New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2765412 =	115 (1.230)	18 (0.230)	11/500	4.5	15.6%	intergenic (‑259/+101)	abpA/yfjM	anti‑bacteriophage protein/protein YfjM
	?	NC_000913	= 2765419	97 (1.220)					intergenic (‑266/+94)	abpA/yfjM	anti‑bacteriophage protein/protein YfjM
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765630‑2765412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgccatagtgcc‑‑‑‑‑‑‑‑atagtgcCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACA  <  NC_000913/2765419‑2765191                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATCGTGCCCTAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAAACAAACACTTGATTAAGGCTGTGCCTACCTTACGTcaatt                                                                                                                                                      >  2:263777/1‑295   GCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTT                                                                                                                                                      >  1:560655/1‑298   GCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGC                                                                                                                                                                           >  2:749567/1‑277   GCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGC                                                                                                                                                                           <  1:749567/277‑1   GCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCA‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTT                                                                                                                                                      >  1:560643/1‑298                           GGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAAT                                                                                                                             >  1:737461/1‑299                           GGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCAATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATT                                                                                                                            >  1:397865/1‑300                                GGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTACGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAA                                                                                                                               >  2:490696/1‑300                                GGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAAACTTGATTAAGGCTGTGCCTACCTTAAGTTAGTTGGGGCAGTATGTTATATACCCAA                                                                                                                               >  2:489844/1‑300                                GGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCAATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAAACAA                                                                                                                               >  2:489825/1‑300                                     CAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCA                                                                                                                    >  1:387269/1‑298                                                                 ATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAA                                                                                       >  1:567746/1‑299                                                                            GCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCT                                                                            >  1:743152/1‑299                                                                                                       ACCAACCAGTAAAGAATGAGTGCAACTGTGTTTTATAATATCAAATGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTTCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTTCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTTGGGCAGTATATTATATAACCAAACTAGACGTCAGGGTTACAATATTTGTGGAATCCTGGGAAACGGGATACCGGCTACCGAGAATGGCTGTGAAGTATTT                                                 <  2:300529/299‑1                                                                                                                                              ATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCNATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGT         <  1:154967/300‑1                                                                                                                                                     GTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTNATATAACCAAATTAGACGTCAGGGTTACAATANTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACA  <  2:560655/300‑1                                                                                                                                                     GTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTNATATAACCAAATTAGACGTCAGGGTTACAATANTTGTGGAATCCTGAAAAGCTTGATACCTACGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACA  <  2:567746/300‑1                                                                                                                                                       GATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTNATATAACCAAATTAGACGTCATGGTTACAATANTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACA  <  2:560643/298‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCG‑‑‑‑‑‑‑‑GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCC‑‑‑‑‑‑‑‑ATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765630‑2765412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgccatagtgcc‑‑‑‑‑‑‑‑atagtgcCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACA  <  NC_000913/2765419‑2765191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.