Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_012971	4,302,992	(GCC)2→1	coding (408‑410/1338 nt)	amiB →	N‑acetylmuramoyl‑L‑alanine amidase AmiB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012971	4302990 =	1 (0.010)	50 (0.530)	39/580	1.1	99.0%	coding (406/1338 nt)	amiB	N‑acetylmuramoyl‑L‑alanine amidase AmiB
	?	NC_012971	= 4302986	0 (0.000)					coding (402/1338 nt)	amiB	N‑acetylmuramoyl‑L‑alanine amidase AmiB

GGATCGTCATTGAGCAAAGTGCGCAATTTACGCGCGATGGCGATGGTGACATTTTTCTCCCGCGTACCACCGGGGCCGATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012971/4303285‑4302990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCC  <  NC_012971/4302986‑4302697                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ggagCGTCATTGAGCAAAGTGCGCAATTTACGCGCGATGGCGATGTTGACATTTTTCTCCCGCGTACCACCGGGGCCGATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCTTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCTTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGTGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGA                                                                                                                                                                                                                                                                                                <  2:29221/296‑1  GATCGTCATTGAGCAAAGTGCGCAATTTACGCGCGATGGCGATGGTGACATTTTTCTCCCGCGTACCACCGGGGCCGATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATATCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCTTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGA                                                                                                                                                                                                                                                                                                <  1:787838/299‑1    TCGTCATTGAGCAAAGTGCGCAATTTACGCGCGATGGCGATGGTGACATTTTTCTCCCGCGTACCACCGGGGCCGATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGC                                                                                                                                                                                                                                                                                             >  2:479310/1‑300                                              GTGACATTTTTCTCCCGCGTACCACCGGGGCCGATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATATCGATGNTAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACTACATTGTAA                                                                                                                                                                                                                                                   <  1:165959/300‑1                                                              GCGTACCACCGGGGCCGATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACAACCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTNCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGC                                                                                                                                                                                                                                    >  2:627730/1‑299                                                                              GATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCAGTTTTAAACGGATTGCGCGCCGGTTCGCCGACGCGCGGTGCGAAAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGTCACATCGGCGTTAATCGTAACGACGAAATTGTAATTGCTGCCATTCTGCCGCTTCACCGCGTCGGT                                                                                                                                                                                                                   >  2:493120/1‑300                                                                                   CGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTAC                                                                                                                                                                                                              >  1:467283/1‑300                                                                                     CCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACC                                                                                                                                                                                                             >  1:128935/1‑299                                                                                          GTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTC                                                                                                                                                                                                       >  1:37879/1‑300                                                                                          GTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTC                                                                                                                                                                                                       >  2:673507/1‑300                                                                                                        GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCA                                                                                                                                                                                         >  1:306943/1‑300                                                                                                                TCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGT                                                                                                                                                                                 <  1:467285/300‑1                                                                                                                    TAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCG                                                                                                                                                                             <  2:673644/300‑1                                                                                                                     AGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGT                                                                                                                                                                            <  1:699873/300‑1                                                                                                                     AGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACGGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGCCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGT                                                                                                                                                                            <  2:487127/300‑1                                                                                                                                     TCGCTAGTGTTAGCCGTCACGCGCGCGGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGGGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGTTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGC                                                                                                                                                            <  2:210069/300‑1                                                                                                                                     TCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGTAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGC                                                                                                                                                            <  1:393295/300‑1                                                                                                                                     TCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGC                                                                                                                                                            <  1:622377/300‑1                                                                                                                                       GCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGC                                                                                                                                                            <  2:333332/298‑1                                                                                                                                        CCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTT                                                                                                                                                         >  2:689041/1‑300                                                                                                                                           GTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCaa                                                                                                                                                      >  2:347480/1‑298                                                                                                                                           GTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCA                                                                                                                                                      >  1:55326/1‑300                                                                                                                                                                       GCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTCCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGC                                                                                                                          >  1:185601/1‑300                                                                                                                                                                          TTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCACAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGC                                                                                                                       >  2:792871/1‑300                                                                                                                                                                               GTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAAC                                                                                                                  >  1:101359/1‑300                                                                                                                                                                                       GCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAAC                                                                                                            >  1:698177/1‑298                                                                                                                                                                                         TGATAACACCCTTAGTGCGTTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGTAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGG                                                                                                          <  2:672519/298‑1                                                                                                                                                                                          GATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCAACAGATTATTGCCGCTGAACAACAACGGCA                                                                                                        >  2:762817/1‑299                                                                                                                                                                                                 CCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGNGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGA                                                                                                >  1:169373/1‑300                                                                                                                                                                                                    GTAGTGCTGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGGAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAAT                                                                                              <  2:702254/299‑1                                                                                                                                                                                                    GTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAAT                                                                                              <  2:794163/299‑1                                                                                                                                                                                                     TAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGGAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAAT                                                                                              <  2:702266/298‑1                                                                                                                                                                                                       GTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCAC                                                                                           >  1:431775/1‑299                                                                                                                                                                                                          CGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTACCTGAATCACGCC                                                                                        >  2:54826/1‑299                                                                                                                                                                                                                  TTCCGCTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCATTTGTTT                                                                               <  2:289402/300‑1                                                                                                                                                                                                                       TTTTAGACGGATTGCGCGCCGGTTCGCTGACGCGCGGTTCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGTCGGAGGAGGCGTTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCTTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATAT                                                                          <  2:213250/300‑1                                                                                                                                                                                                                               GGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCC                                                                  >  1:122762/1‑300                                                                                                                                                                                                                               GGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGC                                                                   <  2:666190/299‑1                                                                                                                                                                                                                                        GCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGNTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGT                                                         <  2:638325/300‑1                                                                                                                                                                                                                                           GGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGNCATTGTAATTGCTGCCATTCTGCCGCTTCACCNCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCATGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTT                                                       >  2:608226/1‑299                                                                                                                                                                                                                                                           GTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAAC                                       >  1:538292/1‑299                                                                                                                                                                                                                                                           GTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCATAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCATGAATCACGCCCGTTTGTTTGATATCGAGCGCCAAGGTGCGTTTGCTTTGATGGCTAAAC                                       >  2:466204/1‑299                                                                                                                                                                                                                                                                  AACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATC                               <  1:252922/300‑1                                                                                                                                                                                                                                                                    CCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCAAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCA                              >  2:175277/1‑299                                                                                                                                                                                                                                                                    CCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCAGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGACTTCACCAGATTATTGCCGCTGAACAACAACGGCCGTCCCTGACTCAAGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATAGCTAAACGCATAATCA                              >  2:477465/1‑299                                                                                                                                                                                                                                                                            GTTTCAACGCGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCaa                     >  1:793649/1‑298                                                                                                                                                                                                                                                                                    gtGTTTCGCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAAC              <  2:769226/297‑1                                                                                                                                                                                                                                                                                           GCAACCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGT       <  1:563048/299‑1                                                                                                                                                                                                                                                                                               CCACGGGCGGAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCATTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCAAGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCAAATAAAACTCAACGTTATCC  >  2:353474/1‑300                                                                                                                                                                                                                                                                                                 ACGGTCGGAGGAGGCGGTTGCTGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGTTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCC  <  2:521071/298‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGATCGTCATTGAGCAAAGTGCGCAATTTACGCGCGATGGCGATGGTGACATTTTTCTCCCGCGTACCACCGGGGCCGATAGCGCCAGGGTCCTGACCGCCGTGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTATTACTGCTGATAACACCCGTAGTGCGGTTACTTTCCGTTTTAAACGGATTGCGCGCCGGTTCGCTGACGCGCGGTGCGACAACCGCAGGCGTTTCAACGCGTTTCGCAACCACGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012971/4303285‑4302990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggAGGAGGCGGTGGCGGCACATCGGCGTTAATCGTAAAGACGACATTGTAATTGCTGCCATTCTGCCGCTTCACCGCTTCGGTTTTACCGTTTTCGGTAAGATCGACCACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCC  <  NC_012971/4302986‑4302697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.