bias_e_value=1788500	bias_p_value=0.385316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.7	fisher_strand_p_value=0.177154	frequency=4.444e-01	ks_quality_p_value=0.706648	major_base=G	major_cov=48/52	major_frequency=5.556e-01	minor_base=C	minor_cov=47/33	new_cov=47/33	polymorphism_frequency=4.444e-01	polymorphism_score=269.3	prediction=polymorphism	ref_cov=48/52	total_cov=97/88
RA	93	.	NC_000913	581482	0	A	G	bias_e_value=1579660	bias_p_value=0.340323	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.7	fisher_strand_p_value=0.104413	frequency=4.481e-01	ks_quality_p_value=1	major_base=A	major_cov=48/53	major_frequency=5.519e-01	minor_base=G	minor_cov=49/33	new_cov=49/33	polymorphism_frequency=4.481e-01	polymorphism_score=246.3	prediction=polymorphism	ref_cov=48/53	total_cov=97/86
RA	94	.	NC_000913	581485	0	C	G	bias_e_value=1212470	bias_p_value=0.261215	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.8	fisher_strand_p_value=0.0733914	frequency=4.451e-01	ks_quality_p_value=0.979883	major_base=C	major_cov=47/54	major_frequency=5.549e-01	minor_base=G	minor_cov=49/32	new_cov=49/32	polymorphism_frequency=4.451e-01	polymorphism_score=282.1	prediction=polymorphism	ref_cov=47/54	total_cov=96/86
RA	95	.	NC_000913	581488	0	A	C	bias_e_value=3037930	bias_p_value=0.654494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.2	fisher_strand_p_value=0.294479	frequency=4.185e-01	ks_quality_p_value=1	major_base=A	major_cov=53/54	major_frequency=5.815e-01	minor_base=C	minor_cov=45/32	new_cov=45/32	polymorphism_frequency=4.185e-01	polymorphism_score=228.6	prediction=polymorphism	ref_cov=53/54	total_cov=98/86
RA	96	.	NC_000913	581512	0	A	G	bias_e_value=4602350	bias_p_value=0.991534	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.7	fisher_strand_p_value=0.879578	frequency=4.144e-01	ks_quality_p_value=0.992212	major_base=A	major_cov=59/47	major_frequency=5.856e-01	minor_base=G	minor_cov=43/32	new_cov=43/32	polymorphism_frequency=4.144e-01	polymorphism_score=233.8	prediction=polymorphism	ref_cov=59/47	total_cov=103/79
RA	97	.	NC_000913	581513	0	C	T	bias_e_value=4639040	bias_p_value=0.999436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.6	fisher_strand_p_value=1	frequency=4.088e-01	ks_quality_p_value=0.966609	major_base=C	major_cov=60/47	major_frequency=5.912e-01	minor_base=T	minor_cov=42/32	new_cov=42/32	polymorphism_frequency=4.088e-01	polymorphism_score=249.7	prediction=polymorphism	ref_cov=60/47	total_cov=102/79
RA	98	.	NC_000913	581518	0	C	G	bias_e_value=4640580	bias_p_value=0.999769	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.3	fisher_strand_p_value=1	frequency=4.213e-01	ks_quality_p_value=0.978584	major_base=C	major_cov=60/43	major_frequency=5.787e-01	minor_base=G	minor_cov=43/32	new_cov=43/32	polymorphism_frequency=4.213e-01	polymorphism_score=259.7	prediction=polymorphism	ref_cov=60/43	total_cov=103/75
RA	99	.	NC_000913	581524	0	G	A	bias_e_value=4604550	bias_p_value=0.992007	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.1	fisher_strand_p_value=0.876254	frequency=4.057e-01	ks_quality_p_value=1	major_base=G	major_cov=61/43	major_frequency=5.943e-01	minor_base=A	minor_cov=40/31	new_cov=40/31	polymorphism_frequency=4.057e-01	polymorphism_score=220.6	prediction=polymorphism	ref_cov=61/43	total_cov=101/74
RA	100	.	NC_000913	581527	0	G	C	bias_e_value=4603460	bias_p_value=0.991772	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.2	fisher_strand_p_value=0.876957	frequency=4.034e-01	ks_quality_p_value=0.997186	major_base=G	major_cov=61/44	major_frequency=5.966e-01	minor_base=C	minor_cov=40/31	new_cov=40/31	polymorphism_frequency=4.034e-01	polymorphism_score=253.5	prediction=polymorphism	ref_cov=61/44	total_cov=101/75
RA	101	.	NC_000913	581530	0	C	G	bias_e_value=4331030	bias_p_value=0.93308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.2	fisher_strand_p_value=0.876957	frequency=4.034e-01	ks_quality_p_value=0.749435	major_base=C	major_cov=61/44	major_frequency=5.966e-01	minor_base=G	minor_cov=40/31	new_cov=40/31	polymorphism_frequency=4.034e-01	polymorphism_score=242.2	prediction=polymorphism	ref_cov=61/44	total_cov=101/75
RA	102	.	NC_000913	581548	0	C	T	bias_e_value=4461280	bias_p_value=0.96114	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.1	fisher_strand_p_value=0.739014	frequency=3.373e-01	ks_quality_p_value=0.993885	major_base=C	major_cov=68/42	major_frequency=6.627e-01	minor_base=T	minor_cov=33/23	new_cov=33/23	polymorphism_frequency=3.373e-01	polymorphism_score=177.5	prediction=polymorphism	ref_cov=68/42	total_cov=101/65
RA	103	.	NC_000913	581550	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.7	fisher_strand_p_value=1	frequency=3.314e-01	ks_quality_p_value=1	major_base=G	major_cov=68/45	major_frequency=6.686e-01	minor_base=A	minor_cov=33/23	new_cov=33/23	polymorphism_frequency=3.314e-01	polymorphism_score=172.9	prediction=polymorphism	ref_cov=68/45	total_cov=101/68
RA	104	.	NC_000913	581554	0	C	T	bias_e_value=4620240	bias_p_value=0.995386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.1	fisher_strand_p_value=1	frequency=3.164e-01	ks_quality_p_value=0.905489	major_base=C	major_cov=72/49	major_frequency=6.836e-01	minor_base=T	minor_cov=33/23	new_cov=33/23	polymorphism_frequency=3.164e-01	polymorphism_score=174.2	prediction=polymorphism	ref_cov=72/49	total_cov=105/72
RA	105	.	NC_000913	581560	0	C	A	bias_e_value=4596940	bias_p_value=0.990368	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.3	fisher_strand_p_value=0.864454	frequency=2.965e-01	ks_quality_p_value=1	major_base=C	major_cov=73/48	major_frequency=7.035e-01	minor_base=A	minor_cov=32/19	new_cov=32/19	polymorphism_frequency=2.965e-01	polymorphism_score=125.5	prediction=polymorphism	ref_cov=73/48	total_cov=105/67
RA	106	.	NC_000913	581569	0	G	C	bias_e_value=2537000	bias_p_value=0.546573	consensus_reject=FREQUENCY_CUTOFF	consensus_score=341.6	fisher_strand_p_value=0.244941	frequency=2.342e-01	ks_quality_p_value=0.880668	major_base=G	major_cov=75/46	major_frequency=7.658e-01	minor_base=C	minor_cov=27/10	new_cov=27/10	polymorphism_frequency=2.342e-01	polymorphism_score=125.0	prediction=polymorphism	ref_cov=75/46	total_cov=102/56
RA	107	.	NC_000913	581572	0	T	C	bias_e_value=3202940	bias_p_value=0.690042	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.2	fisher_strand_p_value=0.324791	frequency=2.372e-01	ks_quality_p_value=1	major_base=T	major_cov=75/44	major_frequency=7.628e-01	minor_base=C	minor_cov=27/10	new_cov=27/10	polymorphism_frequency=2.372e-01	polymorphism_score=88.4	prediction=polymorphism	ref_cov=75/44	total_cov=102/54
RA	108	.	NC_000913	581575	0	G	T	bias_e_value=3183190	bias_p_value=0.685788	consensus_reject=FREQUENCY_CUTOFF	consensus_score=329.5	fisher_strand_p_value=0.324751	frequency=2.403e-01	ks_quality_p_value=0.988534	major_base=G	major_cov=74/43	major_frequency=7.597e-01	minor_base=T	minor_cov=27/10	new_cov=27/10	polymorphism_frequency=2.403e-01	polymorphism_score=105.3	prediction=polymorphism	ref_cov=74/43	total_cov=102/53
RA	109	.	NC_000913	581578	0	G	T	bias_e_value=1905400	bias_p_value=0.410501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.2	fisher_strand_p_value=0.326778	frequency=2.387e-01	ks_quality_p_value=0.421057	major_base=G	major_cov=75/43	major_frequency=7.613e-01	minor_base=T	minor_cov=27/10	new_cov=27/10	polymorphism_frequency=2.387e-01	polymorphism_score=105.4	prediction=polymorphism	ref_cov=75/43	total_cov=102/53
RA	110	.	NC_000913	710830	0	G	T	bias_e_value=0.000434299	bias_p_value=9.35656e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.7	fisher_strand_p_value=3.41443e-12	frequency=2.838e-01	ks_quality_p_value=1	major_base=G	major_cov=59/47	major_frequency=7.162e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.838e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=59/47	total_cov=59/89
RA	111	.	NC_000913	736147	0	C	A	bias_e_value=1.006e-08	bias_p_value=2.16733e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=443.7	fisher_strand_p_value=5.64207e-17	frequency=2.582e-01	ks_quality_p_value=1	major_base=C	major_cov=67/91	major_frequency=7.418e-01	minor_base=A	minor_cov=55/0	new_cov=55/0	polymorphism_frequency=2.582e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=67/91	total_cov=122/91
RA	112	.	NC_000913	847955	0	G	A	bias_e_value=3.7032e-07	bias_p_value=7.9782e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=396.9	fisher_strand_p_value=2.29877e-15	frequency=2.161e-01	ks_quality_p_value=1	major_base=G	major_cov=96/60	major_frequency=7.839e-01	minor_base=A	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.161e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=96/60	total_cov=96/103
RA	113	.	NC_000913	848028	0	G	T	bias_e_value=1.41796e-06	bias_p_value=3.05487e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=471.7	fisher_strand_p_value=9.16741e-15	frequency=2.143e-01	ks_quality_p_value=1	major_base=G	major_cov=96/69	major_frequency=7.857e-01	minor_base=T	minor_cov=0/45	new_cov=0/45	polymorphism_frequency=2.143e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=96/69	total_cov=96/114
RA	114	.	NC_000913	952453	0	G	T	bias_e_value=0.0251142	bias_p_value=5.41063e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.7	fisher_strand_p_value=2.33437e-10	frequency=3.191e-01	ks_quality_p_value=1	major_base=G	major_cov=46/50	major_frequency=6.809e-01	minor_base=T	minor_cov=0/45	new_cov=0/45	polymorphism_frequency=3.191e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=46/50	total_cov=46/95
RA	115	.	NC_000913	967676	0	G	T	bias_e_value=0.00884007	bias_p_value=1.90451e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=342.1	fisher_strand_p_value=7.84775e-11	frequency=2.229e-01	ks_quality_p_value=1	major_base=G	major_cov=69/60	major_frequency=7.771e-01	minor_base=T	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.229e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=69/60	total_cov=69/97
RA	116	.	NC_000913	1001094	0	G	T	bias_e_value=15.4295	bias_p_value=3.32415e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.4	fisher_strand_p_value=2.0254e-07	frequency=2.582e-01	ks_quality_p_value=1	major_base=G	major_cov=57/78	major_frequency=7.418e-01	minor_base=T	minor_cov=2/45	new_cov=2/45	polymorphism_frequency=2.582e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=57/78	total_cov=59/123
RA	117	.	NC_000913	1097118	0	C	A	bias_e_value=2458570	bias_p_value=0.529677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.7	fisher_strand_p_value=0.210371	frequency=2.708e-01	ks_quality_p_value=0.973882	major_base=C	major_cov=14/21	major_frequency=7.292e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.708e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=14/21	total_cov=22/26
RA	118	.	NC_000913	1097158	0	C	T	bias_e_value=3821640	bias_p_value=0.823337	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.3	fisher_strand_p_value=0.49077	frequency=2.444e-01	ks_quality_p_value=0.953578	major_base=C	major_cov=16/18	major_frequency=7.556e-01	minor_base=T	minor_cov=7/4	new_cov=7/4	polymorphism_frequency=2.444e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=16/18	total_cov=23/22
RA	119	.	NC_000913	1197261	0	G	T	bias_e_value=0.00537347	bias_p_value=1.15766e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=405.0	fisher_strand_p_value=4.67041e-11	frequency=2.067e-01	ks_quality_p_value=1	major_base=G	major_cov=76/66	major_frequency=7.933e-01	minor_base=T	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.067e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=76/66	total_cov=76/103
RA	120	.	NC_000913	1260313	0	G	T	bias_e_value=0.303524	bias_p_value=6.53914e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.9	fisher_strand_p_value=3.1795e-09	frequency=2.523e-01	ks_quality_p_value=1	major_base=G	major_cov=48/32	major_frequency=7.477e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.523e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=48/32	total_cov=48/59
RA	121	.	NC_000913	1286870	0	C	A	bias_e_value=190834	bias_p_value=0.0411135	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.7	fisher_strand_p_value=0.00687539	frequency=2.422e-01	ks_quality_p_value=1	major_base=C	major_cov=44/53	major_frequency=7.578e-01	minor_base=A	minor_cov=23/8	new_cov=23/8	polymorphism_frequency=2.422e-01	polymorphism_score=35.2	prediction=polymorphism	ref_cov=44/53	total_cov=67/61
RA	122	.	NC_000913	1335034	0	G	T	bias_e_value=1.31215e-11	bias_p_value=2.8269e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=519.9	fisher_strand_p_value=6.25159e-20	frequency=2.392e-01	ks_quality_p_value=1	major_base=G	major_cov=115/79	major_frequency=7.608e-01	minor_base=T	minor_cov=0/61	new_cov=0/61	polymorphism_frequency=2.392e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=115/79	total_cov=115/140
RA	123	.	NC_000913	1372018	0	C	A	bias_e_value=0.0185819	bias_p_value=4.0033e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=319.5	fisher_strand_p_value=1.70405e-10	frequency=2.117e-01	ks_quality_p_value=1	major_base=C	major_cov=42/66	major_frequency=7.883e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.117e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=42/66	total_cov=71/66
RA	124	.	NC_000913	1464694	0	G	T	bias_e_value=0.0321262	bias_p_value=6.92129e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.1	fisher_strand_p_value=3.01967e-10	frequency=2.463e-01	ks_quality_p_value=1	major_base=G	major_cov=57/44	major_frequency=7.537e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.463e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=57/44	total_cov=57/77
RA	125	.	NC_000913	1466201	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.8	fisher_strand_p_value=1	frequency=2.424e-01	ks_quality_p_value=1	major_base=T	major_cov=43/57	major_frequency=7.576e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=2.424e-01	polymorphism_score=66.8	prediction=polymorphism	ref_cov=43/57	total_cov=57/75
RA	126	.	NC_000913	1466210	0	G	A	bias_e_value=1292290	bias_p_value=0.278411	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.4	fisher_strand_p_value=0.0785613	frequency=2.984e-01	ks_quality_p_value=1	major_base=G	major_cov=34/53	major_frequency=7.016e-01	minor_base=A	minor_cov=21/16	new_cov=21/16	polymorphism_frequency=2.984e-01	polymorphism_score=83.5	prediction=polymorphism	ref_cov=34/53	total_cov=55/69
RA	127	.	NC_000913	1502770	0	T	C	bias_e_value=0.000293617	bias_p_value=6.3257e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=370.3	fisher_strand_p_value=2.27468e-12	frequency=2.081e-01	ks_quality_p_value=1	major_base=T	major_cov=82/55	major_frequency=7.919e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.081e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=82/55	total_cov=82/91
RA	128	.	NC_000913	1611507	0	G	T	bias_e_value=67.997	bias_p_value=1.46493e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.3	fisher_strand_p_value=9.87975e-07	frequency=2.761e-01	ks_quality_p_value=1	major_base=G	major_cov=42/55	major_frequency=7.239e-01	minor_base=T	minor_cov=1/36	new_cov=1/36	polymorphism_frequency=2.761e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=42/55	total_cov=43/91
RA	129	.	NC_000913	1631903	0	G	T	bias_e_value=0.0476623	bias_p_value=1.02684e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.2	fisher_strand_p_value=4.56209e-10	frequency=2.520e-01	ks_quality_p_value=1	major_base=G	major_cov=55/40	major_frequency=7.480e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.520e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=55/40	total_cov=55/72
RA	130	.	NC_000913	1812509	0	G	T	bias_e_value=7.11614e-06	bias_p_value=1.5331e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.1	fisher_strand_p_value=4.84259e-14	frequency=2.819e-01	ks_quality_p_value=1	major_base=G	major_cov=66/41	major_frequency=7.181e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.819e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=66/41	total_cov=66/83
RA	131	.	NC_000913	1823018	0	C	A	bias_e_value=7.9857	bias_p_value=1.72044e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.5	fisher_strand_p_value=1.00536e-07	frequency=2.895e-01	ks_quality_p_value=1	major_base=C	major_cov=43/38	major_frequency=7.105e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.895e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=43/38	total_cov=76/38
RA	132	.	NC_000913	1902806	0	C	A	bias_e_value=0.00420935	bias_p_value=9.06865e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=319.5	fisher_strand_p_value=3.62144e-11	frequency=2.515e-01	ks_quality_p_value=1	major_base=C	major_cov=63/65	major_frequency=7.485e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=2.515e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=63/65	total_cov=106/65
RA	133	.	NC_000913	1951203	0	A	T	bias_e_value=3693040	bias_p_value=0.79563	consensus_reject=FREQUENCY_CUTOFF	consensus_score=409.3	fisher_strand_p_value=0.433241	frequency=2.089e-01	ks_quality_p_value=1	major_base=A	major_cov=61/64	major_frequency=7.911e-01	minor_base=T	minor_cov=13/20	new_cov=13/20	polymorphism_frequency=2.089e-01	polymorphism_score=119.0	prediction=polymorphism	ref_cov=61/64	total_cov=74/84
RA	134	.	NC_000913	1951320	0	G	A	bias_e_value=1922590	bias_p_value=0.414204	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.6	fisher_strand_p_value=0.153516	frequency=2.485e-01	ks_quality_p_value=0.908475	major_base=G	major_cov=72/55	major_frequency=7.515e-01	minor_base=A	minor_cov=18/24	new_cov=18/24	polymorphism_frequency=2.485e-01	polymorphism_score=125.3	prediction=polymorphism	ref_cov=72/55	total_cov=90/79
RA	135	.	NC_000913	1951332	0	T	C	bias_e_value=1174050	bias_p_value=0.252938	consensus_reject=FREQUENCY_CUTOFF	consensus_score=343.2	fisher_strand_p_value=0.075658	frequency=2.485e-01	ks_quality_p_value=0.909312	major_base=T	major_cov=75/52	major_frequency=7.515e-01	minor_base=C	minor_cov=18/24	new_cov=18/24	polymorphism_frequency=2.485e-01	polymorphism_score=115.6	prediction=polymorphism	ref_cov=75/52	total_cov=93/78
RA	136	.	NC_000913	1951335	0	C	T	bias_e_value=1629970	bias_p_value=0.351161	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.0	fisher_strand_p_value=0.109258	frequency=2.471e-01	ks_quality_p_value=1	major_base=C	major_cov=74/54	major_frequency=7.529e-01	minor_base=T	minor_cov=18/24	new_cov=18/24	polymorphism_frequency=2.471e-01	polymorphism_score=119.0	prediction=polymorphism	ref_cov=74/54	total_cov=92/78
RA	137	.	NC_000913	1951338	0	C	T	bias_e_value=402263	bias_p_value=0.0866637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.2	fisher_strand_p_value=0.150928	frequency=2.440e-01	ks_quality_p_value=0.113282	major_base=C	major_cov=73/54	major_frequency=7.560e-01	minor_base=T	minor_cov=18/23	new_cov=18/23	polymorphism_frequency=2.440e-01	polymorphism_score=124.5	prediction=polymorphism	ref_cov=73/54	total_cov=93/78
RA	138	.	NC_000913	1951386	0	C	T	bias_e_value=220034	bias_p_value=0.0474043	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.5	fisher_strand_p_value=0.0193782	frequency=2.384e-01	ks_quality_p_value=0.421165	major_base=C	major_cov=82/49	major_frequency=7.616e-01	minor_base=T	minor_cov=17/24	new_cov=17/24	polymorphism_frequency=2.384e-01	polymorphism_score=119.5	prediction=polymorphism	ref_cov=82/49	total_cov=100/73
RA	139	.	NC_000913	1951387	0	A	C	bias_e_value=629833	bias_p_value=0.135692	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.6	fisher_strand_p_value=0.0311061	frequency=2.471e-01	ks_quality_p_value=0.968979	major_base=A	major_cov=80/48	major_frequency=7.529e-01	minor_base=C	minor_cov=18/24	new_cov=18/24	polymorphism_frequency=2.471e-01	polymorphism_score=123.7	prediction=polymorphism	ref_cov=80/48	total_cov=99/72
RA	140	.	NC_000913	1951412	0	A	G	bias_e_value=640050	bias_p_value=0.137893	consensus_reject=FREQUENCY_CUTOFF	consensus_score=340.1	fisher_strand_p_value=0.0770022	frequency=2.386e-01	ks_quality_p_value=0.39962	major_base=A	major_cov=79/55	major_frequency=7.614e-01	minor_base=G	minor_cov=18/24	new_cov=18/24	polymorphism_frequency=2.386e-01	polymorphism_score=113.6	prediction=polymorphism	ref_cov=79/55	total_cov=98/79
RA	141	.	NC_000913	1951448	0	G	T	bias_e_value=1633220	bias_p_value=0.351862	consensus_reject=FREQUENCY_CUTOFF	consensus_score=405.6	fisher_strand_p_value=0.109575	frequency=2.330e-01	ks_quality_p_value=1	major_base=G	major_cov=79/56	major_frequency=7.670e-01	minor_base=T	minor_cov=18/23	new_cov=18/23	polymorphism_frequency=2.330e-01	polymorphism_score=98.0	prediction=polymorphism	ref_cov=79/56	total_cov=97/79
RA	142	.	NC_000913	2173363	0	C	.	consensus_score=581.8	frequency=1	major_base=.	major_cov=64/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/56
RA	143	.	NC_000913	2173364	0	C	.	consensus_score=581.8	frequency=1	major_base=.	major_cov=64/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/56
RA	144	.	NC_000913	2182407	0	G	T	bias_e_value=13.9142	bias_p_value=2.99767e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.9	fisher_strand_p_value=1.81431e-07	frequency=2.368e-01	ks_quality_p_value=1	major_base=G	major_cov=48/68	major_frequency=7.632e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.368e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=48/68	total_cov=48/104
RA	145	.	NC_000913	2244442	0	C	A	bias_e_value=4.28627e-07	bias_p_value=9.23436e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=341.3	fisher_strand_p_value=2.6723e-15	frequency=2.313e-01	ks_quality_p_value=1	major_base=C	major_cov=32/81	major_frequency=7.687e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.313e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=32/81	total_cov=66/81
RA	146	.	NC_000913	2288418	0	G	T	bias_e_value=1.69428e-10	bias_p_value=3.65017e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.3	fisher_strand_p_value=8.56827e-19	frequency=2.928e-01	ks_quality_p_value=1	major_base=G	major_cov=83/45	major_frequency=7.072e-01	minor_base=T	minor_cov=0/53	new_cov=0/53	polymorphism_frequency=2.928e-01	polymorphism_score=38.2	prediction=polymorphism	ref_cov=83/45	total_cov=83/98
RA	147	.	NC_000913	2466633	0	C	A	bias_e_value=3.36029e-05	bias_p_value=7.23942e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.0	fisher_strand_p_value=2.40877e-13	frequency=2.817e-01	ks_quality_p_value=1	major_base=C	major_cov=39/63	major_frequency=7.183e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.817e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=39/63	total_cov=79/63
RA	148	.	NC_000913	2477265	0	A	C	bias_e_value=5.35151e-07	bias_p_value=1.15293e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.1	fisher_strand_p_value=3.35865e-15	frequency=2.407e-01	ks_quality_p_value=1	major_base=A	major_cov=14/68	major_frequency=7.593e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.407e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=14/68	total_cov=40/68
RA	149	.	NC_000913	2678973	0	G	T	bias_e_value=3.20519	bias_p_value=6.90528e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.8	fisher_strand_p_value=3.81915e-08	frequency=2.138e-01	ks_quality_p_value=1	major_base=G	major_cov=55/59	major_frequency=7.862e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.138e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=55/59	total_cov=55/90
RA	150	.	NC_000913	2690434	0	G	T	bias_e_value=0.00492315	bias_p_value=1.06065e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.5	fisher_strand_p_value=4.26333e-11	frequency=2.353e-01	ks_quality_p_value=1	major_base=G	major_cov=63/41	major_frequency=7.647e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.353e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=63/41	total_cov=63/73
RA	151	.	NC_000913	2767443	0	C	A	bias_e_value=5.12278e-10	bias_p_value=1.10365e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.7	fisher_strand_p_value=2.66148e-18	frequency=2.804e-01	ks_quality_p_value=1	major_base=C	major_cov=10/67	major_frequency=7.196e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.804e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=10/67	total_cov=42/67
RA	152	.	NC_000913	2767444	0	C	A	bias_e_value=3.72666e-14	bias_p_value=8.02874e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.9	fisher_strand_p_value=1.56789e-22	frequency=3.241e-01	ks_quality_p_value=1	major_base=C	major_cov=6/67	major_frequency=6.759e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.241e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=6/67	total_cov=42/67
RA	153	.	NC_000913	2767445	0	C	A	bias_e_value=1.06621e-11	bias_p_value=2.29704e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.3	fisher_strand_p_value=5.0561e-20	frequency=3.028e-01	ks_quality_p_value=1	major_base=C	major_cov=9/67	major_frequency=6.972e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.028e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=9/67	total_cov=42/67
RA	154	.	NC_000913	2815937	0	G	T	bias_e_value=3.44591e-05	bias_p_value=7.42389e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=310.8	fisher_strand_p_value=2.47228e-13	frequency=2.704e-01	ks_quality_p_value=1	major_base=G	major_cov=67/49	major_frequency=7.296e-01	minor_base=T	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.704e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=67/49	total_cov=67/92
RA	155	.	NC_000913	2818324	0	G	A	bias_e_value=3324380	bias_p_value=0.716206	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.0	fisher_strand_p_value=0.348829	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=39/53	major_frequency=7.931e-01	minor_base=A	minor_cov=7/17	new_cov=7/17	polymorphism_frequency=2.069e-01	polymorphism_score=46.9	prediction=polymorphism	ref_cov=39/53	total_cov=46/70
RA	156	.	NC_000913	2913085	0	G	T	bias_e_value=2.85049e-07	bias_p_value=6.14112e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.0	fisher_strand_p_value=1.75582e-15	frequency=2.973e-01	ks_quality_p_value=1	major_base=G	major_cov=67/37	major_frequency=7.027e-01	minor_base=T	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=2.973e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=67/37	total_cov=67/81
RA	157	.	NC_000913	2990480	0	C	A	bias_e_value=0.167189	bias_p_value=3.60193e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.6	fisher_strand_p_value=1.6996e-09	frequency=3.254e-01	ks_quality_p_value=1	major_base=C	major_cov=44/41	major_frequency=6.746e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.254e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=44/41	total_cov=85/42
RA	158	.	NC_000913	3024914	0	C	A	bias_e_value=2.47106e-09	bias_p_value=5.32366e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.6	fisher_strand_p_value=1.33578e-17	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=27/77	major_frequency=7.273e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.727e-01	polymorphism_score=26.0	prediction=polymorphism	ref_cov=27/77	total_cov=66/77
RA	159	.	NC_000913	3032307	0	C	T	bias_e_value=6.14633e-05	bias_p_value=1.32417e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.7	fisher_strand_p_value=4.49944e-13	frequency=3.113e-01	ks_quality_p_value=1	major_base=C	major_cov=22/51	major_frequency=6.887e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.113e-01	polymorphism_score=40.4	prediction=polymorphism	ref_cov=22/51	total_cov=56/51
RA	160	.	NC_000913	3054886	0	G	T	bias_e_value=0.00310365	bias_p_value=6.68652e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.1	fisher_strand_p_value=2.63676e-11	frequency=2.424e-01	ks_quality_p_value=1	major_base=G	major_cov=38/62	major_frequency=7.576e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.424e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=38/62	total_cov=70/62
RA	161	.	NC_000913	3054894	0	G	T	bias_e_value=2270.97	bias_p_value=0.00048926	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.3	fisher_strand_p_value=4.43871e-05	frequency=2.250e-01	ks_quality_p_value=1	major_base=G	major_cov=33/60	major_frequency=7.750e-01	minor_base=T	minor_cov=22/5	new_cov=22/5	polymorphism_frequency=2.250e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=33/60	total_cov=56/65
RA	162	.	NC_000913	3109216	0	G	T	bias_e_value=0.554063	bias_p_value=1.19368e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.8	fisher_strand_p_value=5.98831e-09	frequency=2.705e-01	ks_quality_p_value=1	major_base=G	major_cov=47/42	major_frequency=7.295e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.705e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=47/42	total_cov=47/75
RA	163	.	NC_000913	3149077	0	G	T	bias_e_value=6.3037e-08	bias_p_value=1.35807e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=395.5	fisher_strand_p_value=3.71788e-16	frequency=2.281e-01	ks_quality_p_value=1	major_base=G	major_cov=90/42	major_frequency=7.719e-01	minor_base=T	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=2.281e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=90/42	total_cov=90/81
RA	164	.	NC_000913	3191376	0	G	T	bias_e_value=2.22413e-06	bias_p_value=4.79167e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=413.1	fisher_strand_p_value=1.45826e-14	frequency=2.438e-01	ks_quality_p_value=1	major_base=G	major_cov=84/68	major_frequency=7.562e-01	minor_base=T	minor_cov=0/49	new_cov=0/49	polymorphism_frequency=2.438e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=84/68	total_cov=84/117
RA	165	.	NC_000913	3226224	0	G	T	bias_e_value=2.27023e-06	bias_p_value=4.891e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.5	fisher_strand_p_value=1.48944e-14	frequency=3.136e-01	ks_quality_p_value=1	major_base=G	major_cov=64/52	major_frequency=6.864e-01	minor_base=T	minor_cov=0/53	new_cov=0/53	polymorphism_frequency=3.136e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=64/52	total_cov=65/105
RA	166	.	NC_000913	3291800	0	C	A	bias_e_value=1.55601e-05	bias_p_value=3.35228e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.2	fisher_strand_p_value=1.08662e-13	frequency=2.635e-01	ks_quality_p_value=1	major_base=C	major_cov=52/71	major_frequency=7.365e-01	minor_base=A	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=2.635e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=52/71	total_cov=96/72
RA	167	.	NC_000913	3400539	0	G	A	bias_e_value=4.15116	bias_p_value=8.94327e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.1	fisher_strand_p_value=5.0224e-08	frequency=2.124e-01	ks_quality_p_value=1	major_base=G	major_cov=51/38	major_frequency=7.876e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.124e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=51/38	total_cov=51/62
RA	168	.	NC_000913	3557446	0	C	A	bias_e_value=0.00063687	bias_p_value=1.37208e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.2	fisher_strand_p_value=5.08072e-12	frequency=2.321e-01	ks_quality_p_value=1	major_base=C	major_cov=57/72	major_frequency=7.679e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.321e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=57/72	total_cov=96/72
RA	169	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=545.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99851	major_base=G	major_cov=72/74	major_frequency=9.932e-01	minor_base=.	minor_cov=0/1	new_cov=72/74	polymorphism_frequency=9.932e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=72/75
RA	170	.	NC_000913	3669715	0	G	T	bias_e_value=2.89487e-05	bias_p_value=6.23672e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.7	fisher_strand_p_value=2.06454e-13	frequency=3.007e-01	ks_quality_p_value=1	major_base=G	major_cov=61/46	major_frequency=6.993e-01	minor_base=T	minor_cov=0/46	new_cov=0/46	polymorphism_frequency=3.007e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=61/46	total_cov=61/92
RA	171	.	NC_000913	3741871	0	G	T	bias_e_value=9.42223e-07	bias_p_value=2.02993e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.7	fisher_strand_p_value=6.01561e-15	frequency=3.169e-01	ks_quality_p_value=1	major_base=G	major_cov=61/36	major_frequency=6.831e-01	minor_base=T	minor_cov=0/45	new_cov=0/45	polymorphism_frequency=3.169e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=61/36	total_cov=61/81
RA	172	.	NC_000913	3843750	0	C	A	bias_e_value=0.0277537	bias_p_value=5.97928e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.8	fisher_strand_p_value=2.59139e-10	frequency=2.418e-01	ks_quality_p_value=1	major_base=C	major_cov=75/63	major_frequency=7.582e-01	minor_base=A	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=2.418e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=75/63	total_cov=119/64
RA	173	.	NC_000913	3896780	0	C	A	bias_e_value=2.20105e-07	bias_p_value=4.74196e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=436.3	fisher_strand_p_value=1.34554e-15	frequency=2.176e-01	ks_quality_p_value=1	major_base=C	major_cov=49/102	major_frequency=7.824e-01	minor_base=A	minor_cov=41/1	new_cov=41/1	polymorphism_frequency=2.176e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=49/102	total_cov=90/103
RA	174	.	NC_000913	3911533	0	C	A	bias_e_value=9.26055e-10	bias_p_value=1.9951e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.9	fisher_strand_p_value=4.88266e-18	frequency=3.471e-01	ks_quality_p_value=1	major_base=C	major_cov=43/68	major_frequency=6.529e-01	minor_base=A	minor_cov=59/0	new_cov=59/0	polymorphism_frequency=3.471e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=43/68	total_cov=102/69
RA	175	.	NC_000913	3923539	0	C	A	bias_e_value=28.6866	bias_p_value=6.18025e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.0	fisher_strand_p_value=3.92371e-07	frequency=2.764e-01	ks_quality_p_value=1	major_base=C	major_cov=51/38	major_frequency=7.236e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.764e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=51/38	total_cov=85/38
RA	176	.	NC_000913	4096422	0	C	A	bias_e_value=3.76677e-05	bias_p_value=8.11514e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.1	fisher_strand_p_value=2.7108e-13	frequency=2.635e-01	ks_quality_p_value=1	major_base=C	major_cov=42/67	major_frequency=7.365e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.635e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=42/67	total_cov=81/67
RA	177	.	NC_000913	4175626	0	C	A	bias_e_value=0.019144	bias_p_value=4.1244e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.1	fisher_strand_p_value=1.75793e-10	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=59/67	major_frequency=7.778e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.222e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=59/67	total_cov=95/67
RA	178	.	NC_000913	4261040	0	C	A	bias_e_value=7.49686e-09	bias_p_value=1.61513e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=458.2	fisher_strand_p_value=4.17177e-17	frequency=2.304e-01	ks_quality_p_value=1	major_base=C	major_cov=58/99	major_frequency=7.696e-01	minor_base=A	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=2.304e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=58/99	total_cov=105/99
RA	179	.	NC_000913	4296268	0	T	C	bias_e_value=2462220	bias_p_value=0.530462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.2	fisher_strand_p_value=0.205372	frequency=2.653e-01	ks_quality_p_value=1	major_base=T	major_cov=20/16	major_frequency=7.347e-01	minor_base=C	minor_cov=10/3	new_cov=10/3	polymorphism_frequency=2.653e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=20/16	total_cov=30/19
RA	180	.	NC_000913	4296380	1	.	C	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=331.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998301	major_base=C	major_cov=55/41	major_frequency=9.796e-01	minor_base=T	minor_cov=1/1	new_cov=55/41	polymorphism_frequency=9.796e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/0	total_cov=58/42
RA	181	.	NC_000913	4296380	2	.	G	bias_e_value=3737830	bias_p_value=0.805281	consensus_score=329.1	fisher_strand_p_value=0.507879	frequency=1	ks_quality_p_value=0.876126	major_base=G	major_cov=56/42	major_frequency=9.800e-01	minor_base=.	minor_cov=2/0	new_cov=56/42	polymorphism_frequency=9.800e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=2/0	total_cov=58/42
RA	182	.	NC_000913	4360965	0	C	A	bias_e_value=5.51556e-08	bias_p_value=1.18827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=380.4	fisher_strand_p_value=3.24085e-16	frequency=2.308e-01	ks_quality_p_value=1	major_base=C	major_cov=41/89	major_frequency=7.692e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.308e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=41/89	total_cov=80/90
RA	183	.	NC_000913	4364218	0	G	T	bias_e_value=287.556	bias_p_value=6.19512e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.0	fisher_strand_p_value=4.66674e-06	frequency=2.674e-01	ks_quality_p_value=1	major_base=G	major_cov=36/27	major_frequency=7.326e-01	minor_base=T	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.674e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=36/27	total_cov=37/49
RA	184	.	NC_000913	4416241	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=574.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=98/60	major_frequency=9.937e-01	minor_base=A	minor_cov=1/0	new_cov=98/60	polymorphism_frequency=9.937e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=99/60
RA	185	.	NC_000913	4427822	0	C	A	bias_e_value=1.04041e-08	bias_p_value=2.24147e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.8	fisher_strand_p_value=5.84033e-17	frequency=3.048e-01	ks_quality_p_value=1	major_base=C	major_cov=54/76	major_frequency=6.952e-01	minor_base=A	minor_cov=57/0	new_cov=57/0	polymorphism_frequency=3.048e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=54/76	total_cov=111/76
RA	186	.	NC_000913	4540411	0	C	A	bias_e_value=1.46058e-13	bias_p_value=3.14668e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=494.1	fisher_strand_p_value=6.31691e-22	frequency=2.771e-01	ks_quality_p_value=1	major_base=C	major_cov=72/108	major_frequency=7.229e-01	minor_base=A	minor_cov=69/0	new_cov=69/0	polymorphism_frequency=2.771e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=72/108	total_cov=141/109
RA	187	.	NC_000913	4618146	0	G	T	bias_e_value=0.437939	bias_p_value=9.43499e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.1	fisher_strand_p_value=4.67518e-09	frequency=2.476e-01	ks_quality_p_value=1	major_base=G	major_cov=48/31	major_frequency=7.524e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.476e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=48/31	total_cov=48/57
MC	188	.	NC_000913	257908	258683	768	0	left_inside_cov=1	left_outside_cov=156	right_inside_cov=3	right_outside_cov=158
MC	189	.	NC_000913	354596	354689	0	0	left_inside_cov=0	left_outside_cov=127	right_inside_cov=46	right_outside_cov=48
MC	190	.	NC_000913	361657	362203	0	0	left_inside_cov=0	left_outside_cov=152	right_inside_cov=0	right_outside_cov=140
MC	191	.	NC_000913	1978503	1979278	767	0	left_inside_cov=0	left_outside_cov=182	right_inside_cov=7	right_outside_cov=185
MC	192	.	NC_000913	3423849	3424492	385	253	left_inside_cov=47	left_outside_cov=48	right_inside_cov=47	right_outside_cov=50
MC	193	.	NC_000913	3883285	3883552	0	0	left_inside_cov=47	left_outside_cov=48	right_inside_cov=47	right_outside_cov=50
MC	194	.	NC_000913	4415874	4416032	0	0	left_inside_cov=47	left_outside_cov=49	right_inside_cov=47	right_outside_cov=51
JC	195	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=96	coverage_plus=89	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=290	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=293	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=148	max_min_right_minus=148	max_min_right_plus=148	max_pos_hash_score=582	max_right=289	max_right_minus=287	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.47	new_junction_read_count=190	polymorphism_frequency=1.000e+00	pos_hash_score=90	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=185
JC	196	.	NC_000913	19796	1	NC_000913	361656	-1	0	alignment_overlap=1	coverage_minus=80	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__19796__1__NC_000913__361657__-1__1____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=293	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=149	max_min_right_minus=139	max_min_right_plus=149	max_pos_hash_score=580	max_right=285	max_right_minus=285	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=151	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=151
JC	197	.	NC_000913	70062	1	NC_000913	367520	-1	-22	alignment_overlap=-22	coverage_minus=38	coverage_plus=77	flanking_left=300	flanking_right=300	frequency=5.218e-01	junction_possible_overlap_registers=268	key=NC_000913__70062__1__NC_000913__367520__-1__-22__GCTAGCAGGAGGAATTCACCAT__300__300__0__0	max_left=276	max_left_minus=272	max_left_plus=276	max_min_left=137	max_min_left_minus=137	max_min_left_plus=130	max_min_right=138	max_min_right_minus=127	max_min_right_plus=138	max_pos_hash_score=538	max_right=265	max_right_minus=249	max_right_plus=265	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=118	polymorphism_frequency=5.218e-01	pos_hash_score=73	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=115	unique_read_sequence=GCTAGCAGGAGGAATTCACCAT
JC	198	.	NC_000913	71265	-1	NC_000913	354595	-1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=6.192e-01	junction_possible_overlap_registers=290	key=NC_000913__71265__-1__NC_000913__354595__-1__0____300__300__0__0	max_left=294	max_left_minus=289	max_left_plus=294	max_min_left=147	max_min_left_minus=147	max_min_left_plus=143	max_min_right=147	max_min_right_minus=147	max_min_right_plus=147	max_pos_hash_score=582	max_right=295	max_right_minus=295	max_right_plus=287	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.97	new_junction_read_count=126	polymorphism_frequency=6.192e-01	pos_hash_score=60	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=155	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	199	.	NC_000913	111436	-1	NC_000913	111553	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.188e-02	junction_possible_overlap_registers=282	key=NC_000913__111436__-1__NC_000913__111545__1__8____300__300__0__0	max_left=182	max_left_minus=152	max_left_plus=182	max_min_left=104	max_min_left_minus=83	max_min_left_plus=104	max_min_right=140	max_min_right_minus=140	max_min_right_plus=110	max_pos_hash_score=566	max_right=207	max_right_minus=207	max_right_plus=188	neg_log10_pos_hash_p_value=10.7	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=4.188e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=8	side_1_possible_overlap_registers=290	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=5
JC	200	.	NC_000913	140897	-1	NC_000913	141073	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.610e-02	junction_possible_overlap_registers=278	key=NC_000913__140897__-1__NC_000913__141061__1__12____300__300__0__0	max_left=265	max_left_minus=265	max_left_plus=138	max_min_left=138	max_min_left_minus=68	max_min_left_plus=138	max_min_right=22	max_min_right_minus=22	max_min_right_plus=0	max_pos_hash_score=558	max_right=220	max_right_minus=220	max_right_plus=150	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=3.610e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	201	.	NC_000913	215228	-1	NC_000913	215618	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.717e-02	junction_possible_overlap_registers=278	key=NC_000913__215228__-1__NC_000913__215606__1__12____300__300__0__0	max_left=182	max_left_minus=182	max_left_plus=182	max_min_left=104	max_min_left_minus=104	max_min_left_plus=85	max_min_right=5	max_min_right_minus=5	max_min_right_plus=5	max_pos_hash_score=558	max_right=202	max_right_minus=202	max_right_plus=202	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=4.717e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=136	side_2_redundant=0	total_non_overlap_reads=6
JC	202	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=64	coverage_plus=84	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=282	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=285	max_min_left=143	max_min_left_minus=91	max_min_left_plus=143	max_min_right=145	max_min_right_minus=145	max_min_right_plus=144	max_pos_hash_score=566	max_right=283	max_right_minus=283	max_right_plus=259	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.23	new_junction_read_count=155	polymorphism_frequency=9.969e-01	pos_hash_score=79	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=290	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=148
JC	203	.	NC_000913	258675	-1	NC_000913	362204	1	0	alignment_overlap=0	coverage_minus=79	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__258675__-1__NC_000913__362204__1__0____300__300__1__0	max_left=291	max_left_minus=278	max_left_plus=291	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=147	max_min_right_minus=147	max_min_right_plus=147	max_pos_hash_score=582	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.07	new_junction_read_count=139	polymorphism_frequency=1.000e+00	pos_hash_score=94	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=139
JC	204	.	NC_000913	274535	-1	NC_000913	274659	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=280	key=NC_000913__274535__-1__NC_000913__274649__1__10____300__300__1__1	max_left=143	max_left_minus=143	max_left_plus=77	max_min_left=143	max_min_left_minus=143	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=562	max_right=288	max_right_minus=147	max_right_plus=288	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=10	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	205	.	NC_000913	620510	-1	NC_000913	620973	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.365e-02	junction_possible_overlap_registers=279	key=NC_000913__620510__-1__NC_000913__620962__1__11____300__300__0__0	max_left=163	max_left_minus=163	max_left_plus=153	max_min_left=128	max_min_left_minus=0	max_min_left_plus=128	max_min_right=136	max_min_right_minus=126	max_min_right_plus=136	max_pos_hash_score=560	max_right=161	max_right_minus=126	max_right_plus=161	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=5.365e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=11	side_1_possible_overlap_registers=290	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=5
JC	206	.	NC_000913	628460	-1	NC_000913	628623	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.694e-02	junction_possible_overlap_registers=281	key=NC_000913__628460__-1__NC_000913__628614__1__9____300__300__0__0	max_left=256	max_left_minus=256	max_left_plus=198	max_min_left=105	max_min_left_minus=105	max_min_left_plus=46	max_min_right=93	max_min_right_minus=35	max_min_right_plus=93	max_pos_hash_score=564	max_right=251	max_right_minus=251	max_right_plus=245	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.694e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=9	side_1_possible_overlap_registers=290	side_1_read_count=139	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=5
JC	207	.	NC_000913	696506	-1	NC_000913	697057	1	-45	alignment_overlap=-45	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.144e-02	junction_possible_overlap_registers=245	key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0	max_left=158	max_left_minus=158	max_left_plus=89	max_min_left=75	max_min_left_minus=75	max_min_left_plus=62	max_min_right=78	max_min_right_minus=78	max_min_right_plus=43	max_pos_hash_score=492	max_right=130	max_right_minus=130	max_right_plus=130	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=6.144e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT
JC	208	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=8	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.376e-01	junction_possible_overlap_registers=212	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=164	max_left_minus=164	max_left_plus=150	max_min_left=20	max_min_left_minus=20	max_min_left_plus=6	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=426	max_right=136	max_right_minus=136	max_right_plus=121	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.13	new_junction_read_count=12	polymorphism_frequency=1.376e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=78	side_1_possible_overlap_registers=290	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=12
JC	209	.	NC_000913	722583	-1	NC_000913	723109	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.811e-02	junction_possible_overlap_registers=278	key=NC_000913__722583__-1__NC_000913__723097__1__12____300__300__0__0	max_left=76	max_left_minus=76	max_left_plus=76	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=69	max_pos_hash_score=558	max_right=69	max_right_minus=69	max_right_plus=69	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=4.811e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=4
JC	210	.	NC_000913	732239	-1	NC_000913	732420	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.459e-02	junction_possible_overlap_registers=278	key=NC_000913__732239__-1__NC_000913__732408__1__12____300__300__0__0	max_left=220	max_left_minus=220	max_left_plus=169	max_min_left=122	max_min_left_minus=122	max_min_left_plus=0	max_min_right=119	max_min_right_minus=68	max_min_right_plus=119	max_pos_hash_score=558	max_right=165	max_right_minus=165	max_right_plus=119	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=5.459e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=5
JC	211	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.065e-02	junction_possible_overlap_registers=278	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=190	max_left_minus=157	max_left_plus=190	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=131	max_min_right_minus=131	max_min_right_plus=97	max_pos_hash_score=558	max_right=131	max_right_minus=131	max_right_plus=97	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=8.065e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=4
JC	212	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=9.785e-02	junction_possible_overlap_registers=278	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=190	max_left_minus=157	max_left_plus=190	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=131	max_min_right_minus=131	max_min_right_plus=97	max_pos_hash_score=558	max_right=285	max_right_minus=131	max_right_plus=285	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=9.785e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=5
JC	213	.	NC_000913	732408	1	NC_000913	3621836	-1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.595e-02	junction_possible_overlap_registers=278	key=NC_000913__732408__1__NC_000913__3621848__-1__12____300__300__0__1	max_left=165	max_left_minus=119	max_left_plus=165	max_min_left=119	max_min_left_minus=119	max_min_left_plus=68	max_min_right=122	max_min_right_minus=0	max_min_right_plus=122	max_pos_hash_score=558	max_right=220	max_right_minus=169	max_right_plus=220	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=5.595e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	214	.	NC_000913	780918	-1	NC_000913	781321	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.980e-02	junction_possible_overlap_registers=272	key=NC_000913__780918__-1__NC_000913__781303__1__18____300__300__0__0	max_left=179	max_left_minus=179	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=51	max_min_right_plus=51	max_pos_hash_score=546	max_right=51	max_right_minus=51	max_right_plus=51	neg_log10_pos_hash_p_value=11.2	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.980e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=18	side_1_possible_overlap_registers=290	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=272	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=3
JC	215	.	NC_000913	781222	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=8	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.699e-01	junction_possible_overlap_registers=214	key=NC_000913__781222__-1__NC_000913__781369__1__76____300__300__0__0	max_left=153	max_left_minus=153	max_left_plus=94	max_min_left=94	max_min_left_minus=89	max_min_left_plus=94	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=430	max_right=193	max_right_minus=174	max_right_plus=193	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.18	new_junction_read_count=17	polymorphism_frequency=1.699e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=76	side_1_possible_overlap_registers=290	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=15
JC	216	.	NC_000913	781222	-1	NC_000913	2521485	1	0	alignment_overlap=18	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.903e-02	junction_possible_overlap_registers=272	key=NC_000913__781222__-1__NC_000913__2521467__1__18____300__300__0__0	max_left=152	max_left_minus=152	max_left_plus=152	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=31	max_min_right_minus=31	max_min_right_plus=4	max_pos_hash_score=546	max_right=31	max_right_minus=31	max_right_plus=4	neg_log10_pos_hash_p_value=10.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.903e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=18	side_1_possible_overlap_registers=290	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=272	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=4
JC	217	.	NC_000913	781369	1	NC_000913	2521128	-1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.013e-01	junction_possible_overlap_registers=289	key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__300__300__0__0	max_left=269	max_left_minus=269	max_left_plus=250	max_min_left=25	max_min_left_minus=25	max_min_left_plus=24	max_min_right=66	max_min_right_minus=30	max_min_right_plus=66	max_pos_hash_score=580	max_right=109	max_right_minus=109	max_right_plus=109	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.08	new_junction_read_count=10	polymorphism_frequency=1.013e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=G
JC	218	.	NC_000913	781543	-1	NC_000913	781809	1	0	alignment_overlap=24	coverage_minus=5	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=9.126e-02	junction_possible_overlap_registers=266	key=NC_000913__781543__-1__NC_000913__781785__1__24____300__300__0__0	max_left=242	max_left_minus=242	max_left_plus=178	max_min_left=126	max_min_left_minus=98	max_min_left_plus=126	max_min_right=98	max_min_right_minus=59	max_min_right_plus=98	max_pos_hash_score=534	max_right=233	max_right_minus=180	max_right_plus=233	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.09	new_junction_read_count=11	polymorphism_frequency=9.126e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=24	side_1_possible_overlap_registers=290	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=10
JC	219	.	NC_000913	1149703	-1	NC_000913	1150028	1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.736e-02	junction_possible_overlap_registers=277	key=NC_000913__1149703__-1__NC_000913__1150015__1__13____300__300__0__0	max_left=153	max_left_minus=153	max_left_plus=153	max_min_left=137	max_min_left_minus=106	max_min_left_plus=137	max_min_right=135	max_min_right_minus=135	max_min_right_plus=97	max_pos_hash_score=556	max_right=180	max_right_minus=180	max_right_plus=180	neg_log10_pos_hash_p_value=9.5	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=5.736e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=13	side_1_possible_overlap_registers=290	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=6
JC	220	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=19	coverage_plus=21	flanking_left=300	flanking_right=300	frequency=2.964e-01	junction_possible_overlap_registers=274	key=NC_000913__1207790__1__NC_000913__1209603__1__16____300__300__0__0	max_left=281	max_left_minus=276	max_left_plus=281	max_min_left=139	max_min_left_minus=133	max_min_left_plus=139	max_min_right=135	max_min_right_minus=85	max_min_right_plus=135	max_pos_hash_score=550	max_right=280	max_right_minus=254	max_right_plus=280	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.34	new_junction_read_count=41	polymorphism_frequency=2.964e-01	pos_hash_score=29	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=16	side_1_possible_overlap_registers=290	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=40
JC	221	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=23	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=3.110e-01	junction_possible_overlap_registers=274	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____300__300__0__0	max_left=282	max_left_minus=282	max_left_plus=276	max_min_left=141	max_min_left_minus=141	max_min_left_plus=124	max_min_right=135	max_min_right_minus=135	max_min_right_plus=123	max_pos_hash_score=550	max_right=267	max_right_minus=262	max_right_plus=267	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.37	new_junction_read_count=45	polymorphism_frequency=3.110e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=16	side_1_possible_overlap_registers=290	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=43
JC	222	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=5	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.155e-02	junction_possible_overlap_registers=270	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=262	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=67	max_min_right_minus=67	max_min_right_plus=60	max_pos_hash_score=542	max_right=206	max_right_minus=67	max_right_plus=206	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.07	new_junction_read_count=9	polymorphism_frequency=9.155e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=20	side_1_possible_overlap_registers=290	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=9
JC	223	.	NC_000913	1286906	-1	NC_000913	4175537	-1	0	alignment_overlap=19	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.054e-02	junction_possible_overlap_registers=271	key=NC_000913__1286906__-1__NC_000913__4175556__-1__19____300__300__0__0	max_left=272	max_left_minus=272	max_left_plus=263	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=9	max_min_right_plus=14	max_pos_hash_score=544	max_right=14	max_right_minus=9	max_right_plus=14	neg_log10_pos_hash_p_value=10.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.054e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=19	side_1_possible_overlap_registers=290	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=271	side_2_read_count=154	side_2_redundant=0	total_non_overlap_reads=4
JC	224	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=1	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=7.164e-02	junction_possible_overlap_registers=270	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=241	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=49	max_min_right_minus=9	max_min_right_plus=49	max_pos_hash_score=542	max_right=206	max_right_minus=9	max_right_plus=206	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=7.164e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=20	side_1_possible_overlap_registers=290	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=5
JC	225	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=88	coverage_plus=89	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=287	max_left_plus=294	max_min_left=146	max_min_left_minus=133	max_min_left_plus=146	max_min_right=143	max_min_right_minus=139	max_min_right_plus=143	max_pos_hash_score=574	max_right=291	max_right_minus=291	max_right_plus=287	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=179	polymorphism_frequency=1.000e+00	pos_hash_score=102	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=177
JC	226	.	NC_000913	1397238	-1	NC_000913	1995623	-1	0	alignment_overlap=0	coverage_minus=110	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1397238__-1__NC_000913__1995623__-1__0____300__300__1__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=148	max_min_left_minus=139	max_min_left_plus=148	max_min_right=150	max_min_right_minus=150	max_min_right_plus=146	max_pos_hash_score=582	max_right=298	max_right_minus=298	max_right_plus=291	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.42	new_junction_read_count=184	polymorphism_frequency=1.000e+00	pos_hash_score=99	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=183
JC	227	.	NC_000913	1902474	-1	NC_000913	1902593	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.197e-02	junction_possible_overlap_registers=281	key=NC_000913__1902474__-1__NC_000913__1902584__1__9____300__300__0__0	max_left=200	max_left_minus=200	max_left_plus=104	max_min_left=105	max_min_left_minus=105	max_min_left_plus=104	max_min_right=91	max_min_right_minus=91	max_min_right_plus=0	max_pos_hash_score=564	max_right=286	max_right_minus=147	max_right_plus=286	neg_log10_pos_hash_p_value=10.7	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.197e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=9	side_1_possible_overlap_registers=290	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=4
JC	228	.	NC_000913	1918928	-1	NC_000913	1919349	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.348e-02	junction_possible_overlap_registers=277	key=NC_000913__1918928__-1__NC_000913__1919336__1__13____300__300__0__0	max_left=112	max_left_minus=112	max_left_plus=37	max_min_left=37	max_min_left_minus=28	max_min_left_plus=37	max_min_right=77	max_min_right_minus=77	max_min_right_plus=0	max_pos_hash_score=556	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.348e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=13	side_1_possible_overlap_registers=290	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=277	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	229	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=95	coverage_plus=80	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=282	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=286	max_left_minus=286	max_left_plus=286	max_min_left=143	max_min_left_minus=143	max_min_left_plus=129	max_min_right=131	max_min_right_minus=130	max_min_right_plus=131	max_pos_hash_score=566	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.41	new_junction_read_count=178	polymorphism_frequency=1.000e+00	pos_hash_score=87	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=175
JC	230	.	NC_000913	1995620	1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=92	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1995620__1__NC_000913__2290113__-1__0____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=296	max_min_left=149	max_min_left_minus=143	max_min_left_plus=149	max_min_right=146	max_min_right_minus=145	max_min_right_plus=146	max_pos_hash_score=582	max_right=293	max_right_minus=293	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.12	new_junction_read_count=145	polymorphism_frequency=1.000e+00	pos_hash_score=79	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=145
JC	231	.	NC_000913	2357652	-1	NC_000913	2357836	1	0	alignment_overlap=34	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.621e-02	junction_possible_overlap_registers=256	key=NC_000913__2357652__-1__NC_000913__2357802__1__34____300__300__0__0	max_left=224	max_left_minus=224	max_left_plus=174	max_min_left=92	max_min_left_minus=92	max_min_left_plus=70	max_min_right=92	max_min_right_minus=41	max_min_right_plus=92	max_pos_hash_score=514	max_right=262	max_right_minus=262	max_right_plus=184	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=5.621e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=34	side_1_possible_overlap_registers=290	side_1_read_count=153	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=256	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=7
JC	232	.	NC_000913	2357690	-1	NC_000913	2357874	1	0	alignment_overlap=25	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.073e-02	junction_possible_overlap_registers=265	key=NC_000913__2357690__-1__NC_000913__2357849__1__25____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=221	max_min_left=122	max_min_left_minus=66	max_min_left_plus=122	max_min_right=59	max_min_right_minus=59	max_min_right_plus=54	max_pos_hash_score=532	max_right=209	max_right_minus=209	max_right_plus=153	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=5.073e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=25	side_1_possible_overlap_registers=290	side_1_read_count=151	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=7
JC	233	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=6	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=9.254e-02	junction_possible_overlap_registers=265	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=218	max_left_minus=218	max_left_plus=180	max_min_left=129	max_min_left_minus=129	max_min_left_plus=50	max_min_right=98	max_min_right_minus=57	max_min_right_plus=98	max_pos_hash_score=532	max_right=266	max_right_minus=220	max_right_plus=266	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.11	new_junction_read_count=13	polymorphism_frequency=9.254e-02	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=25	side_1_possible_overlap_registers=290	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=138	side_2_redundant=0	total_non_overlap_reads=13
JC	234	.	NC_000913	2714396	-1	NC_000913	3270072	1	-10	alignment_overlap=-10	coverage_minus=1	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=9.097e-02	junction_possible_overlap_registers=280	key=NC_000913__2714396__-1__NC_000913__3270072__1__-10__CAACAATCTG__300__300__0__0	max_left=48	max_left_minus=48	max_left_plus=43	max_min_left=48	max_min_left_minus=48	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=562	max_right=278	max_right_minus=236	max_right_plus=278	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.08	new_junction_read_count=10	polymorphism_frequency=9.097e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=CAACAATCTG
JC	235	.	NC_000913	2806048	-1	NC_000913	2806586	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.262e-02	junction_possible_overlap_registers=278	key=NC_000913__2806048__-1__NC_000913__2806574__1__12____300__300__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=89	max_min_right_minus=89	max_min_right_plus=89	max_pos_hash_score=558	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=4.262e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=4
JC	236	.	NC_000913	2808196	-1	NC_000913	2808689	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.614e-02	junction_possible_overlap_registers=279	key=NC_000913__2808196__-1__NC_000913__2808678__1__11____300__300__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=43	max_pos_hash_score=560	max_right=43	max_right_minus=43	max_right_plus=43	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.614e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=11	side_1_possible_overlap_registers=290	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	237	.	NC_000913	2904041	-1	NC_000913	2904103	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=2.424e-02	junction_possible_overlap_registers=289	key=NC_000913__2904041__-1__NC_000913__2904102__1__1____300__300__0__0	max_left=237	max_left_minus=0	max_left_plus=237	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=102	max_min_right_minus=0	max_min_right_plus=102	max_pos_hash_score=580	max_right=102	max_right_minus=0	max_right_plus=102	neg_log10_pos_hash_p_value=11.6	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.424e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=1	side_1_possible_overlap_registers=290	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	238	.	NC_000913	2944325	-1	NC_000913	2944820	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.467e-02	junction_possible_overlap_registers=280	key=NC_000913__2944325__-1__NC_000913__2944810__1__10____300__300__0__0	max_left=127	max_left_minus=127	max_left_plus=127	max_min_left=64	max_min_left_minus=64	max_min_left_plus=64	max_min_right=82	max_min_right_minus=82	max_min_right_plus=82	max_pos_hash_score=562	max_right=102	max_right_minus=102	max_right_plus=102	neg_log10_pos_hash_p_value=10.7	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=4.467e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=10	side_1_possible_overlap_registers=290	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	239	.	NC_000913	2947448	-1	NC_000913	2947670	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.915e-02	junction_possible_overlap_registers=289	key=NC_000913__2947448__-1__NC_000913__2947670__1__-1__A__300__300__0__0	max_left=199	max_left_minus=199	max_left_plus=199	max_min_left=87	max_min_left_minus=87	max_min_left_plus=0	max_min_right=95	max_min_right_minus=95	max_min_right_plus=95	max_pos_hash_score=580	max_right=217	max_right_minus=217	max_right_plus=95	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.915e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=A
JC	240	.	NC_000913	3225668	-1	NC_000913	3225834	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.297e-02	junction_possible_overlap_registers=278	key=NC_000913__3225668__-1__NC_000913__3225822__1__12____300__300__0__0	max_left=211	max_left_minus=211	max_left_plus=188	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=100	max_min_right_minus=77	max_min_right_plus=100	max_pos_hash_score=558	max_right=100	max_right_minus=77	max_right_plus=100	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.297e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=143	side_2_redundant=0	total_non_overlap_reads=3
JC	241	.	NC_000913	3269899	-1	NC_000913	3270239	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.738e-02	junction_possible_overlap_registers=272	key=NC_000913__3269899__-1__NC_000913__3270221__1__18____300__300__0__0	max_left=146	max_left_minus=146	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=127	max_min_right_minus=127	max_min_right_plus=127	max_pos_hash_score=546	max_right=127	max_right_minus=127	max_right_plus=127	neg_log10_pos_hash_p_value=10.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.738e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=18	side_1_possible_overlap_registers=290	side_1_read_count=159	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=272	side_2_read_count=135	side_2_redundant=0	total_non_overlap_reads=4
JC	242	.	NC_000913	3270072	1	NC_000913	3639193	1	-10	alignment_overlap=-10	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=3.630e-02	junction_possible_overlap_registers=280	key=NC_000913__3270072__1__NC_000913__3639193__1__-10__CAGATTGTTG__300__300__0__0	max_left=267	max_left_minus=267	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_pos_hash_score=562	max_right=3	max_right_minus=3	max_right_plus=0	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.630e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CAGATTGTTG
JC	243	.	NC_000913	3306022	-1	NC_000913	3306437	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.478e-02	junction_possible_overlap_registers=278	key=NC_000913__3306022__-1__NC_000913__3306425__1__12____300__300__0__0	max_left=140	max_left_minus=140	max_left_plus=140	max_min_left=41	max_min_left_minus=0	max_min_left_plus=41	max_min_right=42	max_min_right_minus=28	max_min_right_plus=42	max_pos_hash_score=558	max_right=62	max_right_minus=28	max_right_plus=62	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.478e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=141	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=3
JC	244	.	NC_000913	3324311	-1	NC_000913	3324764	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.000e-02	junction_possible_overlap_registers=282	key=NC_000913__3324311__-1__NC_000913__3324756__1__8____300__300__0__0	max_left=284	max_left_minus=284	max_left_plus=113	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=51	max_min_right_plus=51	max_pos_hash_score=566	max_right=51	max_right_minus=51	max_right_plus=51	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=3.000e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=8	side_1_possible_overlap_registers=290	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=3
JC	245	.	NC_000913	3621836	-1	NC_000913	3622017	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.817e-01	junction_possible_overlap_registers=278	key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0	max_left=190	max_left_minus=157	max_left_plus=190	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=131	max_min_right_minus=131	max_min_right_plus=97	max_pos_hash_score=558	max_right=131	max_right_minus=131	max_right_plus=97	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=5.817e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=12	side_2_possible_overlap_registers=290	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=4
JC	246	.	NC_000913	3648146	-1	NC_000913	3648378	1	0	alignment_overlap=58	coverage_minus=3	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=8.052e-02	junction_possible_overlap_registers=232	key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0	max_left=214	max_left_minus=214	max_left_plus=180	max_min_left=90	max_min_left_minus=0	max_min_left_plus=90	max_min_right=79	max_min_right_minus=79	max_min_right_plus=69	max_pos_hash_score=466	max_right=168	max_right_minus=79	max_right_plus=168	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=8.052e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=58	side_1_possible_overlap_registers=290	side_1_read_count=143	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=9
JC	247	.	NC_000913	3648156	-1	NC_000913	3648388	1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.691e-02	junction_possible_overlap_registers=285	key=NC_000913__3648156__-1__NC_000913__3648383__1__5____300__300__0__0	max_left=155	max_left_minus=155	max_left_plus=155	max_min_left=125	max_min_left_minus=125	max_min_left_plus=125	max_min_right=92	max_min_right_minus=92	max_min_right_plus=92	max_pos_hash_score=572	max_right=154	max_right_minus=154	max_right_plus=152	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=4.691e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=5	side_1_possible_overlap_registers=290	side_1_read_count=148	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=5
JC	248	.	NC_000913	3764827	-1	NC_000913	3765008	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.660e-01	junction_possible_overlap_registers=278	key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0	max_left=190	max_left_minus=157	max_left_plus=190	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=131	max_min_right_minus=131	max_min_right_plus=97	max_pos_hash_score=558	max_right=285	max_right_minus=131	max_right_plus=285	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=5.660e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=12	side_2_possible_overlap_registers=290	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=5
JC	249	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=4	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.202e-01	junction_possible_overlap_registers=249	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=209	max_left_minus=209	max_left_plus=97	max_min_left=97	max_min_left_minus=0	max_min_left_plus=97	max_min_right=107	max_min_right_minus=107	max_min_right_plus=0	max_pos_hash_score=500	max_right=179	max_right_minus=107	max_right_plus=179	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.10	new_junction_read_count=11	polymorphism_frequency=1.202e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=41	side_1_possible_overlap_registers=290	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=249	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=9
JC	250	.	NC_000913	4297233	-1	NC_000913	4297582	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.609e-02	junction_possible_overlap_registers=278	key=NC_000913__4297233__-1__NC_000913__4297570__1__12____300__300__0__0	max_left=198	max_left_minus=198	max_left_plus=198	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=558	max_right=157	max_right_minus=157	max_right_plus=65	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.609e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=12	side_1_possible_overlap_registers=290	side_1_read_count=122	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=3
JC	251	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=4	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=6.281e-02	junction_possible_overlap_registers=281	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=262	max_left_minus=210	max_left_plus=262	max_min_left=96	max_min_left_minus=79	max_min_left_plus=96	max_min_right=83	max_min_right_minus=83	max_min_right_plus=73	max_pos_hash_score=564	max_right=209	max_right_minus=209	max_right_plus=195	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.08	new_junction_read_count=10	polymorphism_frequency=6.281e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=9	side_1_possible_overlap_registers=290	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=156	side_2_redundant=0	total_non_overlap_reads=10
JC	252	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=7	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=7.692e-02	junction_possible_overlap_registers=281	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=222	max_left_minus=212	max_left_plus=222	max_min_left=144	max_min_left_minus=144	max_min_left_plus=136	max_min_right=142	max_min_right_minus=142	max_min_right_plus=69	max_pos_hash_score=564	max_right=228	max_right_minus=151	max_right_plus=228	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.10	new_junction_read_count=13	polymorphism_frequency=7.692e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=9	side_1_possible_overlap_registers=290	side_1_read_count=161	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=156	side_2_redundant=0	total_non_overlap_reads=13
JC	253	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=8	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.410e-01	junction_possible_overlap_registers=201	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=208	max_left_minus=154	max_left_plus=208	max_min_left=70	max_min_left_minus=70	max_min_left_plus=65	max_min_right=98	max_min_right_minus=98	max_min_right_plus=77	max_pos_hash_score=404	max_right=183	max_right_minus=157	max_right_plus=183	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.16	new_junction_read_count=14	polymorphism_frequency=1.410e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=89	side_1_possible_overlap_registers=290	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=14
UN	254	.	NC_000913	15650	16452
UN	255	.	NC_000913	20079	20278
UN	256	.	NC_000913	70740	70740
UN	257	.	NC_000913	71079	71079
UN	258	.	NC_000913	224019	224509
UN	259	.	NC_000913	225172	225327
UN	260	.	NC_000913	227273	228410
UN	261	.	NC_000913	257908	258683
UN	262	.	NC_000913	270795	270795
UN	263	.	NC_000913	270798	270798
UN	264	.	NC_000913	270804	271000
UN	265	.	NC_000913	274248	274863
UN	266	.	NC_000913	274865	274865
UN	267	.	NC_000913	279446	279645
UN	268	.	NC_000913	279647	279647
UN	269	.	NC_000913	290919	291129
UN	270	.	NC_000913	315513	316205
UN	271	.	NC_000913	316207	316211
UN	272	.	NC_000913	354596	354599
UN	273	.	NC_000913	361657	362203
UN	274	.	NC_000913	381533	382315
UN	275	.	NC_000913	391984	392686
UN	276	.	NC_000913	392689	392689
UN	277	.	NC_000913	392693	392693
UN	278	.	NC_000913	526121	526121
UN	279	.	NC_000913	526124	526436
UN	280	.	NC_000913	526439	526439
UN	281	.	NC_000913	526442	526442
UN	282	.	NC_000913	567047	567752
UN	283	.	NC_000913	567754	567754
UN	284	.	NC_000913	574869	574869
UN	285	.	NC_000913	574871	575505
UN	286	.	NC_000913	581335	581335
UN	287	.	NC_000913	608299	609087
UN	288	.	NC_000913	609093	609093
UN	289	.	NC_000913	688131	688759
UN	290	.	NC_000913	1094527	1095224
UN	291	.	NC_000913	1095228	1095229
UN	292	.	NC_000913	1299499	1300697
UN	293	.	NC_000913	1396331	1396964
UN	294	.	NC_000913	1468179	1468179
UN	295	.	NC_000913	1468182	1468182
UN	296	.	NC_000913	1468184	1468184
UN	297	.	NC_000913	1468187	1468955
UN	298	.	NC_000913	1468958	1468958
UN	299	.	NC_000913	1469550	1469550
UN	300	.	NC_000913	1469553	1469553
UN	301	.	NC_000913	1469559	1470228
UN	302	.	NC_000913	1528597	1528886
UN	303	.	NC_000913	1651129	1651129
UN	304	.	NC_000913	1651132	1651282
UN	305	.	NC_000913	1651284	1651285
UN	306	.	NC_000913	1978503	1979276
UN	307	.	NC_000913	2067006	2067006
UN	308	.	NC_000913	2067008	2067041
UN	309	.	NC_000913	2069194	2069194
UN	310	.	NC_000913	2069196	2069976
UN	311	.	NC_000913	2069982	2069982
UN	312	.	NC_000913	2102021	2102657
UN	313	.	NC_000913	2170449	2171164
UN	314	.	NC_000913	2289189	2289189
UN	315	.	NC_000913	2289191	2289827
UN	316	.	NC_000913	2514536	2514540
UN	317	.	NC_000913	2514542	2515344
UN	318	.	NC_000913	2726336	2728979
UN	319	.	NC_000913	2729834	2729835
UN	320	.	NC_000913	2729840	2729840
UN	321	.	NC_000913	2729842	2730674
UN	322	.	NC_000913	2730676	2730676
UN	323	.	NC_000913	2996616	2996617
UN	324	.	NC_000913	2996619	2996620
UN	325	.	NC_000913	2996622	2997403
UN	326	.	NC_000913	2997411	2997411
UN	327	.	NC_000913	2997416	2997416
UN	328	.	NC_000913	2997420	2997420
UN	329	.	NC_000913	3130426	3131067
UN	330	.	NC_000913	3186381	3186381
UN	331	.	NC_000913	3186385	3187160
UN	332	.	NC_000913	3365836	3366470
UN	333	.	NC_000913	3423935	3423935
UN	334	.	NC_000913	3423937	3424373
UN	335	.	NC_000913	3424928	3426578
UN	336	.	NC_000913	3427210	3428298
UN	337	.	NC_000913	3583692	3583692
UN	338	.	NC_000913	3583696	3583697
UN	339	.	NC_000913	3583700	3583910
UN	340	.	NC_000913	3619548	3620804
UN	341	.	NC_000913	3620806	3620808
UN	342	.	NC_000913	3620810	3620810
UN	343	.	NC_000913	3620813	3620813
UN	344	.	NC_000913	3620815	3620816
UN	345	.	NC_000913	3620819	3620819
UN	346	.	NC_000913	3620823	3620823
UN	347	.	NC_000913	3621336	3621338
UN	348	.	NC_000913	3621343	3622051
UN	349	.	NC_000913	3622053	3622054
UN	350	.	NC_000913	3622058	3622058
UN	351	.	NC_000913	3652297	3652950
UN	352	.	NC_000913	3762542	3763807
UN	353	.	NC_000913	3764345	3764345
UN	354	.	NC_000913	3764347	3765008
UN	355	.	NC_000913	3765028	3765028
UN	356	.	NC_000913	3883418	3883472
UN	357	.	NC_000913	3942295	3943135
UN	358	.	NC_000913	3944324	3945291
UN	359	.	NC_000913	4035995	4036812
UN	360	.	NC_000913	4038108	4038108
UN	361	.	NC_000913	4038110	4038411
UN	362	.	NC_000913	4038413	4038413
UN	363	.	NC_000913	4038990	4039103
UN	364	.	NC_000913	4039105	4039108
UN	365	.	NC_000913	4039674	4040317
UN	366	.	NC_000913	4040321	4040321
UN	367	.	NC_000913	4166923	4167964
UN	368	.	NC_000913	4168848	4171374
UN	369	.	NC_000913	4208374	4209451
UN	370	.	NC_000913	4210304	4210304
UN	371	.	NC_000913	4210306	4210306
UN	372	.	NC_000913	4210308	4212840
UN	373	.	NC_000913	4212842	4212842
UN	374	.	NC_000913	4212844	4212844
UN	375	.	NC_000913	4415961	4415968
UN	376	.	NC_000913	4498476	4499226
UN	377	.	NC_000913	4499233	4499233
UN	378	.	NC_000913	4507747	4508419
UN	379	.	NC_000913	4508421	4508421
UN	380	.	NC_000913	4508425	4508425