Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,995,620 IS5 (–) +4 bp intergenic (‑261/‑32) uvrY ← / → yecU DNA‑binding transcriptional activator UvrY/protein YecU

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1397238NA (NA)16 (1.240) 15/318 0.0 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 1995623 0 (0.000)intergenic (‑264/‑32) uvrY/yecU DNA‑binding transcriptional activator UvrY/protein YecU
* ? NC_000913 1995620 =0 (0.000)17 (1.320) 16/318 0.0 100% intergenic (‑261/‑35) uvrY/yecU DNA‑binding transcriptional activator UvrY/protein YecU
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

CATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTAT  >  NC_000913/2289962‑2290354
                                                                                                                                                       |                                                                                                                                                                                                                                                 
cATGCGGGACAAGAAAAGCTCTTTTCTGGTCTGACGGCGCTTACTGCGGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATTACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGtn                                                                                                                                                <  1:28410/251‑2 (MQ=255)
  tGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGCAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGCCAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTa                                                                                                                                               >  1:254500/1‑250 (MQ=255)
           aGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAGCCTATGAAATTAATTGCTGTTAAAAGCATTgg                                                                                                                                     <  1:253478/251‑1 (MQ=255)
                          tGGTCTGACGTCGCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCGTTGGCTCCAGATGTCAAACATGATCGCATGTCAGGGACTTGTTCGGATGTTTCATGGCGCTGTAGCCACCAGAACAGATATTGCGGATCGACAAACACAAGCAGATCCAGATTTATGTATTGAGc                                                                                                                                                                           <  1:95168/198‑1 (MQ=9)
                                                     cNCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCAACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGttttt                                                                                           >  1:232480/1‑251 (MQ=255)
                                                                       gTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGa                                                                                                                                                                                               >  1:266427/1‑133 (MQ=255)
                                                                               cTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATCTCAGGGCATTGTTCGAACATTCCATAACGCTGTAGCAACCAGAAAAGATATTGCGGAACAACAAAGCGAAACAGAACCAGATTGATGAATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCCTTGGGTACAGCAAATACCCATAGCTCCATACCCGGAGTAAGATTTTAAAAACTGTTTAAAGAAATGcaca                                                                   >  1:287100/1‑249 (MQ=255)
                                                                                       naaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCttt                                                                                                                                                                        >  1:30774/2‑140 (MQ=255)
                                                                                                   aTGGCTCCAGATGACAAACAGGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAAGTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATTCCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAg                                             <  1:287239/251‑1 (MQ=255)
                                                                                                             aggACAAACATGATCTCATATCAGGGACTTGTTCGCACTTTCCATAACGCCGCAGCCACCAGACCAGATATTGCGGAACGCCACAGAGTCTCAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAATTTAGTTGCTGTTAAAAGCATTGGGAACAGCCAATACCCCTAGCTCCATACCCGGAGTCAGTTTTTCACAACTGTTTACAGAAATGCACAAGTATTGTGTTTGATTTTTTAGTTGtttttat                                   >  1:272523/3‑249 (MQ=255)
                                                                                                                     cATGATCTCATCTCAGGGACTTGTTCGCAACTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGACACAGAACCAGATTGATGCATTGCGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAAATGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtgatg                              >  1:97661/1‑248 (MQ=255)
                                                                                                                                        cTTGTTCGCACCTTCCATAACGCTGTAGCCCACAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGAATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATCGCTCTATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCCCAAGTATTGTGATTGCTTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGt        >  1:292581/1‑251 (MQ=255)
                                                                                                                                           gTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAGCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGGATTGTGATTGATTTTTTAGGTGTTTTTCTTGATGAGAAGCTGATGCACAATTCCGTCt      <  1:260895/250‑1 (MQ=255)
                                                                                                                                              cGCACCTTCCATAACGCTGTATCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACTCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTGTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTtat  <  1:12900/251‑1 (MQ=255)
                                                                                                                                               gCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACACGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACCGAAAATACCCATAGCTCCATACCCgg                                                                                                      >  1:288974/1‑150 (MQ=255)
                                                                                                                                                  ctttCCATAACGCTGTATCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCATAGTGATGCATTGAGCATTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt                                                                                                                                   <  1:207096/116‑1 (MQ=255)
                                                                                                                                                  ccTTCCATNANNNTNNAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACNAGATTGATGCATTGANCTNTCATNCTANGAAATTAATTGCTGTTAAAAGCATTGGGt                                                                                                                                   >  2:207096/1‑118 (MQ=255)
                                                                                                                                                       |                                                                                                                                                                                                                                                 
CATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTAT  >  NC_000913/2289962‑2290354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.